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Vol. 10, Issue 7, 2393-2406, July 1999





*Service de Biochimie et de Génétique
Moléculaire, Commissariat à l'Energie
Atomique/Saclay, F-91191 Gif-sur-Yvette, France;
Department of Molecular, Cellular, and Developmental
Biology, University of Colorado-Boulder, Boulder, Colorado 80309-0347;
and §Department of Genetics, University of Washington,
Seattle, Washington 98195
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ABSTRACT |
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The MPS2 (monopolar spindle two) gene is one of several
genes required for the proper execution of spindle pole body (SPB) duplication in the budding yeast Saccharomyces
cerevisiae (Winey et al., 1991
). We report here
that the MPS2 gene encodes an essential 44-kDa protein
with two putative coiled-coil regions and a hydrophobic sequence.
Although MPS2 is required for normal mitotic growth, some null strains can survive; these survivors exhibit slow growth and
abnormal ploidy. The MPS2 protein was tagged with nine
copies of the myc epitope, and biochemical fractionation experiments show that it is an integral membrane protein. Visualization of a green
fluorescent protein (GFP) Mps2p fusion protein in living cells
and indirect immunofluorescence microscopy of 9xmyc-Mps2p revealed a
perinuclear localization with one or two brighter foci of staining
corresponding to the SPB. Additionally, immunoelectron microscopy shows
that GFP-Mps2p localizes to the SPB. Our analysis suggests that Mps2p
is required as a component of the SPB for insertion of the nascent SPB
into the nuclear envelope.
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INTRODUCTION |
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In the budding yeast, Saccharomyces cerevisiae, the
spindle pole body (SPB) functions as the sole microtubule organizing
center (Byers et al., 1978
; Hyams and Borisy, 1978
). The SPB
is embedded in the nuclear envelope (NE), which remains intact
throughout the cell cycle. From its position in the NE, the SPB
nucleates both cytoplasmic and nuclear microtubules from its
cytoplasmic and nuclear faces, respectively. To set up a proper bipolar
mitotic spindle, the SPB must be precisely duplicated during G1 of the cell cycle (Byers and Goetsch, 1975
). This process of SPB duplication is thought to occur through a conservative mechanism (Vallen et al., 1992
).
Several genes required for SPB duplication have been identified (Winey
and Byers, 1993
). Among them, the MPS2 (monopolar spindle two) gene is required for a late step in SPB duplication. At the restrictive temperature, cells mutant for MPS2
(mps2-1) contain duplicated SPBs, but the nascent SPB is
not inserted into the NE (Winey et al., 1991
). The defective
SPB lies on the cytoplasmic face of the NE, unable to nucleate nuclear
microtubules. As a consequence, the cells arrest in G2 of the cell
cycle with large buds and unsegregated DNA, which is associated with
the functional SPB. After continued incubation at the restrictive
temperature, mps2-1 cells overcome the mitotic arrest and
proceed through the cell cycle; however, the nuclear DNA is
asymmetrically divided: one cell receives all of the nuclear DNA and
the other (daughter) cell receives no DNA. Consequently, cells that
contain a mutant MPS2 gene display an increase in ploidy.
The NDC1 gene also functions at this late step in SPB
duplication: ndc1-1 mutant strains exhibit phenotypes that
are indistinguishable from mps2-1 strains at the nonpermissive temperature (Thomas and Botstein, 1986
; Winey et al., 1993
).
The SPB of S. cerevisiae is a disk-like structure composed
of six major layers, with the central layer, or plaque, in the same
plane as the NE (Bullitt et al., 1997
). The defective SPB in
mps2-1 and ndc1-1 mutant cells appears to lack
the inner (nuclear) plaque. It was originally proposed that Mps2p and
Ndc1p function to insert the nascent SPB into the NE, allowing the
inner plaque to form and nucleate microtubules on the nuclear face
(Winey and Byers, 1993
). Recently, Ndc1p was shown to be a shared
component of SPBs and nuclear pore complexes (NPCs) (Chial et
al., 1998
), consistent with a direct role for Ndc1p in the
insertion event.
In addition to the structural details of how the SPB is duplicated, it
is also important to understand the regulation of a such a crucial
aspect of the cell cycle. A major consequence of unregulated SPB
duplication is asymmetric chromosome division. Mutants that fail in SPB
duplication lead to aneuploidy (Schild et al., 1981
; Rose
and Fink, 1987
; Winey et al., 1991
), which is associated
with some human cancer cells (Lengauer et al., 1997
). The
regulation of cell cycle events by posttranslational modifications such
as protein phosphorylation and proteolysis is well documented (for
reviews see King et al., 1996
; Lew and Kornbluth, 1996
). Indeed, phosphorylation and ubiquitin-mediated proteolysis have been
implicated in the regulation of the SPB duplication cycle. The Mps1p
kinase is essential for proper SPB duplication (Winey et
al., 1991
; Lauze et al., 1995
). Interestingly, two
components of the SPB, Spc110p (Friedman et al., 1996
) and
Spc98p (Pereira et al., 1998
), are phosphorylated in a cell
cycle-dependent manner, and there is evidence that Mps1p may be
involved in the phosphorylation of Spc98p (Pereira et al.,
1998
).
There is also evidence that SPB duplication is regulated by the
ubiquitin-proteasome pathway (McDonald and Byers, 1997
). In this
pathway, specific proteolysis is mediated by the covalent attachment of
ubiquitin to substrate proteins, followed by targeting to the
proteasome where they are degraded (Hershko and Ciechanover, 1992
). The
first in vivo evidence supporting a role for the proteasome in a major
cell cycle transition came from the finding that some 26S proteasome
mutants arrest at the G2/M stage in the cell cycle (Ghislain et
al., 1993
; Gordon et al., 1993
). Recently, a proteasome subunit encoded by the PCS1 gene was shown to be required
for SPB duplication (Russell et al., 1996
; McDonald and
Byers, 1997
). A temperature-sensitive pcs1 strain arrests in
G2 of the cell cycle with large buds and unsegregated DNA, and electron
microscopy revealed that the arrested cells had a single, unduplicated
SPB. On the basis of this finding, it was postulated that
Pcs1p-containing proteasomes may play a role in the degradation of a
particular protein(s) that is specifically required for SPB duplication.
