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Vol. 10, Issue 5, 1553-1568, May 1999


and
*Department of Biological Chemistry and Molecular Pharmacology
Harvard Medical School, Boston, Massachusetts 02115-5701; and
Department of Biochemistry and Molecular Biology, Institute of
Genetic Science, Yonsei University College of Medicine, 134 Shinchon-dong, Seodaemun-Gu, Seoul, Korea
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ABSTRACT |
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The MAP kinase Fus3 regulates many different signal transduction
outputs that govern the ability of Saccharomyces
cerevisiae haploid cells to mate. Here we characterize Fus3
localization and association with other proteins. By indirect
immunofluorescence, Fus3 localizes in punctate spots throughout the
cytoplasm and nucleus, with slightly enhanced nuclear localization
after pheromone stimulation. This broad distribution is consistent with
the critical role Fus3 plays in mating and contrasts that of Kss1,
which concentrates in the nucleus and is not required for mating. The
majority of Fus3 is soluble and not bound to any one protein; however,
a fraction is stably bound to two proteins of ~60 and ~70 kDa.
Based on fractionation and gradient density centrifugation properties,
Fus3 exists in a number of complexes, with its activity critically
dependent upon association with other proteins. In the presence of
factor, nearly all of the active Fus3 localizes in complexes of varying size and specific activity, whereas monomeric Fus3 has little activity.
Fus3 has highest specific activity within a 350- to 500-kDa complex
previously shown to contain Ste5, Ste11, and Ste7. Ste5 is required for
Fus3 to exist in this complex. Upon
factor withdrawal, a pool of
Fus3 retains activity for more than one cell cycle. Collectively, these
results support Ste5's role as a tether and suggest that association
of Fus3 in complexes in the presence of pheromone may prevent
inactivation in addition to enhancing activation.
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INTRODUCTION |
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The mating pathway of Saccharomyces cerevisiae is a
simple model for negative growth control and differentiation by a MAP kinase cascade. In the presence of mating pheromone, haploid cells of
opposite mating type stop dividing and mate. Mating is marked by the
transcription of many genes, cell division arrest in G1 phase, and changes in cellular morphology that result in a uninuclear pear-shaped cell (or shmoo) that can fuse with a partner cell into a
zygote (Sprague and Thorner, 1993
).
Mating is regulated by one of the best characterized MAP kinase
cascades to be described for any eukaryotic cell. A working model
(Gustin et al., 1998
; Leeuw et al., 1998
) has
emerged to explain how the pheromone signal is transmitted from the
plasma membrane to Fus3 and Kss1, two MAP kinases (MAPKs) that provide unique and overlapping functions required for the many responses. Signaling begins when peptide pheromones secreted from each cell type
bind to receptors on the opposite cell type. The receptor is then
thought to interact with a heterotrimeric G protein to promote exchange
of guanosine diphosphate for guanosine triphosphate on G
and its
dissociation from G
. The G
subunit directly sends the signal
through Ste20. The signal is then sent from Ste20 to the MAPKK
kinase Ste11 by a mechanism that may involve direct phosphorylation of
Ste11 by Ste20. The Ste50 protein may also regulate activation of
Ste11, although it is not essential for signal transduction.
Ste11 directly activates a MAPK kinase Ste7, which directly activates
the two MAP kinases, Fus3 and Kss1.
Activation of Fus3 and Kss1 results in the phosphorylation of
numerous substrates, many of which include pathway components (Elion
et al., 1993
; Errede et al., 1993
; Peter et
al., 1993
; Choi et al., 1994
; Kranz et al.,
1994
; Bardwell et al., 1996
; Cook et al., 1996
;
Tedford et al., 1997
). Genetic and biochemical evidence
suggests that whereas Fus3 and Kss1 have both overlapping and
nonoverlapping substrate specificity, Fus3 plays a significantly greater role in the control of mating. Fus3 and Kss1 both contribute to
the activation of the transcription factor Ste12 (Elion et al., 1991
; Gartner et al., 1992
; Cherkasova et
al., 1999
; Farley et al., 1999
), consistent with their
mutual ability to phosphorylate Ste12 in vitro (Elion et
al., 1993
; Bardwell et al., 1996
). However, catalytically inactive Fus3 nearly completely blocks the ability of
Kss1 to activate Ste12-dependent genes whereas catalytically inactive
Kss1 only partially blocks the ability of Fus3 to activate Ste12-dependent genes (Madhani et al., 1997
; Cherkasova
et al., 1999
), suggesting that Kss1 may not play a
significant role in the activation of Ste12 in the presence of Fus3
(Madhani et al., 1997
). Fus3 also plays a larger role than
Kss1 in the control of G1 arrest. fus3 null
mutants are defective in G1 arrest, whereas kss1
null mutants are not (Elion et al., 1990
, 1991
; Cherkasova et al., 1999
). This defect is due to a nearly complete
dependency of the cyclin-dependent kinase inhibitor Far1 to be
phosphorylated by Fus3 and a major requirement for Fus3 in the
repression of G1/S cyclin genes (Peter et al.,
1993
; Tyers and Futcher, 1993
; Cherkasova et al.,
1999
). Fus3 also has essential roles in projection formation, partner
selection, and cell fusion that are not shared by Kss1 (Elion et
al., 1990
; Farley et al., 1999
). That Fus3 is more
critical than Kss1 for many of the responses to mating pheromone is
consistent with the fact that the FUS3 gene is expressed
predominantly in haploids and induced by mating pheromone (Elion
et al., 1990
) whereas the KSS1 gene is
constitutively expressed in haploids and diploids (Ma et
al., 1995
).
