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Vol. 10, Issue 1, 161-178, January 1999
Max-Planck-Institute for Biochemistry, D-82152 Martinsried, Germany
Submitted August 12, 1998; Accepted November 5, 1998| |
ABSTRACT |
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The molecular and functional characterization of a 125-kDa Ca2+-extractable protein of the Triton X-100-insoluble fraction of Dictyostelium cells identified a new type of a gelsolin-related molecule. In addition to its five gelsolin segments, this gelsolin-related protein of 125 kDa (GRP125) reveals a number of unique domains, two of which are predicted to form coiled-coil regions. Another distinct attribute of GRP125 concerns the lack of sequence elements known to be essential for characteristic activities of gelsolin-like proteins, i.e. the severing, capping, or nucleation of actin filaments. The subcellular distribution of GRP125 to vesicular compartments suggests an activity of GRP125 different from actin-binding, gelsolin-related proteins. GRP125 expression is tightly regulated and peaks at the transition to the multicellular pseudoplasmodial stage of Dictyostelium development. GRP125 was found indispensable for slug phototaxis, because slugs fail to correctly readjust their orientation in the absence of GRP125. Analysis of the GRP125-deficient mutant showed that GRP125 is required for coupling photodetection to the locomotory machinery of slugs. We propose that GRP125 is essential in the natural environment for the propagation of Dictyostelium spores. We also present evidence for further representatives of the GRP125 type in Dictyostelium, as well as in heterologous cells from lower to higher eukaryotes.
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INTRODUCTION |
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A number of basic cellular functions require a rapid, localized
reorganization of the actin cytoskeleton, and
Ca2+-sensitive microfilament proteins often hold a key
position in the regulation of these processes (Brundage et
al., 1993
). Triton X-100 treatment of cells solubilizes a
substantial proportion of intracellular proteins, whereas the insoluble
fraction is enriched in cytoskeletal proteins (Prassler et
al., 1998
). The Ca2+ extract of the Triton
X-100-insoluble cellular material harbors a valuable source of
structural and regulatory proteins of the actin cytoskeleton (Jungbluth
et al., 1995
; Prassler et al., 1997
, 1998
). This
Ca2+ extract was further screened as part of our continuing
efforts to identify and characterize proteins involved in the
regulation of the organization and dynamics of the actin cytoskeleton.
In this study we describe a previously uncharacterized 125-kDa protein identified in the Ca2+ extract that has several hallmarks
of the gelsolin family of actin-binding proteins. We therefore refer to
this protein as gelsolin-related protein of 125 kDa (GRP125).
Gelsolin-related proteins are characterized by repeats of 125-150
amino acid segments constituting clusters of conserved sequence motifs
that define a characteristic three-dimensional domain structure (Way
and Weeds, 1988
, McLaughlin et al., 1993
) (compare Figure 1A). These segments in gelsolin-related
proteins are organized in triplicate, reflecting a gene multiplication
of a prototypical "gelsolin domain" (Kwiatkowski et al.,
1986
, Bazari et al., 1988
). Members of the gelsolin family
typically exist as either three-domain proteins, such as severin from
Dictyostelium discoideum (Yamamoto et al.,
1982
), fragmin from Physarum (Hasegawa et al.,
1980
), and capG (in macrophages and fibroblasts [Southwick and
DiNubile, 1986
]), or six-domain proteins, such as adseverin (in
adrenal glands [Maekawa et al., 1989
]) and gelsolin (Yin
and Stossel, 1979
). Gelsolin is expressed in most mammalian cell lines
(Kwiatkowski et al., 1988a
,b
), and gelsolin homologues have
been identified in Drosophila (Heintzelmann et
al., 1993
), Xenopus (Ankenbauer et al.,
1989
), earthworm (D'Haese and Hinssen, 1987
), and different crustaceae
(Lück et al., 1995
).
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Interestingly, some gelsolin relatives integrate the typical activities
of gelsolin-family members
capping, severing, and nucleation of actin
filaments
with other interactions or activities mediated by additional
domains. The well-characterized villin protein (Bretscher and Weber,
1980
) exhibits a C-terminal headpiece, which harbors an additional
F-actin-binding site that is used to form tightly packed actin bundles
(Glenney and Weber, 1981
). On the other hand, a myc basic
homology region in CapG (Prendergast and Ziff, 1991
), as well as an
N-terminal extension of the recently described supervillin
(Pestonjamasp et al., 1997
), might be involved in the
nuclear localization of these proteins. Finally, the flightless I gene
product of Drosophila contains a leucine-rich repeat at its
N terminus, a domain known to mediate protein-protein interactions (Campbell et al., 1993
).
A sequence-based characterization of GRP125 conducted in this study reveals unique N-and C-terminal domains in addition to its gelsolin core. Mutant cells lacking GRP125 exhibit a defect in their phototactic response in that photodetection is uncoupled from the locomotory machinery. The identification of GRP125 as a new type of gelsolin-related protein extends the structural and functional characteristics of the gelsolin protein family.
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MATERIALS AND METHODS |
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Cell Culture and Development of Dictyostelium Cells
The D. discoideum strain AX2 and GRP125-null mutants
were cultivated at 23°C in shaken suspension (150 rpm; Claviez
et al., 1982
) using axenic nutrient medium or else were
grown in medium on Petri dishes. To analyze development to aggregation
competence, cells were washed and resuspended in 17 mM K-Na phosphate
buffer (pH 6.0) at 107 cells/ml and shaken at 150 rpm for
9 h. In addition, analysis of developmental regulation was
accomplished by developing 5 × 107 cells on
nitrocellulose filters (Newell et al., 1969
). Cells at
different developmental stages were scraped off filters using a razor
blade and lysed in Tris-HCl (pH 7.5), 0.1% SDS, 1 mM DTT, 1 mM
Pefabloc (Boehringer Mannheim, Mannheim, Germany), and 1% protease inhibitor mixture (antipain, bestatin A, leupeptin, pepstatin, 10 µg/ml each) for preparation of total protein (Furukawa et
al., 1992
). Growth and development were also examined using cells
grown on nutrient agar plates on a lawn of Escherichia coli
B/2 (Noegel et al., 1985
). NIH/3T3 fibroblasts were grown on
HCl-treated, poly-L-lysine-coated glass coverslips in DMEM
supplemented with 10% FCS and 1% penicillin/streptomycin and
processed for microinjection as described by Celis (1994)
(cell culture
material purchased from Life Technologies, Gaithersburg, MD).
