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Vol. 19, Issue 12, 5193-5202, December 2008
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*Genome Damage and Stability Centre, University of Sussex, Falmer, Brighton BN1 9RQ, United Kingdom; and
MGC Department of Genetics and Cell Biology and
Department of Pathology, Erasmus Medical Center, 3000 DR Rotterdam, The Netherlands
Submitted July 15, 2008;
Revised August 19, 2008;
Accepted September 8, 2008
Monitoring Editor: Orna Cohen-Fix
Y-family DNA polymerases carry out translesion synthesis past damaged DNA. DNA polymerases (pol)
and
are usually uniformly distributed through the nucleus but accumulate in replication foci during S phase. DNA-damaging treatments result in an increase in S phase cells containing polymerase foci. Using photobleaching techniques, we show that pol
is highly mobile in human fibroblasts. Even when localized in replication foci, it is only transiently immobilized. Although ubiquitination of proliferating cell nuclear antigen (PCNA) is not required for the localization of pol
in foci, it results in an increased residence time in foci. pol
is even more mobile than pol
, both when uniformly distributed and when localized in foci. Kinetic modeling suggests that both pol
and pol
diffuse through the cell but that they are transiently immobilized for
150 ms, with a larger proportion of pol
than pol
immobilized at any time. Treatment of cells with DRAQ5, which results in temporary opening of the chromatin structure, causes a dramatic immobilization of pol
but not pol
. Our data are consistent with a model in which the polymerases are transiently probing the DNA/chromatin. When DNA is exposed at replication forks, the polymerase residence times increase, and this is further facilitated by the ubiquitination of PCNA.
Present address: Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom.
Address correspondence to: Alan R. Lehmann (a.r.lehmann{at}sussex.ac.uk)
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