The activity of Fus3 is tightly regulated, presumably because
inappropriate activation would block vegetative growth. During vegetative growth, Fus3 is largely unphosphorylated and inactive (Gartner et al., 1992
; Elion et al., 1993
). Fus3
is prevented from being inappropriately activated by high osmolarity
during vegetative growth through cross-regulation by the Hog1 MAP
kinase (Hall et al., 1996
; O'Rourke and Herskowitz,
1998
). In the presence of mating pheromone, Fus3 is rapidly
phosphorylated and activated by Ste7 (Gartner et al., 1992
;
Elion et al., 1993
; Errede et al., 1993
)
and subsequently inactivated by at least three phosphatases (Msg5,
Ptp2, and Ptp3), presumably to allow cells to recover and reenter the
mitotic cycle in the absence of mating (Doi et al., 1994
; Zhan et al., 1997
).
The activation of Fus3 is strictly dependent upon Ste5, a scaffolding
protein that associates with multiple components of the mating MAP
kinase cascade (reviewed by Elion, 1995
, 1998
). Ste5 binds G
, Ste11,
Ste7, and the MAP kinases through separate binding sites and tethers
the kinases into a high-molecular-weight complex (Choi et
al., 1994
; Kranz et al., 1994
; Whiteway et
al., 1995
; Lyons et al., 1996
). Ste5 associates with
free G
that is liberated by pheromone (Feng et al., 1998
)
through a RING-H2 metal-binding motif (Inouye et al.,
1997
; Feng et al., 1998
). This association is
essential for activation of Ste11 by Ste20 (Feng et al.,
1998
) and strongly argues that Ste5 directly channels the pheromone signal through the kinases. Ste5 oligomerizes both in the absence and
presence of pheromone (Yablonski et al., 1996
; Feng
et al., 1998
). Oligomerization is required for signal
transduction (Yablonski et al., 1996
), possibly for
signal relay from Ste11 down to the MAP kinases (Feng et
al., 1998
). Ste5 could function in part to assure proper
activation of Fus3 in the presence of pheromone, as well as to prevent
Fus3 from being activated by the wrong signal. In addition, Ste5 might
also regulate the access of Fus3 to substrates involved in mating and
G1 arrest through interactions with Far1 and Bem1, a
morphogenesis protein (Lyons et al., 1996
).
To better understand how Fus3 functions, we characterized Fus3 localization and association with other proteins under a variety of conditions. By indirect immunofluorescence, Fus3 localizes throughout the cytoplasm and nucleus, with a greater fraction in cytoplasmic punctate spots in the presence of mating pheromone. Fus3 is more broadly localized than Kss1, providing one explanation for Fus3's larger role in mating. The majority of Fus3 is soluble and not bound to any one protein; however, a fraction of Fus3 is stably bound to two proteins of ~60 and ~70 kDa. Fus3 exists in a number of complexes of widely varying size and specific activity, with ~5.3% in a 350- to 500-kDa complex that is thought to contain Ste5, Ste11, and Ste7. Strikingly, Fus3 in this highest molecular-weight complex is most active, whereas the monomeric pool has little activity. The ability of Fus3 to localize in this complex requires Ste5. This result supports Ste5's proposed role as a tether and suggests that complex formation may protect Fus3 from inactivation.
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MATERIALS AND METHODS |
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Media and Microbiological Techniques
Standard methods (Sambrook et al., 1989
) were used
for manipulation of Escherichia coli and for all recombinant
DNA manipulations. E. coli DH5
was the host for the
construction and propagation of plasmids. Yeast transformations were
performed as described previously (Ito et al., 1983
). All
yeast strains are isogenic to EY957, a bar1
derivative of
W303a (Elion et al., 1993
). Experiments were conducted with
EY957, EY940 (a fus3-6::LEU2 derivative of EY957;
Elion et al., 1993
) containing either pYEE121 (FUS3-HA URA3 CEN) or pYEE128 (FUS3R42-HA URA3 CEN) (Elion
et al., 1993
), and with EY1881 (a ste5
::
TRP1 ste11
::URA3 derivative of EY957), containing
pKC11 (pGAL1-STE11M TRP1 ADE2 CEN) and pKCS5
(pGAL1-STE7M HIS3 CEN) or pKC11R444
(pGAL1-STE11R444M TRP1 ADE2 CEN) and pKCS5R220
(pGAL1-STE7R220M HIS3 CEN). Yeast cells were grown in YPD or selective SC media with either 2% dextrose, 2% raffinose, or 2% galactose as described (Sherman et al., 1986
).
Phosphate-free medium was made essentially as described previously
(Rubin, 1975
). MgSO4 (10 ml, 1 M) was added to 1 l of
2× SC-Ura-Cys-Met medium lacking carbon source. Concentrated
NH4OH (10 ml) was slowly added with stirring, and phosphate
salts were precipitated for 30 min at room temperature. The medium was
filtered twice through 3-mm filters (Whatman, Clifton, NJ) with a
Buchner funnel, the pH was adjusted to 4 with HCl, and then the medium
was autoclaved.
Plasmids
pYEE1102 (FUS3-HA#5 CEN HIS3),
pYEE1100 (FUS3 CEN HIS3), pYEE121 (FUS3-HA#5 CEN
URA3), pYEE114 (FUS3 CEN URA3), pKC11
(GAL1-STE11M CEN TRP1 ADE2), PKCS5 (GAL1-STE7M
CEN HIS3), pKC11R444 (pGAL1-STE11R444M TRP1
ADE2 CEN), and pKCS5R220 (pGAL1-STE7R220M
HIS3 CEN) have all been described previously (Elion et
al., 1993
; Choi et al., 1994
; Kranz et al.,
1994
).