Phototaxis experiments were performed essentially as described by
Wallraff (1997)
. Up to 1 × 107 AX2 or mutant cells
were applied onto the surface of a water agar plate 9 cm in diameter.
The application point was asymmetrically located to one side of the
plate, and its distance to the light port was 7.5 cm. Control
experiments conducted in the absence of light used cells applied to the
center of the plate. After incubation for 3 d at 23°C in a
phototaxis chamber, trails and cellular material were blotted to
noncoated transparencies and stained with Coomassie Blue. For analysis
of the phototactic response of Dictyostelium fruiting
bodies, nutrient agar plates containing a lawn of E. coli
B/2 cells were point inoculated with the D. discoideum
strain AX2 or the GRP125-null mutants, incubated for 4 d in the
phototaxis chamber, and photographed from above.
Cloning, Sequencing, and Analysis of the GRP125 Coding Region
A
gt11 cDNA expression library prepared from D. discoideum AX3 cells starved for 4 h (Clontech Laboratories,
Palo Alto, CA) was screened with the 125I-labeled
monoclonal antibody (mAb) 212-174-1 (see below). This screen identified
a 2.5-kb clone,
-1A, which corresponds to a fragment of the GRP125
coding sequence from bp 205 to 2727 (A of ATG = 1). A genomic map
was constructed using 32P-labeled parts of the 2.5-kb phage
clone at its 5' (probe F3, bp 205-625 of the GRP125 coding region) and
3' ends (probe F1, bp 1228-2727). A 2.7-kb EcoRI fragment
at the 5' end and a 2.8-kb EcoRI fragment at the 3' end of
-1A were found appropriate for inverted PCR amplification and thus
to compile the complete sequence of GRP125. Eight micrograms of genomic
D. discoideum AX2 DNA were digested with EcoRI
and religated in an ample volume. A 100-µl reaction mixture for
inverted PCR contained 0.2 µg of this template and 0.1-nM
primers (3'-GCG AAG CTT GCA TCA CTT TGC ATA ATG AAA ACA TCC and 5'-GCG GGA TCC GAA TGA TAT ATT CCA AGT TGA CG for
amplification of the 5' fragment and 3'-GCG AAG CTT CGA CGG GAT
CAT CTG ATT TC and 5'-GCG GGA TCC GGT CAA TGA CGA AGC CAC
CG for amplification of the 3' fragment). Temperature cycles
started with 3 min at 96°C, followed by 30 cycles of 94°C for 1 min, 58°C for 1 min, 72°C for 3 min, and finally 5 min at 72°C.
Primers were designed to obtain a BamHI site at the 5' end
and a HindIII site at the 3' end of the amplified product,
which was cloned into pIC20R (Marsh et al., 1984
). Three
independent clones were sequenced for the amplification product at the
3' end (bp 2482-3992 of the GRP125 coding region). The sequence of the
amplified product at the 5' end (
1733-293) was verified by
sequencing a clone identified with the 5' probe (probe F3, bp 205-625
of the GRP125 coding region) in a screen of a genomic D. discoideum AX3 plasmid library (courtesy of R.A. Firtel,
University of California, San Diego, La Jolla, CA). This clone, G5,
includes ~6.5 kb upstream of the grp125 gene until bp 2051 of the
GRP125 coding sequence. Sequencing of DNA double strands was generally
performed in both directions with uni, reverse, and sequence-specific
primers applying the chain termination method (Sanger et
al., 1977
), or the dye termination method on an ABI
fluorescent sequencer (Applied Biosystems, Perkin Elmer-Cetus, Norwalk,
CT). Programs bestfit, coilscan, fasta, gap, motifs, peptidesort,
and pileup of the Wisconsin Package Version 9.1 (Genetics Computer
Group, Madison, WI) and blastp 2.0.3 (Altschul et
al., 1997
) were used to analyze the GRP125 sequence. Coiled-coil
predictions were compared applying a window size of 21 and MTK and
MTIK matrices with and without weighting options (MTK, matrix
derived from the sequences of myosins, tropomyosins and keratins
[intermediate filaments type I and II]; Lupas et al.,
1991
; MTIDK, matrix derived from myosins, paramyosins, tropomysins, intermediate filaments type I-V, desmosomal proteins, and kinesins; Lupas, 1996
).
Expression of GRP125 Polypeptide Fragments
A cDNA fragment coding for residues Asp-60 to Leu-308 of GRP125
(corresponding to S2 and S3 of GRP125) was obtained by PCR using
primers designed to introduce a BamHI site at the 5' end and
a HindIII site at the 3' end. The amplified product was
cloned into the expression vector pQE30 (Qiagen, Chatsworth, CA) and, after sequence verification, expressed in E. coli M15. The
His-tagged GRP125 fragment, designated GRP125/S2S3, was purified after
isopropyl-1-thio-
-D-galactopyranoside induction
for 1 h from the soluble fraction of bacterial extracts on
nickel-nitrilotriacetic acidagarose as recommended by the
manufacturer (Qiagen). For microinjection of GRP125/S2S3 into NIH/3T3
fibroblasts, the polypeptide was fluorescently labeled in 20 mM
phosphate buffer (pH 7.8) using tetramethylrhodamine iodoacetamide
(Molecular Probes, Eugene, OR) as described by Marriott (1994)
.
Additionally, an EcoRI cDNA fragment coding for residues
Glu-181 to Ser-380 of GRP125 (corresponding to S3 and most of S4 of
GRP125) was cloned into the pIMS5 expression vector (Simon et
al., 1988
) and expressed in E. coli JM105. Lysis of
bacteria was achieved in 10 mM Tris-HCl (pH 8.0), 100 mM NaCl, 1 mM
DTT, 5 mM EDTA, 0.5 mM Pefabloc, and 1% protease inhibitors (see
above) using a French press (Aminco; Spectronic Instruments, Rochester,
NY) at 16,000 psi. The lysate was centrifuged at 13,000 × g, and the recombinant polypeptide, GRP125/S3S4, was
isolated from the pelleted inclusion bodies in sufficient purity after
several wash steps. Thus, the first wash was accomplished by adding to
the above-mentioned buffer 1 mM EGTA, 25% sucrose, and 1% Triton
X-100. Subsequent wash steps applied increasing amounts of urea (0, 2, and 4 M) in 10 mM Tris-HCl (pH 8.0), 100 mM NaCl, 1 mM DTT, 1 mM EGTA,
0.5 mM Pefabloc, and 1% protease inhibitors. Solubilization of
GRP125/S3S4 occurred at the 6 M urea extraction step; refolding of
GRP125/S3S4 was achieved by gradually removing the urea by dialysis.