We report here the isolation of the MPS2 gene.
Interestingly, we identified MPS2 in a genetic screen with
CIM5, a gene that encodes a proteasome subunit required for
the G2/M transition (Ghislain et al., 1993
), thus linking
MPS2 to the ubiquitin-proteasome pathway. In addition, we
show that MPS2 encodes an integral membrane protein
localized to SPBs and the NE. We propose that Mps2p is directly
required for insertion of the nascent SPB into the NE.
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MATERIALS AND METHODS |
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Yeast Strains and General Methods
The yeast strains used in this study are listed in Table
1. Yeast media, growth conditions, and
genetic and molecular techniques were as described previously (Sambrook
et al., 1989
; Guthrie and Fink, 1991
). Yeast shuttle vectors
and yeast strains used in this study are congenic with S288C (Sikorski
and Hieter, 1989
). ILM2 was made by transforming CMY826 with the
ClaI-SacI fragment from pOC52 containing
PDS1-HA (Cohen-Fix et al., 1996
). MCL120 and MCL175 strains were made by integration at the URA3 locus of
the BsmI-linearized plasmid p20 or p30, respectively, in a
mps2
::HIS3 strain, followed by loss of the
complementing plasmid in nonselective medium. MCL123 was made by
transforming strain ILM2 with the EcoRI-linearized plasmid
p23 to direct integration at the MPS2 locus. SMY22-5a was
made by integrating 9xmycC-MPS2 at the URA3 locus
in the strain mps2
::KanMX/MPS2,
ura3-52/ura3-52, sporulating the diploid, and isolating
KanMX+, URA3+ meiotic
products. SMY28-2b is the product of a cross between HC32-1C
(spc42
::LEU2, TRP1:SPC42-GFP,
original spc42
::LEU2, TRP1:SPC42-GFP strain
provided by Ian Adams and John Kilmartin (Medical Research Council,
Cambridge, UK) and SMY22-5a
(mps2
::KanMX,URA3:9xmycC-MPS2). SMY1892 was derived from SMY11-13c (original strain, SWY809, provided by Susan Wente, Washington University, St. Louis, MO), and SMY22-5a. Yeast strains harboring URA3-containing plasmids were
counterselected by growth on media containing 5-FOA (United States
Biological, Swampscott, MA) as described previously (Boeke
et al., 1987
). Yeast strains harboring the KanMX4
gene were selected by growth on plates containing 25 µg/ml geneticin
(G418) (Wach et al., 1994
).
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MPS2 Isolation
The genomic plasmid bank used to clone MPS2 was a
URA3-marked genomic library (Rose and Fink, 1987
). Two
clones with overlapping inserts, designated E27 and E28, were able to
rescue the temperature-sensitive phenotype of mps2-1 cells.
Plasmid E13 was created by excising a 6-kb insert from E27 with
SalI and XhoI, then ligating it into the
SalI site of pRS313. The E13 plasmid was cut with
BamHI, excising a 2.6-kb BamHI fragment and was
then religated to create E14. Plasmid E150 was constructed by digesting
E14 with XhoI and XbaI and ligating this fragment
into the same sites of pRS316. To define the boundaries of the
complementing ORF, the E150 insert was digested from either side
to generate a nested set of partial deletions.
The MPS2 gene was sequenced with the Sequenase Version 2.0 DNA Sequencing Kit (Amersham International, Cleveland, OH) according to
the manufacturer. Our sequence is identical to that for YGL075c (Saccharomyces Genome Database). For sequencing of the
mps2-1 mutant lesion, genomic DNA was prepared from strain
Wx178-1a as described previously (Hoffman and Winston, 1987
). Primers
to MPS2 were used to generate a series of PCR fragments,
which were then used as templates for sequencing using the Sequenase
PCR Product Sequencing Kit (Amersham International).
Genetic Screen with cim5
MPS2 was also identified in a screen for genes whose
overexpression is toxic in a cim5 proteasome mutant at a
semipermissive temperature, but not in the wild-type strain. A
cim5-1 temperature-sensitive mutant (strain CMY765) was
transformed with a GAL1-regulated S. cerevisiae
genomic DNA expression library (Ramer et al., 1992
) in the
centromeric (URA3) pYES vector, (Elledge et al.,
1991
). Cells were plated to synthetic medium containing glucose but
lacking uracil (
Ura) and grown at the semipermissive temperature of
30°C. Approximately 30,000 colonies were then replica-plated to
selective media (
Ura) plates containing either glucose (no library
expression) or galactose plus raffinose (gal-raff) (overexpression
conditions) at the same temperature. Raffinose was added to facilitate
yeast growth on galactose. Colonies able to grow on the glucose plates but showing little or no growth on the gal-raff plates were selected. Only rho+ colonies showing the inhibitory effect
on the gal-raff plates in a URA3 plasmid-dependent manner
were selected for plasmid recovery in Escherichia coli.
CMY765 (cim5-1), CMY763 (cim3-1), and CMY826 (isogenic wild-type) strains were then transformed with the selected plasmids, and growth inhibition on the gal-raff plates at 30°C was
retested. Fourteen independent plasmids contained yeast DNA fragments
whose overexpression caused a specific inhibitory effect on growth of
the cim mutants. One of these DNA fragments corresponded to
the MPS2 gene.
Disruption of MPS2
Two different null alleles of MPS2 were constructed
using a PCR-based method (Baudin et al., 1993
). One allele
was made by replacing amino acids 116-387 with the HIS3
gene using the one-step method (Baudin et al., 1993
). The
other deletion was made by replacing the entire MPS2 ORF
with the Kanamycin resistance gene (Wach et al., 1994
;
Brachmann et al., 1998
), KanMX4, using a two-step
gene replacement technique (Rothstein, 1991
). Both the
mps2
::KanMX-containing fragment and the
mps2
116-387::HIS3 PCR product were used to
transform a wild-type diploid strain (D8BX5CA) as described previously
(Schiestl and Gietz, 1989
). HIS3 prototrophs or
G418-resistant isolates, respectively, were examined by PCR for the
correct recombination event.