Preparation of Antipeptide Antisera
Five milligrams of a 15-residue peptide (EE1), corresponding to
amino acid residues 340-353 of Fus3 plus an N-terminal cysteine (synthesized by P. Kim, Whitehead Institute), was coupled to 10 mg of
keyhole limpet hemocyanin (KLH, Pierce Chemical, Rockford, IL) that had
been activated with 1.7 mg
m-maleimidobenzoyl-H-hydroxysuccinimide ester (Pierce
Chemical), according to manufacturers directions. The EE1-KLH
conjugate was dialyzed against PBS (10 mM sodium phosphate, pH 7.4, 150 mM NaCl), yielding 7.2 ml of conjugate at ~2 mg/ml protein (~50%
coupling efficiency); 2 mg of this conjugate was used for a series of
four injections to each of three rabbits (by East Acres Biologicals,
Southbridge, MA). An additional boost was made with 0.5 mg of EE1
conjugated to rabbit albumin (Sigma Chemical, St. Louis, MO), prepared
as for the EE1-KLH conjugate. All sera were partially purified by
ammonium sulfate precipitation (Ausubel et al., 1992
),
followed by dialysis against PBS, and stored in aliquots at
20°C.
To affinity purify antiserum (from rabbit R2377, which provided the
strongest immune response), the EE1-albumin conjugate was coupled to
Affi-gel 10 (Bio-Rad, Richmond, CA) according to manufacturer's instructions.
Factor Time Course
Cells (900 ml) were grown at 30°C to an A600 of
0.4-0.5 in SC-Ura medium (SC medium for EY957), and 50 ml were removed
as a zero time point.
Factor (synthesized by C. Dahl, Department of
Biological Chemistry and Molecular Pharmacology, Harvard Medical School) was added to a final concentration of 50 nM, and the culture was incubated at 30°C with shaking. Samples of 50 ml were collected at intervals over a 2-h period. The remaining 600 ml were then pelleted, washed once with 100 ml prewarmed sterile water, and then
resuspended in fresh 30°C medium, and 50-ml samples were then removed
at intervals over a 3-h period. All samples were immediately harvested,
washed with ice-cold water, and frozen in dry ice/ethanol and stored at
80°C. In parallel, 1 ml of each sample was fixed with 0.1 ml 37%
formaldehyde to monitor cell morphology. Fixed samples were stored
overnight at 4°C, washed three times with 0.1 M potassium phosphate
(pH 6.5), and then resuspended in 1 ml of this buffer and examined
microscopically. Three separate tallies of 100 cells each were made for
each sample.
In Vivo Labeling
Ten milliliters of a saturated culture grown in SC-Ura at 30°C
was pelleted, resuspended in 300 ml of prewarmed
SC-Ura-Cys-Met-phosphate-free medium and grown at 30°C for 8-10 h
to an A600 of ~0.4. To label with 35S, 10 ODs of cells were pelleted and resuspended in 5 ml of labeling medium containing 100 mCi 35S-trans-label (>1000 Ci/mmol;
ICN, Costa Mesa, CA) per ml, and incubated for 30 min with shaking at
30°C. Cells were induced with 125 nM
factor (final concentration)
by adding 5 ml more of labeling medium containing
factor (125 nM
factor was used because the cells are 2.5 times more concentrated
than other experiments done with 50 nM
factor). Uniduced cells were
treated identically, except that the labeling medium did not contain
factor. Cells were similarly labeled with
32PO4 using medium containing 0.5 mCi of
32PO4 (ICN) per 10 ODs of cells and a
prelabeling incubation that was twice as long.
Indirect Immunofluorescence
Staining of fixed cells was carried out essentially as described
previously (Elion et al., 1990
). Yeast cells were grown in SC-Ura to an A600 of ~0.5. Cells were found to form
better shmoos if induced in YPD medium rather than SC medium;
therefore, cultures were pelleted and resuspended in YPD medium
containing 50 nM
factor and incubated for 2 h at 30°C. Cells
were fixed by adding 0.1 volume of 37% formaldehyde and 0.1 volume of
0.1 M potassium phosphate (pH 6.5) and incubating samples on ice for
2 h. Samples were washed three times with sterile water, once with
Buffer A (0.1 M potassium phosphate, pH 6.5, 1.2 M sorbitol).
Spheroplasts were made by adding 10 µl
-mercaptoethanol, 100 µl
of 5 µg/ml Zymolyase 20T to 1 ml cells, and incubating 15 min at
30°C until 70% spheroplasted (i.e., phase dark). Samples were then
processed as described previously (Elion et al., 1995
) using
a 1:20 dilution of primary antibody in blocking buffer for 2 h at
30°C (12CA5 for hemagglutin [HA] epitope or 4A1 for tubulin) and
then preadsorbed secondary antibody (Cy3-conjugated affinity-purified
donkey anti-mouse IgG; Jackson ImmunoResearch Laboratories, West Grove,
PA) for 2 h at room temperature in the dark. To reduce background,
the secondary antibody was preadsorbed against yeast proteins by
diluting the antibody 1:1000 in blocking buffer containing 0.1% yeast
whole-cell extract, incubating for 1-2 h on ice, and pelleting
aggregates by centrifuging 10 min in a microfuge. Cells were viewed
with a Zeiss Axioskop microscope (Carl Zeiss, Thornwood, NY). Ilford HP5 Plus ASA 400 (black and white) or Fuji Super HGII ASA 100 (color)
film were used for photomicroscopy.
Cell Culture and Preparation of Yeast Extracts
Yeast strains grown in media containing 2% dextrose were
induced with 50 nM
factor as described previously (Elion et
al., 1990
, 1993
). Yeast strains containing
GAL1-inducible plasmids were grown overnight at 30°C in SC
selective media containing 2% glucose. The saturated culture was
diluted into selective media containing 2% raffinose and grown
overnight at 30°C to an A600 of 0.5-1.0. The raffinose
culture was pelleted and resuspended in selective media containing 2%
galactose at an A600 of 0.5 and grown at 30°C for 5-6 h.
Cells were treated with 50 nM
factor for 60 min after 5 h in
galactose. The cells were harvested, and extracts were prepared with
modified H buffer containing 10% glycerol and 250 mM NaCl as described
(Elion et al., 1993
; Kranz et al., 1994
).