Gene Replacement in D. discoideum
For the construction of the targeting vector a genomic DNA
fragment comprising bp
81-1739 of the GRP125 coding region was obtained by PCR using primers 5'-GTG TGT ATC ATT AAA ATT G and 3'-CAA
TAT CAT TAG AAT TAC C. The amplified product was cloned into the pGEMT
vector (Promega, Madison, WI). Because of the absence of
EcoRI sites in its multiple cloning sites, a central genomic 5'-EcoRI-3'-EcoRI fragment was readily deleted
via restriction with EcoRI and isolation of the
vector-containing moiety. This latter fragment was blunt end ligated to
the 1.4-kb Bsr cassette, which had been excised from plasmid pBsr2
(Sutoh, 1993
) using XbaI and HindIII. The
construct was isolated with NotI-NcoI,
dephosphorylated, and used to transfect D. discoideum AX2
cells by electroporation (Celis, 1994
). Transformants were selected
with 7.5 µg/ml blasticidin S (Calbiochem-Novabiochem, San Diego, CA)
in nutrient medium, and independent clones of the GRP125-null mutants
were isolated (Wallraff and Gerisch, 1991
).
Antibody Production
mAb 212-174-1 was obtained from a BALB/c mouse immunized
intraperitoneally with a Ca2+ extract preparation and
Freund's adjuvant (Celis, 1994
). This Ca2+ extract was
isolated from Triton X-100-insoluble cell fractions of
Dictyostelium as described by Prassler et al.
(1997)
. Spleen cells were fused with PAIB3ag8I-myeloma
cells. Antibody 212-174-1 was identified in hybridoma culture
supernatant by immunofluorescent labeling as well as comparative
immunoblot analysis of the Ca2+ extract and of
homogenates from D. discoideum cells. Polyclonal antibodies
directed against S2 and S3 of GRP125 were raised in a rabbit by
subcutaneous immunization with the recombinant His-tagged GRP125/S2S3
fragment applying a standard immunization protocol that used Freund's
adjuvant. The serum was affinity purified on GRP125/S2S3 covalently
linked to a 6-aminohexanoic acid N-hydroxysuccinimide ester-Sepharose column (Pharmacia, Uppsala, Sweden). Bound antibodies were eluted with 100 mM glycine (pH 2.4) and dialyzed against PBS.
Similarly, polyclonal antibodies directed against S3 and S4 of GRP125
were raised by injecting a rabbit with the GRP125/S3S4 fragment using
Hunter's TiterMax (Sigma, Deisenhofen, Germany) as adjuvant. The serum
was affinity purified as described above on GRP125/S3S4 coupled to a
6-aminohexanoic acid N-hydroxysuccinimide ester-Sepharose column.
Immunofluorescence
For immunofluorescence labeling, growth phase or
aggregation-competent Dictyostelium cells were allowed to
adhere to glass coverslips 40 min before fixation. Cells were either
fixed for 10 min with cold methanol at
20°C or fixation was
accomplished with picric acid/formaldehyde and a postfixation step in
70% ethanol (Humbel and Biegelmann, 1992
). Binding of anti-GRP125
polyclonal antibodies was detected with Cy3-conjugated goat anti-rabbit
immunoglobulin G (IgG; Jackson ImmunoResearch Laboratories, West Grove,
PA). Imaging of cells was achieved using an Axiovert 135 fluorescence microscope equipped with a Plan Neofluar 100× oil objective (Zeiss, Oberkochen, Germany) and a cooled charge-coupled device camera (NU200;
Photometrics, Tucson, AZ).
Miscellaneous
For Southern blots, genomic DNA of D. discoideum was
prepared as described by Noegel et al. (1985)
and, after
restriction, transferred to nylon membranes (Biodyne B; Pall Biodyne,
East Hills, NY). Fragments of the cDNA clone
-1A comprising bp
205-640 (F3), 635-1234 (F2), or 1228-2727 (F1) of the GRP125 coding
region or the Bsr encoding sequence were nick translated and used as probes for hybridization experiments in the presence of 30% formamide. Subsequent wash steps used low-stringency (30% formamide),
medium-stringency (40% formamide), and high-stringency (50%
formamide) conditions. SDS-PAGE was performed on 3-20% gradient gels
or 10% minigels using the buffer system described by Laemmli (1970)
.
For Western blotting, proteins were transferred to nitrocellulose
(Towbin et al., 1979
). Mouse anti-cap34 (Hartmann et
al., 1989
), mouse anti-actin (Simpson et al., 1984
), or
mouse anti-csA (Bertholdt et al., 1985
) were detected using
iodinated sheep anti-mouse IgG (Amersham Buchler, Braunschweig,
Germany). Detection of polyclonal rabbit anti-GRP125 antibodies was
achieved with iodinated goat anti-rabbit IgG prepared by the
chloramine-T method (Sambrook et al., 1989
). Labeling
intensity was quantified with a Fuji BAS 1000 bioimaging analyzer
(Phosphoimager; Fuji Photo Film, Tokyo, Japan). Cell and tissue
homogenates of diverse origin for the "Zoo-Blot" were provided by
B. Muehlbauer and G. Gerisch (Max-Planck-Institute for Biochemistry).
The concentration of proteins was determined according
to Bradford (1976)
referring to bovine IgG as standard.
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RESULTS |
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Identification of a 125-kDa Protein in the Ca2+ Extract of the Triton X-100-insoluble Cellular Fraction
In an effort to identify and analyze regulatory microfilament
components present in the Ca2+-extract of the Triton
X-100-insoluble cellular material of D. discoideum, mAbs
were generated against this fraction and used to screen a
gt11
expression library of D. discoideum cDNA. mAb 212-174-1 identified a cDNA fragment of 2.5 kb truncated at its 5' and 3' ends.