Plasmids
p17: pCM190 (2 µ, URA3)-pTet-9mycN-MPS2.
Nine copies of
the myc epitope (EQKLISEEDL) were introduced after the initiation codon
by "gene SOEing" or overlap extension (Horton, 1995
).
Oligonucleotides TG1 (5'-CCCAGCTTTGTTTAAACATGCGCGGTGGCGGCCGCTCTAGA-3') and TG2 (5'-ATCAAACGCACCGTTACTCATCAGCCCGGGGGATCCACTAGT-3') were used to
amplify by PCR a DNA fragment containing the nine-myc epitope sequence
from a plasmid kindly provided by Kim Nasmyth (Institute of
Molecular Pathology, Vienna, Austria). Oligonucleotide TG1 introduces
an initiation codon in-frame with the first myc epitope, and TG2
contains a 3' 21-bp overlapping region with the 5' end of
MPS2 ORF. The 444-bp PCR-amplified fragment was called PCR-TG-A. The MPS2 ORF was PCR amplified from a
MPS2-containing plasmid (p2) using oligonucleotides TG3
(5'-ATGAGTAACGGTGCGTTTGAT-3') and TG4
(5'-CCAAAACTGCAGGGCCAAGGTTTAAAT-3'), and the 1185-bp PCR fragment was
called PCR-TG-B. In a subsequent PCR reaction, the overlap between
PCR-TG-A and PCR-TG-B served as a primer for extension using
oligonucleotides TG1 and TG4, creating a recombinant molecule containing the 9xmyc tag after the initiation codon in-frame with the
MPS2 coding sequence. The PmeI-PstI fragment
from the final PCR product was cloned into pCM190 (2 µ,
URA3, pTet) (Gari et al., 1997
) to
obtain p17. The function of the 9xmycN-MPS2 gene was
verified by its ability to suppress the mps2
temperature-sensitive mutant. In p17, 9mycN-MPS2 is
expressed from a tetracycline-repressible promoter.
p20: pRS306 (integrative, URA3)-9mycN-MPS2 and p23: pRS304 (integrative, TRP1)-9mycN-MPS2. A recombinant DNA molecule was generated by "gene SOEing" containing the endogenous MPS2 promoter and the 9mycN-MPS2 ORF. Oligonucleotides SOE1 (5'-GGTACCGGGCCCCCCCTCGAGG-3') and SOE2 (5'-TCTAGAGCGGCCGCCACCGCGCATACTTACGTTGTCAAAGACAG-AATT-3') were used to amplify by PCR a 671-bp fragment (PCR1) containing the endogenous MPS2 promoter from a MPS2-carrying plasmid. The 9mycN-MPS2 ORF and terminator sequences were PCR amplified from pCM190-pTet-9mycN-MPS2 (p17) using oligonucleotides SOE3 (5'-ATGCGCGGTGGCGGCCGCTCTAGA-3') and SOE4 (5'-ATGTCATGGGAGCTCTGGTTAGCTCACTCAT-TAG-3') (PCR2). The recombinant DNA fragment, containing the endogenous MPS2 promoter and the 9mycN-MPS2 ORF, was amplified using the overlap between PCR1 and PCR2 as a primer and oligonucleotides SOE1 and SOE4. The SacI-XhoI fragment from the final PCR product was cloned into pRS306 (integrative, URA3) or pRS304 (integrative, TRP1) vectors yielding p20 and p23, respectively. In p20 and p23, 9xmycN-MPS2 is expressed from its endogenous promoter.
p30: pRS306-GFP-3xmycN-MPS2. The GFP3 sequence from plasmid pYGFP3 (kindly provided by Brendan Cormack, Johns Hopkins Medical School, Baltimore, MD) was amplified by PCR using oligonucleotides GFP1 (5'-CCCAGCTTTACTAGTATGTCTAAAGGTGAAGAATTATTC-3') and GFP2 (5'-CCAAAAAGCACTAGTTTTGTACAATTCATCCATACCATG-3'). The SpeI PCR fragment was cloned into p20 digested with XbaI.
pRS306-9xmycC-MPS2.
Nine copies of the myc tag were
introduced at the termination codon of MPS2. The 9xmyc
sequence from plasmid 9xmycFZ01 (a gift from G. Hermann and
Janet Shaw, University of Utah, Salt Lake City, UT) was
amplified by PCR with primers 9xMycNXbaI and 9xMycCXbaI. The PCR fragment was digested with
XbaI and ligated into a unique SpeI site created by PCR
immediately before the termination codon in MPS2 (plasmid
pRS314.B). A 2.1-kb SacI/KpnI fragment from
pRS314 was subcloned into pRS306. The function of the fusion protein
was verified by the ability of pRS314-9xmycC-MPS2 to rescue
the mps2-1 temperature-sensitive phenotype and the
mps2
::KanMX4 strain.
Western Blot Analysis
Protein extracts were made from 25-ml aliquots of exponentially
growing cells (see Figure legends for strains). Cells were pelleted and
transferred to an Eppendorf tube in 150 µl of cold lysis buffer (50 mM Tris-HCl, pH 8, 0,3% Na deoxycholate, 1% Triton X-100, 0.2% SDS,
50 mM NaCl, 5 mM EDTA, 2 mg/ml each of pepstatin A, aprotinin,
leupeptin, chymostatin, and Pfablock plus 1 mM PMSF). An equal
volume of glass beads was added, and the cells were lysed by vortexing.
Extracts were then clarified by 15 min of centrifugation at 4°C, and
the supernatant was collected. Total cell protein (40 µg) was
denatured by boiling in SDS sample buffer and then separated on 10%
SDS polyacrylamide gels. Proteins were transferred to nitrocellulose
membranes (Hybond ECL, Amersham). 9xmycN-Mps2p was detected using the
9E10 anti-myc monoclonal antibody (Santa Cruz Biotechnology,Santa Cruz,
CA) at a concentration of 0.1 µg/ml, and Pds1p-HA was detected using
a 1:1000 dilution of 12CA5 anti-HA ascites fluid. Cdc28p, Sec61p, and
hexokinase were identified using polyclonal antibodies (van Tuinen and
Riezman, 1987
; Wilkinson et al., 1996
). To detect Dpm1p, the
5C5-A7 monoclonal antibody (Molecular Probes, Eugene, OR) was used at a
concentration of 4 µg/ml.