Immunoprecipitation and Immune Complex Kinase Assays
All immune complex kinase assays were performed essentially as
described (Elion et al., 1993
). For glycerol gradient
fractions, 400 µl of gradient fractions were diluted with modified H
buffer containing 150 mM NaCl to 500 µl and incubated with 5 µg
12CA5 monoclonal antibody for 90 min on ice. Samples were then
centrifuged for 10 min at 16,000 × g to remove
insoluble aggregates, and supernatants were rocked with 30 µl Protein
A-Sepharose CL-4B (Sigma Chemical) for 90 min at 4°C. Samples were
pelleted and then washed five times with 1 ml of ice-cold modified H
buffer, followed by two washes with kinase buffer (Elion et
al., 1993
). Samples were resuspended in 20 µl kinase buffer
containing 1 µg casein, 20 µM cold ATP, 1 µCi
[32P]ATP (6000 Ci/mmol, Amersham, Arlington Heights,
IL) and incubated for 10 min at 30°C. Reactions were stopped
by the addition of 30 µl 2× Laemmli buffer (Sambrook et
al., 1989
). Samples were boiled for 5 min before electrophoresis.
Fus3 kinase activity was quantitated by determining the amount of
radioactivity incorporated into the phospho-casein bands using a
Beckman LS6500 Scintillation counter (Beckman, Fullerton, CA). The
basal kinase activity present in a fus3
strain that
lacked Fus3-HA (12% of 100% maximal activity) was subtracted from
each fraction. For plot data, relative values of Fus3-HA kinase
activity were normalized by the amount of Fus3-HA protein level in each
fraction of the glycerol gradient by densitometric scanning of exposed
films using a Bio-Rad Imager System (model GS-525) and Molecular
Analyst version 1.5 software. Similar analysis was done for
Fus3, Ste11M, and Ste7M. For each data point, the background was first
calculated (based upon triplicate averaging of equivalent background
areas of the films) and subtracted from each sample.
Immunoblot Analysis
The levels of Fus3, Fus3-HA, Ste11M, Ste7M, and tubulin were
determined by immunoblot analysis according to standard
procedures (Burnette, 1981
) with the modifications noted by Elion
et al. (1993)
. Proteins were detected with rabbit polyclonal
Fus3 antibody (Elion et al., 1993
), 12CA5 and 9E10
monoclonal antibodies (from the Harvard University Monclonal Antibody
Facility; Upstate Biotechnology, Lake Placid, NY; and Santa Cruz
Biotechnology, Santa Cruz, CA), 4A1 Drosophila tubulin
monoclonal antibody (gift of C. Holm; University of California, San
Diego), and a chemiluminescent detection kit (ECL, Amersham).
Glycerol Gradient Density Centrifugation
Glycerol gradient analysis was performed as described previously
(Kranz, 1993
) with the following modifications: 10 and 30% glycerol
(wt/vol) stocks were prepared in modified H buffer containing 150 mM
NaCl (Elion et al., 1993
). A linear 10-30% glycerol
gradient in a total volume of 11.4 ml was generated at 4°C in a SW41
polyallomer tube with a Hoefer SG13 gradient maker and peristaltic
pump. One hundred fifty microliters of whole-cell extract (20 mg/ml) in modified H buffer containing 150 mM NaCl were precentrifuged for 10 min
at 16,000 rpm in a microcentrifuge at 4°C, and the clarified supernatant was loaded onto the gradient. Gradients were centrifuged at
210,000 × g (35,000 rpm) at 4°C for 22 h in a
SW41 swinging bucket rotor. Samples were collected with a 10-µl
capillary pipet attached to narrow tubing, using a peristaltic pump to
withdraw 580-µl aliquots from the bottom of the tube. Aliquots were
collected at 4°C and stored at
70°C. Molecular weight standards
were prepared in the same way as the samples, by mixing albumin,
aldolase, catalase, and thyroglobulin to 1 mg/ml in H buffer with 150 mM NaCl, and loading 150 µl of the mixture on identically prepared
gradients. Samples for immunoblot analysis and kinase
assays were resolved on 8% polyacrylamide gels. Molecular weight
standards were resolved on 7% polyacrylamide gels that were then
stained with Coomassie Blue to localize the proteins.
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RESULTS |
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Fus3 Is Rapidly Inactivated upon
Factor Withdrawal but Retains
Residual Activity
To determine the extent of
factor control of Fus3, we examined
Fus3 activity during
factor addition and withdrawal, using phosphorylation of associated substrates as an assay for kinase activity (Elion et al., 1993
). Cells were incubated with
factor until the majority were arrested in G1 phase, after
which the
factor was washed out and the cells were allowed to
recover. Samples were taken at various time points and monitored for
cell morphology and Fus3 kinase activity using a strain containing a
functional Fus3-HA (Elion et al., 1993
) in place of native
Fus3. Fus3-HA was activated rapidly in response to
factor, as
measured by the phosphorylation of associated substrates in
Fus3-HA-immune complexes (Figure 1). The
increase in Fus3 activity correlated with increased tyrosine
phosphorylation and protein abundance (Figure 1; note that the
relatively low level of tyrosine phosphorylation at the 15-min time
point may be caused by sample loss in this particular experiment).
Fus3-HA began to lose activity at the 2-h time point, possibly from
induced levels of the Msg5 phosphatase (Doi et al.,
1994
).
Factor withdrawal led to a dramatic inhibition of
Fus3-HA kinase at the earliest time point taken, consistent with the
resumption of budding. Surprisingly, however, the inhibition of Fus3
was not complete. Some Fus3 activity still persisted for at least 180 min after
factor withdrawal, as evidenced by both tyrosine
phosphorylation of Fus3 and residual phosphorylation of Fus3-associated
substrates. The bulk of Fus3-HA did not change in activity through the
subsequent first cell cycle, suggesting that this basal activity of
Fus3 is not cell cycle regulated (although this does not rule out the
possibility of cell cycle-dependent regulation of a subset of Fus3
molecules). These results suggest that
factor induces a form of
Fus3 that is resistant to inactivation by phosphatases.