Application of inverted PCR techniques and further analysis of a
genomic library using the initial phage clone as a probe yielded the
sequence of a complete open reading frame. The coding sequence from the
ATG start to the TAA stop codon comprises 3358 bp. There are two exons
(409 and 2852 nucleotides), separated by a short intron of 94 bp, that
encode a polypeptide 1087 amino acids in length (Figure
2A). The protein product of this
gene has a predicted relative molecular mass of 124,777 and a
calculated pI of 4.55, which evidently reflects the high content of
glutamate residues (Figure 2A).
Sequence Analysis Identified GRP125 as a Member of the Gelsolin Family of Actin-binding Proteins
Analysis of the deduced amino acid sequence of the 125-kDa
polypeptide revealed a significant similarity to members of the gelsolin family of actin-binding proteins. It displayed an overall identity to human plasma gelsolin of 27% with a 48% similarity (Kwiatkowski et al., 1988a
). We therefore designate this
polypeptide GRP125, gelsolin-related protein of 125 kDa. Consistent
with this categorization, GRP125 revealed a segmental organization
typical of members of the gelsolin family (Figure 1, A and B). The
highly conserved amino acids important for segment tertiary structure (termed motif B, A, C; Way and Weeds, 1988
) are found largely unchanged
in GRP125 (Figure 2B). The repeat pattern of these characteristic motifs strongly suggests that GRP125 belongs to the family of gelsolin-like proteins.
When the sequence of GRP125 (Figure 2A) is compared with gelsolin,
villin, and flightless I proteins or the recently described supervillin
(Kwiatkowski et al., 1988a
; Arpin et al., 1988
;
Campbell et al., 1993
; Pestonjamasp et al., 1997
)
(Figure 2B), the highest similarity is found for gelsolin. This
observation is valid in comparisons made at the level of individual
segments as well as the entire protein. On the other hand, from a
sequence-based phylogenetic analysis it is clear that GRP125 is not a
close relative of gelsolin. For example, human gelsolin/S2S3 and
GRP125/S2S3 share an identity of 28%, which is significantly lower
than the identity of 50% between the S2S3 regions of human gelsolin
and villin (Kwiatkowski et al., 1988a
; Arpin et
al., 1988
). However, this degree of sequence identity is in line
with the identities of 24-31% calculated by comparing
the S2S3 regions of gelsolin and villin with those of other more distantly related gelsolin family members, such as flightless I, protovillin, and supervillin.
Despite the apparent similarity of GRP125 to members of the gelsolin
family, several relevant criteria distinguish it from other
gelsolin-related proteins (Figure 1B). First, GRP125 only contains five
gelsolin-like segments (Figures 1B, pointer a, and 2, A and B). This
feature is unique among gelsolin-related proteins, which are usually
built up of either three or six gelsolin domains. Several lines of
evidence show that S1 is missing in GRP125, and that its first
N-terminal segment corresponds to S2 in gelsolin proteins. For example,
Van Troys et al. (1996)
reported characteristic differences
in the long helix of S1-type segments compared with the S2-type
counterparts, which are responsible for the differential binding of G-
or F-actin. The positively charged character of arginine or lysine
residues at S2 positions, equivalent to gelsolin residues 211, 213, and
222, is absolutely conserved throughout S2 segments, whereas the
corresponding helix positions in the S1 type are acidic or uncharged.
In the first N-terminal segment of GRP125, lysine residues occur at
those critical positions (GRP125 residues 113, 115, and 126) suggesting
that this segment corresponds to an S2 domain. A comparison of
sequences of single GRP125 segments with segments of gelsolin and its
relatives clearly defines the organization of GRP125 segments as
corresponding to the consecutive segments 2-6 of gelsolin (Figures 1B
and 2, A and B).
Second, GRP125 lacks the conserved consensus sequences found at the
interface between S1 and S2 in gelsolin related proteins (Figures 1B,
pointer b, and 2C). Neither the region implicated in the severing
activity of gelsolin-related proteins, nor the first
phosphatidylinositol bisphosphate (PIP2)-binding
motif is present in GRP125. Critical amino acid residues of gelsolin
involved in binding F-actin and the second phospholipid-binding site
(Figure 2C, gelsolin residues 161-172) (Kwiatkowski et al.,
1989
; Sun et al., 1994
) are only moderately conserved in
GRP125. Third, the N terminus of GRP125 harbors a unique 6-kDa
N-terminal repetitive sequence of unknown function (Figure 1B, pointer
a). Fourth, a prominent and unique feature of GRP125 is the presence of
two highly repetitive, glutamate-rich stretches. The first stretch comprises of an almost homogeneous run of 25 glutamates and is located
between segments 5 and 6 (Figure 1B, pointer c). The second glutamic
acidic-rich region located after segment 6 contains 21 repeats of the
motif EEV[I,T]K (Figure 1B, pointer d). Half of these repeats contain
a third glutamate and form the variant EEEVK. Hypermixed charge runs
(Karlin, 1995
) involving glutamate and lysine residues occur in a range
of proteins such as MAP1B (human MAP1B; Lien et al., 1994
),
the neurofilament triplet proteins (e.g., human NFM; Myers et
al., 1987
), or caldesmon (human caldesmon; Novy et al.,
1991
). However, the almost invariant EEVK repeat includes a single
noncharged (valine) residue in its middle, rendering this repeat a
characteristic motif that is unique to GRP125. Sequence-based structure
predictions (Lupas et al., 1991
; Lupas, 1996
) suggest the
glutamate-rich stretches together with their flanking regions have a
very high probability of forming
-helical coiled-coil structures.
Thus, selecting for apolar residues at positions a and
d (weight × 2.5) the residues between 554-581 and
710-748 are calculated by MTIDK and MTK matrices to have a probability of >95% of forming a coiled coil (Figure 2A; matrices are derived from myosins, paramyosins, tropomyosins, intermediate filaments type
I-V, desmosomal proteins, and kinesins [MTIDK], or from myosins, tropomyosins, and keratins [MTK]). Without using the weighting of
apolar positions, the entire second glutamate-rich region of GRP125 is
predicted to form a coiled-coil structure (Figure 2A). Fifth, a notable
and unique attribute of GRP125 is a repetitive sequence module located
at its very C terminus (Figure 1B, pointer e). This extension is ~20
kDa in size and does not reveal motifs or sequence patterns related to
any annotated sequence structures.