Subcellular Fractionation
Subcellular fractionation was performed essentially as described
(Harris and Waters, 1996
). MCL120 cells expressing 9xmycN-Mps2p from
the MPS2 promoter were grown in 250 ml of YPD at 24°C to an OD600 nm of 0.5-0.8, harvested by centrifugation, and washed two times in spheroplast buffer (50 mM Tris-HCl, pH 7.5, 1.2 M
sorbitol, 10 mM NaN3, 40 mM
-mercaptoethanol). Cells
were resuspended in spheroplast buffer at 40 0D U/ml. Zymolyase 100T (ICN, Costa Mesa, CA) was added to 300 µg/ml, and cells were
incubated at 30°C for 30 min with occasional mixing. The spheroplasts
were washed two times in spheroplast buffer and resuspended in 0°C lysis buffer (20 mM HEPES/KOH, pH 7.4, 100 mM K-acetate, 5 mM Mg-acetate, 1 mM EDTA 1 mM DTT) plus a protease inhibitor mixture (2 µg/ml each of pepstatin A, aprotinin, leupeptin, chymostatin, and
Pfablock plus 1 mM PMSF) to the same volume in which they were
spheroplasted. Cells were lysed in a 5-cm3 Dounce
homogenizer (25-30 strokes on ice), and then the lysates were
centrifuged at 4°C for 3 min at 1000 × g. The
resulting supernatant (crude extract) was centrifuged at 4°C for 15 min at 13,000 × g to generate pellet (P13) and
supernatant (S13) fractions. The S13 fraction was centrifuged at 4°C
for 60 min at 100,000 × g in a Beckman (Palo Alto, CA)
TL-100 centrifuge generating pellet (P100) and supernatant
(S100) fractions. Protein concentrations were determined using the
Bradford assay (Bradford, 1976
).
Mps2p was solubilized from the P13 fraction essentially as described
(Ruohola and Ferro-Novick, 1987
). The pellet was homogenized in lysis
buffer, divided into aliquots, and centrifuged at 13,000 × g for 15 min. The pellet for each sample was resuspended in lysis buffer (control) or in lysis buffer containing either 1 M NaCl,
50 mM Tris (pH 7.5)-10 mM EDTA, 0.2 M Na2CO3
(pH 11), 1% Triton X-100, or 6 M urea (other combined treatments are
indicated in the Figure legends). The mixtures were incubated on ice
for 10 min and then centrifuged at 13,000 × g for 15 min. The supernatant was removed, and the pellet was resuspended in an
equal volume of lysis buffer. Equivalent samples of the supernatant and
pellet fractions were analyzed by immunoblotting.
Cytological Techniques
Flow cytometry analysis of cells was performed as described
using the DNA stain propidium iodide (Winey et al., 1991
).
Stained cells were analyzed using a Becton Dickinson FACScan flow
cytometer using CELL QUEST software packages to collect and analyze the data (BDIS, San Jose, CA).
Whole-cell fluorescence microscopy (see Figure 6) was carried out
essentially as described by Chial et al. (1998)
, developed from Rout and Kilmartin (1990)
. Briefly, cells were grown at 24°C to
an OD600 between 0.2 and 0.8. Cells were pelleted and fixed in 3.7% formaldehyde for 5 min. Cells were spheroplasted in Solution A
(1.2 M sorbitol, 100 mM KPO4, pH 7.5) containing 4.8 µg/ml Zymolyase 100T (ICN) for 45 min at 30°C. Cells were rinsed
with PBSA (10 mg/ml NaCl, 0.2 mg/ml KCl, 1.43 mg/ml
KH2PO4), then resuspended in 50-100 µl of
Solution A. Cells (10 µl) were spotted onto a polylysine-treated
multi-well slide, then submerged in methanol followed by acetone.
Slides were treated with blocker (PBSA, 10 mg/ml BSA, 0.1% Tween-20)
for 5 min, followed by incubation in a 1:400 dilution of
-myc
antibody overnight at 4°C. The myc antibody was detected using either
a Texas Red-conjugated sheep anti-mouse antibody diluted 1:400 or an
FITC-conjugated sheep anti-mouse antibody diluted 1:200 (both from
Amersham), and the DNA was stained with DAPI. Standard fluorescence
microscopy was performed using a Leica DMRXA/RF4/V automated microscope
equipped with a digital camera (SensiCam CCD camera; Cooke, Tonawanda,
NY). Images were acquired and deconvolved using the Slidebook
software package (Intelligent Imaging Innovations, Denver, CO).
For visualizing GFP-Mps2p in living cells, a 2 ml aliquot of cells grown in YPD at an OD600 of 0.5-1.0 was collected and washed in water. Cells were resuspended in 50 µl of Dabco solution (24.5 mg/ml diazabicyclo 2-2-2 octane in PBS, 75% glycerol). The DNA was visualized with Hoechst at a final concentration of 5 µg/ml for 5 min.
Immunoelectron microscopy was performed as described previously (Winey
et al., 1995
; Ding et al., 1997
; Chial et
al., 1998
). Cells were high-pressure frozen in a Balzers HPM-010
High Pressure Freezer (Bal-Tec, Middebury, CT). Thin sections
were labeled with an affinity-purified anti-GFP rabbit polyclonal
antibody (a kind gift from Jason Kahana and Pam Silver, Dana-Farber
Cancer Institute and Harvard Medical School, Boston, MA) and reacted
with goat anti-rabbit 15-nm colloidal gold conjugate (Ted Pella,
Redding, CA), followed by rinses and staining with uranyl acetate and
lead citrate.