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The Majority of Fus3 Is Not Stably Associated with Any One Protein
Previous work argues that the coimmunoprecipitating substrates in
the Fus3 kinase assay are physiologically relevant (Elion et
al., 1993
; Choi et al., 1994
; Kranz et al.,
1994
; Lyons et al., 1996
; Tedford et al., 1997
).
The appearance of a highly reproducible profile of numerous associated
substrates in the Fus3-HA kinase assays during
factor addition and
withdrawal (Figure 1; substrates during withdrawal visualized by
prolonged exposure of the autoradiogram; our unpublished data),
suggests that a fraction of Fus3 is associated with a fixed set of
substrates that may be present at stoichiometric levels. We
immunoprecipitated Fus3-HA from in vivo labeled cells to determine
whether Fus3 stably associates with a subset of proteins. Because
potential substrates are likely to be dissociated once phosphorylated,
we compared extracts from cells labeled with 35S and
32PO4.
Immunoprecipitation of Fus3-HA from 35S-labeled extracts
under a variety of nondenaturing conditions (including those used in the Fus3 kinase assay) revealed two specifically associated proteins of
~70 and 60 kDa (Figure 2, sets 1-5,
molecular mass ~70 kDa; sets 1 and 3, molecular mass, ~60 kDa). The
two proteins associate nonidentically with Fus3. The 70-kDa protein
associated with Fus3 under all immunoprecipitation conditions tested
except for those of set 6 (0.1% deoxycholate, 0.1% SDS, 1% Triton-X
100), whereas the 60-kDa protein was less stably associated and only
detected under the conditions of set 3 (0.1% Triton X-100 without
added ovalbumin or bovine serum albumin (sets 1 and 2, respectively). If we assume that these proteins are not underrepresented for methionine and cysteine, then we can conclude that they are present in
the immune complex at levels considerably less than Fus3. We did not
detect any of the other proteins predicted to associate with Fus3 on
the basis of the kinase assays. Thus, the majority of Fus3 is not
stably associated with any one protein under these conditions, and the
substrates detected in the Fus3 kinase assay are represented as a
minority.
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Immunoprecipitation of Fus3-HA from
32PO4-labeled extracts (Figure
3) showed that Fus3 is the only major
phosphoprotein, although other minor phosphoproteins barely above
background can be detected (Figure 3A). Similar results were found
after varying the conditions of immunoprecipitation and after
ribonuclease (RNase) and deoxyribonuclease (DNase) digestion, even
though these variations improved the Fus3 signal. Thus, the vast
majority of Fus3 is not stably associated with a phosphoprotein and
must dissociate from its substrates once they are phosphorylated.
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Fus3 Localizes throughout Dividing and
Factor-Arrested
Cells
Fus3 was localized by indirect immunofluorescence. In dividing
cells, the Fus3-HA pattern (Figure 4A)
consisted of tiny spots throughout the cell with possible exclusion
from the vacuole and slightly enhanced localization in the nucleus.
This staining was specific to Fus3-HA, based upon the absence of
staining from cells that lack the HA epitope (Figure 4C). The
distribution of Fus3-HA changed in three respects upon stimulation with
factor. First, after a 10-min exposure to
factor, a greater
percentage of Fus3 appeared to be in the nucleus (compare Figure
5, A and B). With longer exposure to
factor (Figures 4C and 5C), the staining pattern was significantly more
intense and more punctate and appeared to be distributed throughout the
cell (seen best in Figure 4C). In addition, Fus3 no longer appeared to
be excluded from the vacuole, possibly because of its increased
abundance in the cytoplasm. Thus, Fus3 localization involves both the
nucleus and cytoplasm.
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The punctate pattern of Fus3 localization that was most apparant after
longer exposure to
factor is clearly distinguished from other
specifically localized proteins tagged with the HA epitope (Kranz,
1993
), such as Pmr1-HA, which localizes in the Golgi (Antebi and Fink,
1992
), Ssl2-HA, which localizes in the nucleus (Gulyas and Donahue,
1992), and
-galactosidase, which localizes nonspecifically in the
cytoplasm (Elion et al., 1995
). Thus, the spots may
represent the association of Fus3 with a novel macromolecular structure
or subcellular organelle. Mating pheromone may enhance the ability of
Fus3 to associate in the structures represented by the punctate spots
since they are more apparant after
factor treatment of cells.
Alternatively, it is possible that Fus3 associates with the same
structures in the absence of
factor but that we cannot detect them
due to lower levels of Fus3 and the limits of resolution.
A Fraction of Fus3 Is in a Complex That Sediments at 100,000 × g
To determine whether Fus3 is in a large macromolecular structure,
as suggested by the punctate staining pattern of Fus3 by indirect
immunofluorescence (Figure 4), we subjected whole-cell extracts to
high-speed centrifugation at 100,000 × g and
determined the proportion of Fus3 associated with soluble and insoluble
cell fractions. As a control, we assayed the amount of tubulin in the same samples. Under the lysis conditions used, microtubules are depolymerized and exist as soluble monomers (Barnes et al.,
1992
). Consistent with this, all detectable tubulin protein was present in the supernatant (Figure 6). The
majority of Fus3 was also in the supernatant, indicating that it is,
for the most part, a soluble enzyme. However, in contrast to tubulin,
10% of Fus3-HA was consistently found in the pellet of extracts made
from both uninduced and pheromone-induced cells. Thus, a proportion of
Fus3 is associated with very large macromolecular structures that are
stable to these extraction methods, and
factor does not affect the
amount of Fus3 that is associated.