GRP125 Localizes to Vesicular Compartments
Dot blots using recombinant polypeptide fragments (Gly-69-Phe-182, Glu-181-Ser-380, and Asn-379-Ile-878) show a strong and specific interaction of mAb 212-174-1 to a region between amino acids Gly-69 and Phe-182 of GRP125 (our unpublished results). However, this antibody proved to react poorly with the same polypeptide after SDS-PAGE and immunoblotting. To obtain antibodies suitable for both immunoblot and immunofluorescence analysis, polyclonal antibodies were raised against bacterially expressed fragments of GRP125 from Dictyostelium. The different GRP125 fragments used in immunizations used either segments 2 and 3 (GRP125/S2S3) or segment 3 and most of segment 4 (GRP125/S3S4). The affinity-purified polyclonal rabbit anti-GRP125/S2S3 antibodies were shown to bind monospecifically to GRP125 (see below) and could be used to determine the subcellular distribution of GRP125 in vegetative and aggregating Dictyostelium cells.
Immunofluorescence labeling of growth phase cells revealed a pattern of
numerous fluorescent punctae, which are dispersed throughout the
cytoplasm (Figure 3, A and B). These
punctae are heterogeneous in terms of their fluorescence intensity
(Figure 3, A and B). The extensive intracellular distribution of the
punctate GRP125 label, confirmed by confocal microscopy (our
unpublished results), resembles the staining pattern of vesicular
compartments in Dictyostelium; for example, it is related to
the pattern of dispersed Golgi vesicles during cell division (Schneider
et al., 1998
). These data suggest that GRP125 localizes to
intracellular vesicles. Confocal microscopy showed that the fluorescent
label was confined to those vesicular structures and not free in the cytoplasm (our unpublished results). GRP125 appeared to localize at the
cytoplasmic outside of vesicles, which is supported by the observation
that GRP125 is found predominantly in the soluble, cytoplasmic
fraction. More than 70% of the cellular GRP125 pool sorts to the
soluble fraction upon detergent-independent cell rupture in the absence
of Ca2+ (our unpublished results).
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Between 3 and 6 h after starvation, Dictyostelium cells
rearrange their microfilament cytoskeleton and adopt a polarized
morphology with a distinct leading front and trailing edge, and this
state is associated with rapid chemotactic motility. Figure 3, C and D,
shows that the localization of GRP125 in aggregation- competent D. discoideum cells is very similar to that observed in
growth phase cells. Unlike other gelsolin-related proteins that perform a structural function, GRP125 does not accumulate at the cell cortex or
at lamellipodia of motile cells (Brock and Pardee, 1988
; Hofmann,
1994
).
Homologues of GRP125 Are Expressed in D. discoideum
In an effort to screen for other gelsolin-related proteins in
Dictyostelium, Southern blot analysis was performed using
the genomic region encoding segments 3 and 4 of GRP125 as a probe (probe F2). The single bands observed under conditions of high stringency suggest the presence of a single GRP125 gene in the Dictyostelium genome (Figure
4). However, under these lower-stringency conditions, three different, clearly visible bands were found (Figure
4, left). These cross-hybridizing fragments did not correspond to
restriction products of the well-characterized gelsolin-related genes
in Dictyostelium, severin, and protovillin because of the different fragment sizes observed in Southern blot analysis (our unpublished results). For example, the EcoRI digest produced
cross-hybridizing fragments of 2.6, 2.9, and ~20 kb, which differed
from the 3.8-kb fragment obtained from the severin gene (André
et al., 1988
) and the 6.6- and 11-kb fragments from
the protovillin gene (Hofmann et al., 1993
). One of these
three genes appeared to be very similar to the GRP125 gene, because its
cross-hybridization to the probe persisted even under conditions
corresponding to medium stringency (Figure 4).
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Immunoblots of total protein extracts of D. discoideum were probed using the polyclonal anti-GRP125/S3S4
antibody. Whereas the polyclonal anti-GRP125/S2S3 antibody specifically
recognized GRP125, the polyclonal anti-GRP125/S3S4 antibody strongly
bound to a second protein of slightly higher electrophoretic mobility (Figure 5A). The second protein band
labeled by the anti-GRP125/S3S4 antibody does not correspond to a
proteolytic breakdown product of GRP125, as revealed by a distinct
regulation and the unaltered expression of this protein in the
GRP125-null background (see below). The apparent molecular masses
measured by SDS-PAGE analysis were 142 kDa for GRP125 and 134 kDa for
the second, related protein. The following data also suggest that
GRP125 and the 134 kDa protein are homologous proteins: 1) the strength
and specificity of the reaction of the affinity-purified
anti-GRP125/S3S4 antibody against the 134 kDa protein; 2) their similar
apparent molecular mass; and 3) their similar pI of ~4.6 (our
unpublished results), which indicates a matching amino acid
distribution. The close similarity between GRP125 and the 134-kDa
protein supports our claim that the 134-kDa polypeptide is produced by
the gene that was found to be highly similar to the GRP125 encoding
gene in Southern blot analysis (see above; Figure 4; medium
stringency). The difference between the values calculated (124.8 kDa)
and measured (142 kDa) for GRP125 probably reflects a retarded mobility
of GRP125 caused by local hypercharges in its glutamate-rich stretches.
For example, lobster gelsolin has a high acidic content and migrates
with an apparent molecular mass 22 kDa larger than calculated (105 vs. 83 kDa; Lück et al., 1995
).
|
The distribution of GRP125 and its homologue was compared by immunofluorescence analysis using a variety of fixation protocols (Figure 3). From a series of immunofluorescence experiments an identical vesicle-like staining was observed for the anti-GRP125/S3S4 antibody (Figure 3, E-H), which recognized both homologous proteins and the GRP125-specific anti-GRP125/S2S3 antibody (Figure 3, A-D). These data suggest that both molecules localize to the same structures. Control experiments using only the secondary antibody showed no staining above background level (Figure 3, I and K).