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RESULTS |
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Isolation of the MPS2 Gene
The MPS2 gene was isolated from a yeast genomic library
constructed in the centromeric plasmid YCp50 (Rose and Fink, 1987
) by
screening transformants of mps2-1 (Wx178-1a; Table 1) for those able to grow at the restrictive temperature of 37°C. The insert
in one of the two rescuing plasmids was subcloned, identifying a region
of 3.4 kb required for complementation. A nested deletion series was
used for sequence analysis of the 3.4-kb insert, and the minimal
complementing fragments were found to contain a single ORF that has
been identified as YGL075c by the Yeast Genome Project.
To confirm that YGL075c was truly the gene mutated in
mps2-1 strains, the original 3.4-kb insert was placed in
the integrative plasmid pRS306 (URA3). The insert in
pRS306-MPS2 directed integration at the MPS2
locus as determined by the meiotic linkage of the integrated marker
(URA3) to mps2-1. To further verify that YGL075c was indeed MPS2, the gene was amplified from the
mps2-1 strain (WX178-1a) and sequenced. A single base
change was detected at nucleotide 114 leading to an amino acid change
of a glutamic acid to lysine residue at position 39 in the protein
(Figure 1A). We confirmed that the base
change found in the mps2-1 strain was the cause of the
temperature-sensitive phenotype, and not a polymorphism, by cloning the
region containing the mutation into a yeast integrative vector to
create pRS306-mps2-1. Targeted integration at the
MPS2 locus, with excision of the wild-type copy of the gene,
conferred temperature sensitivity that is complemented by wild-type
MPS2 on a plasmid, but not by a cross to the
mps2-1 strain (our unpublished results). These results
indicate that YGL075c is the gene mutated in the mps2-1
strain.
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The MPS2 gene was also identified in a search for proteins
involved in the onset of anaphase. The cim3-1 and
cim5-1 mutations affect two different regulatory subunits
of the 26S proteasome (Ghislain et al., 1993
). Both mutants
arrest division at the G2/M transition with unsegregated chromosomes at
the restrictive temperature of 37°C, suggesting that one or more
proteins must be proteolyzed for cells to enter into anaphase. We
searched for proteins involved in this proteasome-mediated
metaphase/anaphase transition by screening for yeast genes whose
overexpression would inhibit growth in the cim5-1 mutant,
but not the wild-type strain, at the cim5-1 semipermissive temperature of 30°C (see MATERIALS AND METHODS). At this temperature, the cim5 mutant population of cells contains a higher than
normal fraction of cells containing a 2N DNA content, suggesting that inefficient degradation of mitotic substrates of the proteasome was
limiting the rate of cell division (Ghislain et al., 1993
). We reasoned that the overexpression of a gene encoding such a substrate, or a protein involved in this process, might inhibit the
growth of cells containing these mutant proteasomes. The overexpression of the MPS2 protein was toxic in these cells, suggesting
that Mps2p may fit these criteria.
The predicted Mps2p sequence is 387 amino acids long and shows no
strong sequence similarity to other proteins in the available databases
(Figure 1A). Mps2p has a predicted molecular mass of 44,587 Da
and a theoretical pI of 8.4. The Mps2p sequence contains a 17 amino
acid hydrophobic stretch (residues 311-327) as a putative transmembrane domain (Kyte and Doolittle, 1982
; Klein et
al., 1985
), three potential Cdc28 phosphorylation sites S/TPXK/R/Q (Songyang et al., 1994
), and four potential destruction box
sequences RXXLXXXXN/I (Glotzer et al., 1991
). In addition,
the Mps2p sequence reveals two regions capable of forming coiled-coils
by the algorithm of Lupas (Lupas et al., 1991
) (Figure 1B).
MPS2 Is an Essential Gene
To test whether MPS2 encodes an essential gene product,
part of the chromosomal copy of MPS2 was replaced by
homologous recombination with the HIS3 gene (see MATERIALS
AND METHODS). Sporulated diploid yeast strains heterozygous for the
null allele of MPS2 segregated a lethal mutation in tetrads
inspected a few days after tetrad dissection (AM610, Table 1).
Furthermore, the HIS3 marker for the null allele was not
recovered in these tetrads, showing that it cosegregated with the
lethal phenotype. The null allele could be recovered from sporulated
diploids only when they contained a plasmid-borne copy of
MPS2 (pRS316-MPS2). Furthermore, the
mps2 null strains that contained a URA3-marked,
plasmid-borne copy of MPS2 could not grow in the presence of
5-FOA, which induces plasmid loss, indicating that MPS2 is
essential; however, on continued incubation (10-14 d) at 23°C, the
dissection plates of diploids heterozygous for the null allele of
MPS2 would contain very slow growing "pinhead" colonies
that were found to contain the nutritional marker for the null allele
(Figure 2A). The appearance of these colonies was variable from strain to strain and cross to cross, but
approximately half of the spore clones containing a null allele eventually formed one of these very small colonies. On microscopic inspection of the dissected spores that did not form a small visible colony, most were found to have germinated and accumulated tens or
hundreds of cells before ceasing to grow further. Some of the null-containing spore clones could be cultured, and PCR analysis of
genomic DNA from these cells confirmed that they only contained the
null allele of MPS2 and had not acquired a wild-type copy of
the MPS2 gene (our unpublished results). Other null
alleles of MPS2, in which the entire gene was replaced, were
constructed throughout the course of this work, and all behaved
identically.
|
The ability to culture some of the strains containing the null allele
of MPS2 allowed partial characterization of these strains. They were found to grow very slowly, with doubling times of 10-20 h.
In addition, mps2 null strains are temperature-sensitive at 34°C. Unlike strains containing the mps2-1 mutation,
which arrest as large budded cells with good viability on return to
permissive temperature (Winey et al., 1991
), strains
containing a mps2 null allele did not show a uniform cell
cycle arrest and rapidly lose viability at the nonpermissive
temperature (our unpublished results). In the course of this analysis,
we found by analyzing their DNA content that the surviving null strains
were all apparent tetraploids (Figure 2B), with the exception of one
diploid strain. There is also a peak at <1N that may correspond to
either hypoploid cells or to debris from dead cells. The survival
mechanism for the strains containing a null allele of MPS2
is not known.