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Fus3-Specific Activity Varies Greatly across a Glycerol Gradient
Gradient density centrifugation was used in parallel to high-speed
fractionation to determine the relative specific activity of Fus3 as a
monomer or when present in higher-molecular-weight forms that may not
be stable to the rigors of immunoprecipitation. Whole-cell extracts
were prepared from a Fus3-HA strain that was induced with
factor.
Samples were precentrifuged to pellet aggregates, and the supernatant
was then separated on a linear 10-30% glycerol gradient. Individual
fractions were assayed for the amount of Fus3-HA by
immunoblot analysis and for kinase activity using casein as
a substrate (Figure 7, A and B). Several
phosphoproteins were detected across the gradient, in addition to
phosphocasein; they may be the same associated substrates detected in
Fus3-HA kinase assays (Figure 1). The ~42-kDa phosphoprotein is
phosphorylated Fus3-HA (Elion et al., 1993
).
|
Fus3-HA sedimented broadly across the gradient (Figure 7B), in contrast
to more localized sedimentation profiles for the 55-kDa protein that
cross-reacts with 12CA5 and tubulin, which sediments as a monomer at 55 kDa under the same conditions (Kranz, 1993
). On the basis of
qualitative analysis using a chemiluminescent detection system (see
MATERIALS AND METHODS), the vast majority of Fus3-HA was associated
with other proteins (~81% of Fus3-HA in fractions 10-17). The
specific activity of Fus3 varied greatly across the gradient and did
not correlate with the abundance of the various sedimenting species
(Figure 7C). For example, although a significant fraction of Fus3
sedimented at or close to its monomeric size (e.g., the pool with a
lower apparent molecular mass than the 68-kDa standard), this pool had
lowest specific activity. The fraction of Fus3-HA with the highest
specific activity was the least represented (~5.3%) and sedimented
within a molecular weight range of 350-500 KDa (fractions 9-12). The
majority of active Fus3-HA (~35%) sedimented at a molecular mass of
~170-220 kDa (fractions 13-14), indicating it was associated in a
distinct complex(es). Thus, Fus3-HA exists in several distinct
complexes and has significantly higher specific activity when
associated with other proteins. Moreover, the position of Fus3-HA of
highest specific activity closely overlaps the position where Ste5,
Ste11, and Ste7 also cosediment (Choi et al., 1994
),
strongly suggesting that the Ste5-multikinase complex plays a key role
either in activating Fus3 or maintaining high activity.
A parallel glycerol gradient was done on extracts prepared from a
strain harboring catalytically inactive Fus3 (Fus3R42-HA). No
phosphorylation of casein was detected across this glycerol gradient
(Figure 8A) even in the fractions with
the highest levels of Fus3R42-HA protein (Figure 8B), indicating that
all of the phosphorylation of casein we detected for Fus3-HA (Figure
7A) was due to Fus3 activity. Phosphorylated Fus3R42-HA was weakly detected in fractions 10-17 upon prolonged exposure of the gel (Figure
8A). This phosphorylation may be caused by residual autophosphorylation activity of Fus3R42-HA (Elion et al., 1993
; Brill et
al., 1994
) or by phosphorylation by Ste7, which tightly associates
with Fus3 and cosediments with Fus3 in a glycerol gradient (Choi
et al., 1993
; Bardwell et al., 1996
). Longer
exposure of the Fus3R42-HA immunoblot (Figure 8C) indicated
that a greater fraction sediments at the bottom of the gradient
compared with Fus3-HA. Thus, Fus3R42-HA may associate more stably in
macromolecular structures than does Fus3-HA.
|
Fus3, Ste11, and Ste7 Do Not Cosediment in a High-Molecular-Weight Complex in the Absence of Ste5
To further support a role for the Ste5-multikinase complex in the
generation of a species of Fus3 of high specific activity, we localized
Fus3, Ste7, and Ste11 kinases on a 10-30% glycerol gradient using
extracts prepared from a ste5
strain. Because it is not
possible to detect native levels of Ste7 and Ste11 using available
polyclonal antibodies or monoclonal antibodies to tagged derivatives,
Ste7 and Ste11 were each overexpressed. Wild-type levels of native Fus3
were monitored. We compared the pattern of Fus3 sedimentation in
strains expressing both functional and nonfunctional forms of Ste11 and
Ste7 (i.e., Ste11R444 and Ste7R220), because previous work has shown
that a larger percentage of Fus3 associates with the inactive forms of
Ste11 and Ste7 (Choi et al., 1994
).
In the absence of Ste5, little or no Fus3 was found to sediment at the
position of 350-500 kDa (Figure 9, lanes
9-11) compared with what has been observed in the STE5
strain in Figure 7 or in a STE5 strain harboring GST-Ste5
(Choi et al., 1994
). A greater percentage of Fus3 was found
to sediment in a tighter peak between the 158- and 68-KDa molecular
mass standards. Similar results were found with functional and
nonfunctional Ste11M and Ste7M. Ste11M and Ste7M (as well as the
inactive forms) were found to sediment in novel peaks in the range of
~170-300 kDa. Ste11M and Ste7M each shift in opposite directions
compared with their sedimentation pattern in the presence of Ste5 (Choi
et al., 1994
), arguing that the pattern of sedimentation of
the three kinases is not due to an artifactual shifting of the entire
gradient. This result strongly argues that the sedimentation of Fus3 at
the 350-500 kDa position in the gradient is directly due to a
tethering function provided by Ste5.
|
| |
DISCUSSION |
|---|
|
|
|---|
Fus3 Localization Is Consistent with Its Critical Role in Mating
The indirect immunolocalization results suggest that Fus3 is
broadly distributed in mating cells, in accordance with functions in
the cytoplasm and nucleus. After brief exposure of cells to
factor,
Fus3 appears to concentrate somewhat at or within the nucleus,
consistent with the requirement for Fus3 in the activation of the Ste12
transcription factor (Elion et al., 1991
). After longer
exposure to
factor, Fus3 appears to localize throughout the cell,
with increased appearance in the cytoplasm. This cytoplasmic distribution agrees with the requirement for Fus3 in mating responses that may involve the cytoplasm, such as projection formation, partner
selection, and cell fusion (Elion et al., 1990
; Farley et al., 1999
). However, we do not detect an obvious
pool of Fus3 at the shmoo tip, as might be expected for functions in
partner selection and cell fusion. Localization of Fus3 at the shmoo
tip could involve a small population of molecules and not be
detectable, or it could involve a significant population of molecules
that associate transiently or in a manner that is not stable to the fixation procedures used for indirect immunofluorescence.