Expression of GRP125 Is Developmentally Regulated
The expression of GRP125 during the developmental cycle of
D. discoideum was examined using filter-developed cells
(Figure 6, A-C). GRP125 is present in
vegetative cells in minor quantities. The transition from growth phase
(t0) to early aggregation phase (t9) led to an
increase in the level of GRP125 by almost one order of magnitude
(Figure 6C). The maximal GRP125 protein level in aggregation phase
cells (t9) is approximately maintained until the slug stage
(t15). Thereafter the GRP125 level rapidly decreased to
barely detectable amounts during culmination and fruiting body formation. Evidently, expression of GRP125 is tightly regulated during
development. Because GRP125 mRNA levels likewise increase by an order
of magnitude at the onset of starvation (our unpublished results), the
expression of GRP125 appears to be transcriptionally regulated. The
expression profile of the GRP125 homologue differed markedly from that
of GRP125, because the homologue was maximally expressed in vegetative
cells. The GRP125 homologue protein level gradually declined during
development to an amount in fruiting bodies (t24) that
equaled 50% of the protein in growth phase cells (Figure 6C).
|
Partitioning of GRP125 in Triton X-100-soluble and -insoluble Cellular Fractions
The distribution of GRP125 and its homologue in Triton
X-100-soluble and -insoluble cellular fractions was analyzed by
Western blotting using the anti-GRP125/S3S4 antibody, which recognizes both GRP125 and the GRP125 homologue (Figure 5B). The majority of
GRP125 was present in the Triton X-100-soluble fraction at all stages
of development, a feature that GRP125 shares with its homologue and
other proteins such as DdPlastin,
-actinin, DdLIM, GFP-DdLIM, and
tyrosine-phosphorylated actin (Jungbluth, 1996
; Marriott and Stocker,
unpublished results). However, a minor amount of GRP125 was found in
the Triton X-100-insoluble cellular material and was extracted
quantitatively on addition of Ca2+ to the Triton
X-100-insoluble material. In contrast, the small amount of the GRP125
homologue in the insoluble fraction was not eluted by Ca2+
(Figure 5B). Our data show that the majority of GRP125 is removed from
the cells by detergent treatment. The association of the remaining
population of GRP125 with the Triton X-100-insoluble fraction is
probably regulated by Ca2+, either through direct binding
of Ca2+ by GRP125 or through an interaction with a
Ca2+-regulated protein.
Inactivation of the GRP125 Gene
To understand the in vivo function of GRP125 and its role in
development, we prepared mutant cell lines lacking GRP125. The construct used for transfection of D. discoideum AX2
replaced the genomic region coding for residues Glu-181 to Ser-380 of
GRP125 with the blasticidin S resistance cassette (Bsr cassette; Sutoh, 1993
; Figure 7A). This approach was
designed to irreversibly inactivate the GRP125-gene via homologous
recombination. After transformation, blasticidin S-resistant clones
were tested for the absence of GRP125 in immunoblot
analysis using the anti-GRP125/S3S4 antibody. Three independent
GRP125-deficient mutants, GRP125
/17,
GRP125
/18, and GRP125
/C, failed to express
GRP125 (Figure 7B) and were chosen for further characterization. Using
an EcoRI-BglII digest, Southern blots of AX2 and
mutants were analyzed with the F1 probe that hybridized to a 2.8-kb
fragment of AX2 DNA (Figure 7C). At the DNA level the labeled fragment
of GRP125 mutants showed a shift up to 3.8 kb (Figure 7C). This
increase reflected the loss of the second EcoRI site in the
replacement construct, which added to the genomic 3' EcoRI
fragment a 1-kb part of the Bsr cassette. A hybridization experiment
using the Bsr coding region as a probe labeled the same bands as the
GRP125-specific probe and proved the integration of the construct into
the GRP125 gene. Solitary bands in Southern blot analysis demonstrated
single insertions of the construct into the GRP125 gene for mutants
GRP125
/18 and GRP125
/C. An additional band
in the restricted GRP125
/17 DNA indicated another, random
insertion of the construct into the Dictyostelium genome;
however, all three mutants were indistinguishable in respect to their
phenotypical characteristics.
|
Growth of GRP125
Cells and Progression through the
Developmental Cycle
Growth of Dictyostelium mutants on lawns of bacteria or
axenically in shaken suspension is a complex process that requires a
number of cellular functions such as cell division, phagocytosis, adhesion, locomotion, pinocytosis, and tolerance against shearing stress. To assess growth characteristics of GRP125
cells,
AX2 and mutant cells were inoculated on a lawn of E. coli B/2, and the increase in colony diameter was taken as a relative measure of the growth rate (Figure 8A).
GRP125
-colonies had growth rates that correlated
with those measured for AX2 cells. Furthermore,
axenically grown GRP125
cells were indistinguishable from
AX2 cells with respect to generation times and maximal cell densities
(Figure 8B). These data suggest that the cellular functions described
above appear intact in vegetative GRP125-deficient cells.
GRP125
cells are able to complete the developmental cycle
and passed through all stages of development without macroscopically
evident disorders (compare developmental stages of GRP125
and AX2 cells depicted in Figure 9C).
Mutant cells develop a regular feeding fringe; they are able to form
aggregates, slugs, and morphologically normal fruiting bodies with
functional spores. The timing of progression through development is not
altered by GRP125 deficiency.
|
|
The Pseudoplasmodium Stage of GRP125
Mutants Exhibits
a Defect in Phototactic Orientation
The expression profile of GRP125 during development suggests
it exerts its function late during aggregation or in the slug (compare
Figure 6). In the natural habitat of D. discoideum, an important survival task for the slug is to migrate
to the soil surface to ensure its progeny will be dispersed to more
favorable environments. The orientation of slugs toward a light source
is a critical prerequisite for this function (reviewed
in Fisher, 1997
). The ability of slugs of the GRP125-deficient mutant
to perform a phototactic response was analyzed in a phototaxis assay (Wallraff, 1997
). Figure 9A shows the migration paths of
GRP125
slugs compared with AX2 slugs. "Wild-type" AX2
slugs approached the light source starting from their point of
application in a straightforward manner, whereas the mutant slugs had
severe problems in their orientation. Initially, the mutant slugs moved
in the right direction, although they often made slight detours during this maneuver. However, shortly after this first phase,
GRP125-deficient slugs appeared to lose complete control of their
direction, most likely because they failed to readjust their
"homing" and progressively acquired a random walk behavior. After
3 d in the chamber, GRP125
slugs were found at
random locations with respect to the light source. In most cases they
made repeated turns in this final phase and crawled in small circles.