Mps2p Is Present throughout the Cell Cycle
As described previously, Mps2p contains four potential destruction
boxes (Figure 1A). The destruction box motif is required for the
ubiquitination and subsequent degradation of several proteins, including Pds1p, Ase1p, and the mitotic cyclins, in mitosis and in the
G1 phase of the cell cycle by the anaphase-promoting complex (APC)-proteasome pathway (Amon et al., 1994
; Cohen-Fix
et al., 1996
; Juang et al., 1997
). Degradation of
these proteins is important for the initiation of chromosome
segregation and for the exit from mitosis. Because Mps2p is toxic when
overexpressed in a proteasome mutant, we reasoned that Mps2p could be a
substrate for the proteasome. We tested whether Mps2p, like other APC
substrates, is an unstable protein in
-factor-arrested cells.
Although MPS2 mRNA levels are relatively constant through
the cell cycle (Cho et al., 1998
), we placed
MPS2, tagged with nine copies of the myc epitope, under the
control of a tetracycline-repressible promoter (Gari et al., 1997
), whose expression is negligible in the presence of high antibiotic concentrations in the growth medium (5 µg/ml) and low in
the presence of lower antibiotic concentrations (50 or 100 ng/ml). An
exponentially growing culture of cells expressing this low,
constitutive level of 9xmycN-Mps2p was treated with
-factor to
arrest cells in G1 phase before Start, a stage of the cell cycle
in which the APC is very active (Amon et al., 1994
). The quantity of 9xmycN-Mps2p was compared in the exponentially growing and
-factor-arrested cells by immunoblotting of total
cell extracts (Figure 3A). No decrease in
9xmycN-Mps2p levels was seen in the G1-arrested cells, suggesting that
Mps2p is unlikely to be degraded by the APC-proteasome pathway.
|
We also tested whether the level of Mps2p oscillates during the cell
cycle. For this experiment, 9xmycN-MPS2 was placed under the
control of its endogenous promoter and integrated at the
URA3 locus in a mps2
::HIS3 strain
that initially contained a plasmid-borne copy of MPS2. To
follow Pds1p levels under the same conditions, the wild-type
PDS1 gene was replaced with a construct encoding a
hemagglutinin epitope-tagged version of Pds1p, PDS1-HA
(Cohen-Fix et al., 1996
). Cells simultaneously expressing
9xmycN-Mps2p and Pds1-HAp were released synchronously from
-factor
arrest. Cell morphology and 9xmycN-Mps2p, Pds1-HAp, and Cdc28p levels
were determined at various timepoints after release from the
-factor arrest (Figure 3B). Levels of 9xmycN-Mps2p were roughly constant compared with the unvarying Cdc28p, except during the G1-S phases, in
which 9xmycN-Mps2p appeared to decrease slightly. In contrast, Pds1-HAp
completely disappeared from G1-arrested cells, as described previously
(Cohen-Fix et al., 1996
). We conclude that the level of
9xmycN-Mps2p does not oscillate significantly in the cell cycle of
S. cerevisiae; however, we cannot exclude the possibility
that the tagged version of Mps2p is somehow resistant to this type of regulation.
Mps2p Is an Integral Membrane Protein
Mps2p contains a 17 amino acid hydrophobic segment that could
correspond to a transmembrane domain. Biochemical fractionation experiments were undertaken in cells expressing 9xmycN-Mps2p at its
normal endogenous levels (MCL120) to test whether Mps2p is a membrane
protein. Extracts obtained by gentle spheroplast lysis were
fractionated by differential centrifugation at 13,000 × g for 15 min followed by 60 min at 100,000 × g (see MATERIALS AND METHODS). At each stage, the
supernatants and pellets were collected and analyzed by
immunoblotting. Mps2p fractionated with nuclei and
endoplasmic reticulum (ER) membranes in the 13,000 × g
pellet (P13) and was undetectable in the supernatant or in the pellet obtained after 100,000 × g centrifugation (S100 or
P100 fractions, respectively) (Figure
4A). To control for the purity of the
different fractions, the same nitrocellulose membrane was reincubated
with antibodies directed against Sec61p and Dpm1p, both of which are ER
integral membrane proteins (Beck et al., 1990
; Wilkinson
et al., 1996
), and with antibodies directed against the
cytosolic hexokinase (van Tuinen and Riezman, 1987
). Sec61p and Dpm1p
cofractionated with Mps2p in the P13 fraction; hexokinase did not
cofractionate.
|
To determine the nature of the association of 9xmycN-Mps2p with the
nuclear/ER membrane fraction, the 13,000 × g pellet
was extracted with various buffers and evaluated for the quantity of
solubilized 9xmycN-Mps2p by immunoblotting. Agents that
release peripheral membrane proteins (associated with membranes through electrostatic or hydrophobic interactions with integral membrane proteins) and soluble intranuclear proteins, such as 1 M NaCl or 6 M
urea, did not solubilize 9xmycN-Mps2p from the P13 (Figure 4B).
9xmycN-Mps2p was partially solubilized by a detergent treatment (1%
Triton X-100) or by an alkali treatment (0.2 M
Na2CO3, pH 11). As an internal control for
integral membrane protein behavior, we used Sec61p, which was
completely solubilized by 1% Triton X-100 but was not solubilized by
the sodium carbonate (Figure 4B). Overall, the fractionation
characteristics of 9xmycN-Mps2p suggest that it is an integral membrane
protein. The unusual partial extraction by alkaline sodium carbonate
may be due to the rather small hydrophobic stretch of 17 amino acids
containing Tyr326 in the Mps2p sequence. A negative charge
would in principle be introduced on this residue at pH 11, and this
ionization might be important for stripping Mps2p from the membrane.
Similar extraction behavior was seen for Sss1p, an integral ER membrane
protein containing a 16 amino acid hydrophobic stretch including a
tyrosine residue (Esnault et al., 1994
).