Pheromone may regulate the ability of Fus3 to either enter or exit from
the nucleus. For example, the enhanced nuclear localization of Fus3
after short-term exposure to
factor may be due to enhanced nuclear
import. Growth factor-induced nuclear import has been noted for
mammalian MAP kinases (Chen et al., 1992
; Gonzalez et al., 1993
; Lenormand et al., 1993
; Fukuda et
al., 1997
) that phosphorylate nuclear targets such as
transcription factors (Treisman, 1996
). While it is possible that
factor induces a selective turnover of subcellular pools of Fus3, this
seems unlikely because Fus3 abundance increases in response to
factor (Elion et al., 1993
). The enhanced cytoplasmic
localization observed after long exposure to
factor could be caused
by the synthesis of more Fus3 protein in the cytoplasm as well as
changes in the ability of Fus3 to either enter or exit the nucleus.
Fus3 is more broadly distributed in the cell than is Kss1, which is
localized almost exclusively in the nucleus (Ma et al., 1995
), thus providing one explanation for functional differences between the two kinases. Fus3 is more important than Kss1 for a number
of pheromone responses that may take place at or near the shmoo tip
(Elion et al., 1990
; Lyons et al., 1996
; Farley et al., 1999
) where the concentration of Kss1 is very
low (Ma et al., 1995
). Further work is needed to determine
the cellular location of phosphorylation events and the relative
contribution of the two kinases to substrate phosphorylation when both
kinases are present. For example, Fus3 makes a greater contribution to the up-regulation of the transcription factor Ste12 in response to
pheromone than does Kss1 (Elion et al., 1991
; Madhani
et al., 1997
), although both kinases are nuclear. Thus,
additional levels of specificity may mediate the different functions of
Fus3 and Kss1 during mating.
Fus3 Exists in a Variety of Complexes throughout the Cell
Our study suggests that in vivo, most of Fus3 (~81%) exists in
association with a variety of other proteins, rather than as a simple
monomer. First, by indirect immunofluorescence, Fus3 localizes
throughout the cell in discrete entities that appear as punctate
staining. This pattern of localization may be due to the concentration
of Fus3 in large structures of some kind, for it contrasts the smooth
staining pattern seen for soluble proteins such as
-galactosidase
that localize nonspecifically throughout the cytoplasm (Elion et
al., 1995
). The punctate pattern is not reminiscent of a
particular organelle such as the Golgi apparatus or secretory vesicles,
nor does it ressemble the pattern of actin or tubulin and therefore may
represent a novel subcellular superstructure or organelle. Second,
~10% of total Fus3 is pelleted at 100,000 × g,
indicating that a significant pool of Fus3 is in very large
macromolecular structures, consistent with the punctate pattern of
localization. Third, glycerol gradient density centrifugation of
preclarified concentrated extracts show that a significant fraction of
soluble Fus3 (~74%) is in complexes ranging in apparant size from
~70 kDa to > 500 kDa. Collectively, our analysis argues that
Fus3 is complexed to a variety of proteins, consistent with the fact
that it coprecipitates with numerous proteins (Elion et al.,
1993
; Choi et al., 1994
; Kranz et al., 1994
;
Bardwell et al., 1996
; Lyons et al., 1996
;
Tedford et al., 1997
). The fact that it is difficult to
detect any of these proteins in coimmunoprecipitation experiments of
35S-labeled extracts suggests either that these
associations involve a small pool of Fus3 or that they are not stable
to the conditions of the immunoprecipitation.
Active Fus3 Is Complexed with Other Proteins
A striking finding from our analysis is that the active
Fus3 is complexed to other proteins whereas monomeric Fus3 is largely inactive. All of the most active Fus3 was found in at least three pools
of higher molecular mass (in the ranges of 68-158, 158-232, and
232-500 kDa), suggesting that nearly all of the active Fus3 in the
cell is bound to other proteins. The majority of active Fus3 is found
in a discrete peak in the molecular mass range of ~158-200 kDa,
suggesting that it exists in a distinct complex of unknown identity.
One of these pools may contain Ste7/Fus3 complexes, which are known to
exist in the absence of Ste5 (Choi et al., 1994
;
Bardwell et al., 1996
). A second pool may involve Fus3 dimers, by analogy to ERK2 (Khokhlatchev et al., 1998
).
Although Fus3 may be unusual in its propensity to exist in complexes,
the notion that association with other proteins is required to maintain kinase activity may apply to other MAP kinases.
We find that Fus3 forms particularly stable complexes with two proteins
of ~60 and ~70 kDa (p60 and p70) both in the absence and presence
of mating pheromone. p60 and p70 could be novel or previously
identified in Fus3-immune complexes; their apparant size is relatively
similar to several Fus3 substrates, including Dig1/Rsr1 and Dig2/Rsr2
(~45 and ~65 kDa, respectively; Tedford et al., 1997
)
and Ste7 (~55 kDa; Bardwell et al., 1996
). Stable complexes involving MAP kinases have been reported elsewhere and include dimers between Ste7 and Fus3/Kss1 (Bardwell et al.,
1996
), Xenopus MAP kinase and Rsk (Hsiao et al.,
1994
), and c-Jun-NH2-terminal kinases and c-Jun
(Kallunki et al., 1994
).