Circle paths were also found with wild-type AX2 slugs after
3 d of random walk in complete darkness. An evaluation of 109 trails (
1 cm) of GRP125
slugs did not produce a single
successful approach toward the light source. Most of the
GRP125
mutant slugs sporulated immediately at the point
of application on the plate, and in most cases less than four trails
were observed per plate. This corresponded to only a third of the
number of trails that AX2 slugs formed in this experimental setup.
GRP125 might therefore also be involved in the signal pathway that
controls a slug's decision to start migration or culminate immediately (Schindler and Sussman, 1977
; Williams et al., 1984
).
Significantly, GRP125
slugs were not
impaired in their ability to migrate over the agar plate. Control
experiments without light revealed no difference of the random walk
behavior of GRP125
slugs compared with AX2 slugs (Figure
9B). GRP125
slugs were able to migrate for long distances
in darkness, and similar numbers of trails were observed for AX2 and
GRP125
. The evident defect of GRP125
slugs
in the phototaxis assay is therefore a true phototaxis defect. To
further investigate the phototaxis defect, fruiting bodies of mutant
cells were analyzed for their photodetection and orientation toward a
light source. As seen in Figure 9C, GRP125-deficient fruiting bodies
were able to sense the direction of incident light, and they turned
toward the light source just as well as the fruiting bodies of AX2 cells.
Further Representatives of the GRP125 Type in Cells from Different Sources, Ranging from Lower to Higher Eukaryotes
Western blot analysis was performed on homogenates of cells from different sources using the affinity-purified polyclonal anti-GRP125/S3S4 antibody (Figure 5C). This antibody specifically labeled distinct protein bands with different molecular masses in lysates of Schizosaccharomyces pombe, SF9 cells, mouse brain tissue, macrophages, mouse and rat muscle tissue, and of NIH/3T3 fibroblasts. Because the antibody was directed against gelsolin-like segments 3 and 4 of GRP125, these proteins should belong to the gelsolin family of actin-binding proteins. Most of the proteins detected in the immunoblot shown in Figure 5C could not be attributed to sizes of known gelsolin-related proteins, and furthermore, the antibody did not recognize bona fide gelsolin-related proteins present in these lysates. For example, the anti-GRP125/S3S4 antibody did not recognize the 82-kDa gelsolin in mammalian cell lysates. Similarly the antibody did not cross-react with the 38-kDa CapG in the NIH/3T3 fibroblast lysate or with the gelsolin-like proteins severin (40 kDa) or protovillin (109 kDa) in the Dictyostelium lysate.
Immunofluorescence analysis of NIH/3T3 fibroblasts or human kidney
cells (293 cells; our unpublished results) using the anti-GRP125/S3S4 antibody exhibited a similar punctate labeling pattern as was observed
in Dictyostelium cells. A similar distribution was found by
microinjection of the polypeptide spanning residues Asp-60 to Leu-308
of GRP125 (corresponding to S2 and S3) into NIH/3T3 fibroblasts. This
peptide was found to be specifically incorporated into vesicle-like
structures that were previously observed in the immunofluorescence
analysis (Figure 3, L and M). The punctate label of GRP125 in
Dictyostelium parallels that of supervillin in Madin-Darby
bovine kidney cells (Pestonjamasp et al., 1997
); however, the proteins reveal different distributions. The identical localization of a rhodamine-labeled GRP125/S2S3 peptide to
vesicular compartments in mouse fibroblasts suggests the homologous
proteins in mouse and Dictyostelium might share a related function.
| |
DISCUSSION |
|---|
|
|
|---|
Gelsolin, severin, and several of their relatives control
microfilament length, number, and availability of barbed ends on actin
filaments for polymerization (Weeds and Maciver, 1993
; Eddy et
al., 1997
; Han et al., 1997
). These proteins are
generally active at cellular sites that continually require dynamic
regulation of actin filament length, such as lamellipodia and the cell
cortex. The difference in the subcellular distribution of GRP125 in
D. discoideum compared with other gelsolin-like proteins
suggests it is not involved in the protrusion of filopodia or
lamellipodia or the organization of cell shape. Rather, the
localization of GRP125 to structures that appear punctate in the
immunofluorescence experiments suggests a role more related to the
structure or function of intracellular vesicles.
We have argued on the basis of significant sequence similarity and
critical differences of GRP125 to members of the gelsolin family of
actin-binding proteins that GRP125 represents a new type of a
gelsolin-related protein. Fundamental differences in the
microfilament-directed activities of GRP125 compared with other
gelsolin-related proteins are anticipated by analyses of their primary
structures. Gelsolin-like proteins contain six different segments
schematized in Figure 1A. The S1 domain is completely absent in GRP125,
and furthermore, significant deviations from consensus sequences exist
in the S1S2 linker region and in the first part of S2. According to
models of gelsolin domain structure-activity relationships, these
deletions should result in a loss of several gelsolin-related protein
functions: high-affinity capping of actin filaments depends on
activities that reside in S1 (Weber et al., 1991
; McLaughlin
et al., 1993
), whereas an efficient severing activity also
requires sites at the beginning of S2 (Kwiatkowski et al.,
1985
; Way et al., 1989
; McGough et al., 1998
).
Critical differences in the S2 domain would also suggest that GRP125
lacks actin nucleation activity. A corresponding stretch deleted in the
S2 segment of protovillin is considered responsible for the inability
of protovillin to nucleate filaments (Hofmann, 1994
).
Similar to GRP125 in D. discoideum, gelsolin in mammalian
cells is solubilized to a large extent by treatment with Triton X-100
under Ca2+-free conditions at neutral pH (platelets
[Barkalow et al., 1996
], nonadherent neutrophils [Wang
et al., 1997
], myoblasts [Scholz and Hinssen, 1995
], and
polymorphonuclear leukocytes [Watts et al., 1995
]).
However, in Dictyostelium Ca2+ treatment
coelutes GRP125 along with a specific set of microfilament proteins
from the Triton X-100-insoluble fraction (Jungbluth et al.,
1995
; Prassler et al., 1997
, 1998
), suggesting that GRP125 associates with the actin cytoskeleton. Actin is known to be involved in anchoring and transport of vesicles (Kuznetsov et
al., 1992
; Muallem et al., 1995
; van Deurs et
al., 1995
). Defaque et al. demonstrated a crucial role
of the actin-binding protein ezrin and phosphoinositides for actin
nucleation on phagosomal membranes (Defacque, Habermann, Egeberg,
Diakonova, Roy, Mangeat, Voelter, Marriott, Pfannstiel, Faulstich, and
Griffiths, unpublished data), and other actin-binding proteins
are known to associate directly or indirectly with actin on the surface
of the phagosome (Desjardins et al., 1994
). Based on data
presented herein, it is not unreasonable to speculate that GRP125 acts,
directly or indirectly, at the interface of actin and intracellular vesicles.