9xmycN-Mps2p was partially solubilized by 1% Triton X-100, whereas Sec61p, which spans the ER membrane multiple times, was completely extracted using the same conditions (Figure 4B). Partial extraction might indicate that the protein is trapped within multilayered membrane-detergent aggregates, which are destroyed by sonication; however, partial solubilization of 9xmycN-Mps2p from the P13 fraction was still observed after sonication in the presence of 1% Triton X-100 (our unpublished results). One possibility to explain this behavior is that 9xmycN-Mps2p could be physically associated with other proteins that prevent its full solubilization from membranes in the presence of detergent. To test this possibility, 9xmycN-Mps2p in the P13 was extracted with 1% Triton X-100 containing 6 M urea (to weaken hydrophobic interactions) or Triton X-100 containing 1 M NaCl (to neutralize electrostatic bonds). As shown in Figure 4C, 9xmycN-Mps2p was completely solubilized with both double treatments, suggesting that hydrophobic and electrostatic interactions could be preventing total solubilization of 9xmycN-Mps2p by detergent treatment alone.
Mps2p Is Localized at the SPB and the NE/ER
We localized tagged Mps2p in whole cells to confirm and
potentially extend the 9xmycN-Mps2p fractionation data. To visualize Mps2p in living cells, Mps2p was tagged at the amino terminus with the
green fluorescent protein (GFP). As shown in Figure
5, one or two spots of strong
autofluorescence were visible that were coincident with the nuclear DNA
(Figure 5, a-c). Additionally, we often observed a weaker, perinuclear
GFP-Mps2p signal (Figure 5, b and c, arrows). The number, intensity,
and location of the brighter spots of fluorescence suggested that they
correspond to SPBs. We confirmed this localization by two methods.
First, we used whole-cell indirect immunofluorescence deconvolution
microscopy to determine whether Mps2p colocalized with a known SPB
component, Spc42p (Donaldson and Kilmartin, 1996
). We used a strain
that contains both Mps2p epitope tagged at the C terminus with 9xmyc (9xmycC-Mps2p; see MATERIALS AND METHODS) and Spc42p-GFP (Chial et al., 1998
; Schutz and Winey, 1998
). Similar to the
GFP-Mps2p, 9xmycC-Mps2p localized in one or two brighter spots around
the nucleus and also at the nuclear periphery (Figure
6A, 9xmycC-Mps2p). In these cells, the
brighter spots of 9xmycC-Mps2p localization (red) and the Spc42-GFP
(green) signals were coincident (Figure 6A, combined; overlap is
yellow). It should be noted that the genetic behavior of
9xmycC-MPS2 is somewhat different from that of wild-type
MPS2. Cells expressing 9xmycC-Mps2p can increase in ploidy
spontaneously (haploid to diploid, an mps2-1 phenotype) but
are not temperature sensitive (our unpublished results), suggesting a
very mild defect in Mps2p function. Nonetheless, the localization pattern is similar to that of GFP-Mps2p, for which cells stably remain
haploid. Furthermore, we observe Mps2p at the SPB during various stages
of the cell cycle, suggesting that Mps2p is present at the SPB
throughout the cell cycle.
|
|
We also explored whether the perinuclear localization of 9xmycC-Mps2p
corresponded to NPCs. For this experiment, we used a strain expressing
both 9xmycC-Mps2p and Nup49p-GFP. Nup49p is a well characterized NPC
protein, or nucleoporin, that exhibits a characteristic punctate,
nuclear rim localization pattern by whole-cell immunofluorescence
microscopy (Grandi et al., 1995
; Bucci and Wente, 1997
). We
observed very little overlap between 9xmycC-Mps2p and Nup49-GFP in any
of the cells that we examined. An example of this is shown in Figure
6B. There are discrete areas of colocalization between the two proteins
(yellow), but their localization patterns are quite distinct,
suggesting that Mps2p is not a nucleoporin. In addition, there are
bright spots of 9xmycC-Mps2p at the nuclear periphery that are devoid
of Nup49p signal, indicative of where the SPB is located. The signal of
9xmycC-Mps2p and GFP-Mps2p at the nuclear periphery is weaker than at
the SPB. On the basis of this observation and the fractionation of
9xmycN-Mps2p with membranes, we propose that Mps2p is a minor membrane
component of the NE.
The second method that was used to confirm the SPB localization was
immunoelectron microscopy of cells expressing GFP-Mps2p. As shown in
Figure 7, the SPBs from four different
cells were decorated with one (b) to five (c) gold particles, with
little to no background (of 12 SPBs examined, all were decorated with
1 gold particle). We did not observe a significant number of gold
particles in the NE; however, this could be due to lower levels of
Mps2p in the NE than at the SPB (see DISCUSSION). We conclude from
these experiments that Mps2p tagged with either GFP or 9xmyc is a
component of the SPB and the NE.
|
| |
DISCUSSION |
|---|
|
|
|---|
We report here that the MPS2 gene encodes a novel
44-kDa integral membrane protein localized at SPBs and the NE.
MPS2 has been previously reported to be required for SPB
duplication (Winey et al., 1991
). Here, we provide evidence
that MPS2 is linked to the ubiquitin-proteasome pathway.
Although we consider the MPS2 gene to be essential, some of
the spore clones containing a null allele were able to give rise to a
colony containing very slow growing cells with abnormal ploidy. The
fact that defects in SPB duplication can lead to increases in ploidy
via a monopolar mitosis is well documented (Winey et al.,
1991
). This event has also been observed at the permissive temperature
for strains containing conditional alleles of CDC31 and
KAR1 (Schild et al., 1981
; Rose and Fink, 1987
).
It seems possible that the surviving mps2 null strains are
not perfect tetraploids, but are aneuploid in a manner that increases
or decreases the dosage of some gene(s), which allows for the
nulls to survive.
The fact that MPS2 was identified in a screen for possible
regulatory or substrate proteins in the proteasome pathway is
intriguing. On the basis of the genetic interaction between
CIM5 and MPS2, we sought to determine whether
Mps2p was a potential substrate for the ubiquitin-proteasome pathway
by examining protein levels throughout the cell cycle; however, with
Mps2p tagged at its amino terminus with nine copies of the myc epitope
and expressed from its normal promoter (Figure 3), we were unable to
see any major fluctuations in Mps2p levels during the cell cycle, nor
were we able to see any proteolysis of the protein in cells arrested in the G1 phase of the cell cycle with
-factor, a situation in which destruction box proteins are rapidly degraded.