Ste5 Is Responsible for Maintaining Ste11, Ste7, and Fus3 in a High-Molecular-Weight Complex and Maintaining Fus3 Activity
We previously suggested that Ste5 serves as a tether for Ste11, Ste7, and Fus3 on the basis of the fact that Ste5 provides separable binding sites for the three kinases and that the four proteins cosediment at a high molecular mass (~350-500 kDa) on a glycerol-density gradient. Here we demonstrate that the ability of Ste11, Ste7, and Fus3 to cosediment within this molecular mass range requires Ste5. In the absence of Ste5, all three proteins shift dramatically in their sedimentation profile, with no cosedimentation within the 350-500 kDa range. This simple result provides important evidence that Ste5 holds the kinases together in a complex.
Previous studies implicated Ste5 as serving an important role in the
activation of Fus3 (Choi et al., 1994
; Kranz et
al., 1994
). Fus3 is not activated by mating pheromone in the
absence of Ste5 (Choi et al., 1994
; Kranz et al.,
1994
), indicating that Ste5 is essential for its activity. In addition,
Fus3 associates with Ste5 in complexes that also contain Ste11 and Ste7
(Choi et al., 1994
), and overexpression of Ste5 stimulates
Fus3 activity and suppresses a variety of loss-of-function
fus3 mutations (Kranz et al., 1994
). However, the
dependence of Fus3 activity on Ste5 is not necessarily due to Ste5's
putative tethering function. For example, Ste5 is required for the
activation of Ste11 (Choi et al., 1994
) and plays a direct
role in the activation of Ste11 by G
(Feng et al.,
1998
) and therefore could enhance Fus3 activity indirectly. We present
two findings that argue strongly that Ste5 enhances the activity of
Fus3 through its function as a tether. First, we show that the pool of
Fus3 in a wild-type cell that has highest specific activity sediments
to a position in the gradient (~350-500 kDa) that has previously
been shown to contain Ste5, Ste11, and Ste7 (Choi et al.,
1994
). Second, we show that Ste5 is responsible for holding Fus3 in
this complex.
Association of Fus3 in Complexes May Protect Fus3 from Inactivation
Why does active Fus3 exist almost exclusively in complexes? It is
possible that complex formation via Ste5 and other proteins is required
to prevent inhibition of Fus3 in addition to mediating its activation.
Fus3 is largely inactive in the presence of
factor and immediately
inactivated upon
factor withdrawal (Figure 1), consistent with the
existence of multiple inhibitory phosphatases (Doi et al.,
1994
; Zhan et al., 1997
). The observation that a fraction of Fus3 becomes resistant to inactivation by phosphatases after
factor treatment (Figure 1) supports the notion that
factor induces a form of Fus3 that is protected from inactivation. One
possibility is that Fus3 is constitutively inactivated and that
pheromone induction overrides constitutive inhibitory forces. This
notion is consistent with the fact that all of the phosphatases that
are known to inactivate Fus3 are constitutively expressed in vivo and
are constitutively active in vitro (Msg5, Doi et al., 1994
; Ptp2 and Ptp3, Zhan et al., 1997
). In
addition, Fus3 tyrosine phosphorylation has been shown to be
constitutively inhibited by the high-osmolarity response pathway during
vegetative growth (Hall et al., 1996
). Consitutive negative
control of Fus3 might protect dividing cells from inappropriate arrest
and entry into the mating pathway. It is interesting to speculate that
Ste5 may prevent constitutive negative regulation of Fus3.
Does Catalytically Inactive Fus3 Regulate Signal Transduction during Mating?
A signifcant pool of monomeric Fus3 (~19% of total Fus3, if we
assume that it is the pool that is of lower apparant molecular mass
than the 68-kDa standard) is nearly completely inactive at a 1-h
factor induction time point (Figure 7). This pool could arise through
the action of contaminating phosphatases during our extract
preparation, or it could simply be the fraction of Fus3 that has not
been activated or has already been inactivated. The existence of an
inactive pool of Fus3 during the course of a pheromone response raises
the question of whether inactive Fus3 might have a function during
signal transduction. For example, catalytically inactive Fus3 could
attenuate signal transduction during mating through the
sequestration of activators or substrates. That the inactive pool of
Fus3 could serve an attenuating function is consistent with the ability
of catalytically inactive Fus3R42 to exist in variety of complexes
(Figure 8) and the precedence of inhibitory functions for catalytically
inactive forms of Fus3 and Kss1 during invasive growth (Cooke et
al., 1997; Madhani et al., 1997
). Recent genetic
evidence suggests that in a wild-type cell, catalytically inactive Fus3
inhibits active Fus3 and promotes recovery (Farley et al.,
1999
), consistent with this possibility.
| |
ACKNOWLEDGMENTS |
|---|
We thank Bill Braell for advice on glycerol-gradient density centrifugation, Tamar Enoch for advice on preadsorption of antibodies with yeast extracts, and Yvonne DeCelis for generating the prints for Figure 4. We also thank B.N. Lee, A. Leza, and V. Cherkasova for their comments on the manuscript and Mark Rose for helpful discussions. This research was supported by the following grants to E.A.E.: Harcourt Charitable Foundation Junior Investigator Award, American Cancer Society Junior Investigator Award, and National Institutes of Health grant RO1 GM-46962. K.-Y.C. was also supported by a grant from a basic research medical fund, Ministry of Education, Korea.
| |
FOOTNOTES |
|---|
Present address: Department of
Biochemistry, Brandeis University, Waltham, MA 02454-9110.
§ Corresponding Author: Elaine A. Elion. E-mail address: elion{at}bcmp.med.harvard.edu.
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REFERENCES |
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