Experiments with bacterially expressed GRP125 fragments did not
reveal direct binding of GRP125 segments 2 and 4 to F- or G-actin (our
unpublished results), as has been observed for other gelsolin relatives
(Way et al., 1989
; Eichinger and Schleicher, 1992
; Pope
et al., 1995
). These data do not necessarily rule out a
microfilament association of GRP125, because it might involve both
GRP125's gelsolin core and its additional N- and C-terminal domains
that constitute approximately half of GRP125's residues. The long
actin-binding helix of S2 is conserved in GRP125, whereas the
C-terminus of GRP125 reveals basic patches that might resemble potential cryptic actin-binding sites (e.g., KDKRK and KKNKNKNKKKHNR). Furthermore, because the function of GRP125 apparently does not involve
modulation of actin filament dynamics, a direct interaction with actin
itself is not obligatory. One or more actin-binding proteins could
mediate the association of GRP125 with the actin cytoskeleton, for
example, through its presumptive coiled-coil regions (Lupas, 1996
).
Interestingly, the computed coiled-coil region originating in the
poly-glutamate run of GRP125 represents an extension on the exposed
S5S6 linker described in horse plasma gelsolin (Burtnick et
al., 1997
). Our sequence analysis predicted that the EEVK repeats
are evidently not required to stabilize coiled-coil formation, and
these repeat motifs may be involved in the recognition of a target protein.
A search for genes or gene products related to GRP125 using DNA and
protein probes directed against segments 3 and 4 of GRP125 failed to
label known members of the gelsolin family, such as gelsolin, capG,
adseverin, severin, and protovillin. On the other hand, several
proteins were specifically detected in Dictyostelium samples
or heterologous homogenates of lower and higher eukaryotes. We
therefore suggest that these putative gelsolin-like genes and their
products show a closer similarity to GRP125 than to prototypical gelsolin. The different molecular weight of the proteins detected by
the anti-GRP125/S3S4 antibody is of particular interest, because recent
publications have described gelsolin-related proteins with unusual
segment organizations. Twinfilin from yeast exhibits two cofilin-like
domains (Van Troys et al., 1997
; Goode et al.,
1998
), and murine adseverin (D5) misses the fifth gelsolin segment
(Robbens et al., 1998
). Gelsolin-related proteins of the
GRP125 type are well represented in the D. discoideum
genome, because in addition to a GRP125 homologue at least two other
GRP125-like proteins were identified by Southern blot analysis.
Although GRP125 and its homologue share similar molecular masses, pIs,
and subcellular localization, they have distinct expression patterns
during development, and the gene products differ in their
Ca2+-dependent association with the Triton X-100-insoluble
cellular fraction.
In Dictyostelium, different stages during development
require particular activities of the actin cytoskeleton, which are
governed by expression of specific actin-binding proteins. Within
6 h of starvation, individual cells become polarized and highly
motile, whereas at 12-16 h a tissue-like pseudoplasmodium must achieve the concerted movement of its ~100,000 cells in its search for light
and a favorable temperature (reviewed by Gerisch, 1987
; Fisher, 1997
;
Fisher et al., 1997
). GRP125 is barely present in vegetative
cells, and accordingly, GRP125-deficient cells grow normally. In
general, GRP125-null cells were only marginally perturbed during most
of the different developmental stages. However, a clear-cut primary
defect of the knock-out mutant was observed at the multicellular
pseudoplasmodial stage. Lack of GRP125 causes a progressive
degeneration of the ability of slugs to readjust their orientation
toward the light. The initial phototactic reaction of GRP125-null slugs
suggests that GRP125 itself is not responsible for the detection of
light. This is confirmed by the fact that GRP125-deficient fruiting
bodies are able to detect light and to respond by turning toward the
source. Thus, the orientation toward a light source may be another
instance of similar signaling pathways operating in slugs and fruiting
bodies (Bonner et al., 1985
, 1988
; Feit et al.,
1987
). Because the same type of cells, the (pre)stalk cells, control
photodetection and phototactic behavior, identical components and
mechanisms appear to be engaged for light detection both in slugs
(Fisher, 1997
) and in fruiting bodies, and evidently this process is
not affected in fruiting bodies lacking GRP125. Moreover, GRP125-null
slugs are perfectly able to migrate without GRP125. Apparently, it is
the sustained readjustment of the orientation to light that is impaired
in the absence of GRP125. We have argued that features of its primary
structure predispose GRP125 to having an adapter function (see above),
and this might couple photodetection to the locomotory apparatus of cells in the slug. In this context it is interesting that the association of a fraction of GRP125 with the Triton X-100-insoluble cellular material is determined by the presence of Ca2+,
which is a central signal transduction component in phototaxis (Fisher,
1997
).
Both the molecular and the functional characterization introduce GRP125 as a new type of a gelsolin-related molecule. This new type of a gelsolin-related molecule may be involved in providing a functional connection between intracellular vesicles and the microfilament cytoskeleton. GRP125 is evidently indispensable during phototactic migration of Dictyostelium pseudoplasmodia: in the natural habitat of D. discoideum, GRP125-deficient slugs would most often fail to approach the soil surface. Without access to the surface, fruiting bodies produced in the course of development would not be able to disperse their spores to locations with a sufficient supply of bacteria. We conclude therefore that GRP125 is essential for propagation and thus viability of Dictyostelium cells.
| |
ACKNOWLEDGMENTS |
|---|
We thank S.A. Smith and A. Baskaya for assistance in the preparation of mAbs and G. Rahn for iodination of antibodies. We are grateful to Drs. J. Faix, I. Hangen-Mordi, M. Maniak, J. Prassler, and E. Wallraff for stimulating discussions and experimental advice. This work was supported by a grant from the Max-Planck Society (MA 215) to G.M. The DNA sequence described in this paper has been assigned GenBank accession number U95159.
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FOOTNOTES |
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* Corresponding author.
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REFERENCES |
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