At the present time, the mechanism of how cim5-1 cells die
in the presence of overexpressed Mps2p remains unknown. Interestingly, it was reported recently that GFP-Cim5p-labeled proteasomes are enriched in the NE/ER in living yeast cells, indicating that
proteasomal degradation is concentrated at this compartment in yeast
(Enenkel et al., 1998
). Because Mps2p is also localized at
the NE, it is possible that Mps2p may interact with the proteasome,
although it does not appear that Mps2p is a proteasome substrate. If
so, overexpression of Mps2p may inhibit the normal function or
localization of the proteasome such that the overexpression becomes
toxic in cim5-1 cells containing a poorly functioning
proteasome. In addition to the interaction between MPS2 and
CIM5, the only other known gene that links SPB duplication
to the ubiquitin-proteasome pathway is PCS1 (McDonald and
Byers, 1997
). Like CIM5, PCS1 encodes a proteasome 19S cap subunit (Russell et al., 1996
).
PCS1 function in SPB duplication appears to be required
before MPS2 function, in that SPB duplication is blocked at
an earlier stage in pcs1 mutants cells than in
mps2-1 cells (Winey et al., 1991
; McDonald and
Byers, 1997
). Taken together, these observations strengthen the idea
that SPB duplication may be regulated by the ubiquitin-proteasome pathway.
It is clear that Mps2p has a primary role in insertion of the nascent
SPB into the NE. First, mps2-1 cells exhibit a monopolar spindle because of a defective SPB. The nascent, defective SPB is not
properly inserted into the NE and lies on the cytoplasmic side of the
envelope. Moreover, the SPB appears to lack the inner (nuclear) plaque
and its associated nuclear microtubules, which are observed in
functional SPBs. Second, tagged Mps2p localizes to the SPB as
demonstrated by fluorescence microscopy and immunoelectron microscopy.
Third, YGL075c/Mps2p was identified by mass spectrometry in highly
purified preparations of SPBs (Wigge et al., 1998
), although
these authors did not cytologically localize the YGL075c protein in
this study. Taken together, these data suggest that Mps2p is directly
involved in insertion of the nascent SPB into the NE, as originally
proposed (Winey and Byers, 1993
).
We have suggested previously that the NDC1 protein also
carries out this insertion event (Winey et al., 1993
). The
NDC1 gene function appears to be required at the same step
in SPB duplication based on the execution point and the same terminal
SPB morphology. Ndc1p is a membrane protein and is a shared component
of NPCs and SPBs (Chial et al., 1998
). The work presented
here extends the parallels between NDC1 and MPS2.
Both genes encode essential membrane proteins that localize to SPBs;
however, unlike Ndc1p, Mps2p does not appear to be a component of NPCs.
The caveat to this is that Mps2p is expressed at a much lower level
than Ndc1p (compare Figures 5-7 with Chial et al., 1998
).
This is most evident in the weak nuclear periphery signal (Figures 5
and 6) and a lack of gold particles found in the NE (Figure 7).
Although we cannot rule out the possibility that Mps2p could be
transiently associated with NPCs, Mps2p fails all criteria used to show
that Ndc1p is a component of NPCs.
On the basis of the SPB localization of Mps2p and Ndc1p, one possible
scenario could be that Mps2p and Ndc1p are required as membrane
components for inserting the nascent SPB into the NE. There is only one
other known SPB component with a putative transmembrane domain,
Spc105p, which appears to localize to the nucleoplasmic face of the SPB
and to the nuclear microtubules (Wigge et al., 1998
). It is
not known whether mutations in this protein cause an SPB duplication
defect. In the future, the ultrastructural details of assembling a new
SPB will be important for a more complete understanding of Mps2p and
Ndc1p function. In summary, MPS2 encodes an integral
membrane protein that localizes to SPBs and the NE. Future experiments
with MPS2 and the genes with which it interacts may reveal
the specific function of Mps2p and provide us with new insights into
the role of membrane proteins in SPB assembly.
| |
ACKNOWLEDGMENTS |
|---|
We are indebted to Marie-Claude Marsolier and Ivan Le Masson for their invaluable help with constructs. We thank Lipika Roy for sequencing the mps2-1 mutation. We are grateful to Tom Giddings, Jr. and Mary Morphew for the immunoelectron microscopy. We thank Michel Ghislain for the initial suggestion for the cim5 screen and for his interest and collaboration in the project. We are grateful to Orna Cohen-Fix and Doug Koshland, Kim Nasmyth, Pam Silver, Aaron Straight, Valerie Doye, and Heidi Chial for strains, plasmids, and discussions, and to Andrea Castillo and Heidi Chial for critical reading of this manuscript. M.C.M.-C. was supported by postdoctoral research fellowships from the European Union (Human Capital and Mobility Program) and the Ministerio Español de Educacíon. This work was also supported by a European Union BioMed 2 network on the proteasome. S.M. was supported by a National Institutes of Health (NIH) postdoctoral research fellowship (GM-18473); A.M. was supported by grants from the Howard Hughes Medical Institute, the Ford Foundation, and an NIH Training Grant. This work was also supported by the National Science Foundation (YIA MCB-9357033, M.W.) and the American Cancer Society (CB-197, M.W.). Deconvolution microscopy in The Department of Molecular, Cellular, and Developmental Biology was made possible, in part, by a gift from Virginia and Mel Clark.
| |
FOOTNOTES |
|---|
These authors contributed equally to this work.
Corresponding author. E-mail address:
Mark.Winey{at}Colorado.edu.
| |
ABBREVIATIONS |
|---|
Abbreviations used: APC, anaphase-promoting complex; GFP, green fluorescent protein; NE, nuclear envelope; NPC, nuclear pore complex; SPB, spindle pole body.
| |
REFERENCES |
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