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Vol. 11, Issue 11, 4033-4049, November 2000

Department of Molecular and Cell Biology, Division of Biochemistry and Molecular Biology, University of California, Berkeley, California 94720-3202
Submitted February 11, 2000; Revised August 25, 2000; Accepted September 7, 2000| |
ABSTRACT |
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Ste5 is essential for pheromone response and binds components
of a mitogen-activated protein kinase (MAPK) cascade: Ste11 (MEKK), Ste7 (MEK), and Fus3 (MAPK). Pheromone
stimulation releases G
(Ste4-Ste18), which recruits Ste5 and
Ste20 (p21-activated kinase) to the plasma membrane, activating
the MAPK cascade. A RING-H2 domain in Ste5 (residues 177-229)
negatively regulates Ste5 function and mediates its interaction with
G
. Ste5(C177A C180A), carrying a mutated RING-H2 domain, cannot
complement a ste5
mutation, yet supports mating even
in ste4
ste5
cells when
artificially dimerized by fusion to glutathione
S-transferase (GST). In contrast, wild-type Ste5 fused
to GST permits mating of ste5
cells, but does not
allow mating of ste4
ste5
cells. This differential behavior provided the basis of a genetic selection for STE5 gain-of-function mutations. MATa
ste4
ste5
cells expressing Ste5-GST
were mutagenized chemically and plasmids conferring the capacity to
mate were selected. Three independent single-substitution mutations
were isolated. These constitutive STE5 alleles induce cell cycle arrest, transcriptional activation, and morphological changes normally triggered by pheromone, even when G
is absent. The first, Ste5(C226Y), alters the seventh conserved position in the
RING-H2 motif, confirming that perturbation of this domain constitutively activates Ste5 function. The second, Ste5(P44L), lies
upstream of a basic segment, whereas the third, Ste5(S770K), is
situated within an acidic segment in a region that contacts Ste7. None
of the mutations increased the affinity of Ste5 for Ste11, Ste7, or
Fus3. However, the positions of these novel-activating mutations
suggested that, in normal Ste5, the N terminus may interact with the C
terminus. Indeed, in vitro, GST-Ste5(1-518) was able to associate
specifically with radiolabeled Ste5(520-917). Furthermore, both the
P44L and S770K mutations enhanced binding of full-length Ste5 to
GST-Ste5(1-518), whereas they did not affect Ste5 dimerization. Thus,
binding of G
to the RING-H2 domain may induce a conformational change that promotes association of the N- and C-terminal ends of Ste5,
stimulating activation of the MAPK cascade by optimizing orientation of
the bound kinases and/or by increasing their accessibility to
Ste20-dependent phosphorylation (or both). In accord with this model,
the novel Ste5 mutants copurified with Ste7 and Fus3 in their activated
state and their activation required Ste20.
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INTRODUCTION |
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The pheromone response pathway of the yeast
Saccharomyces cerevisiae has provided a system for
elucidating mechanisms that convert an extracellular signal
into both a morphological response and a change in the pattern
of gene expression (reviewed in Bardwell et al.,
1994
; Leberer et al., 1997a
). Mating of haploid
cells (MATa and MAT
) requires
the action of peptide pheromones: MATa
cells secrete a-factor, and MAT
cells
secrete
-factor. The cell surface receptors for these
peptides (Ste2 in MATa cells binds
-factor,
and Ste3 in MAT
cells binds a-factor)
are members of the superfamily of seven-transmembrane-segment receptors and are coupled to a heterotrimeric G protein.
Pheromone binding to its cognate receptor triggers dissociation
of the associated G
subunit (Gpa1) from the G
complex
(Ste4-Ste18). Released G
complexes initiate activation of a
signal transduction pathway that involves, among other components, an
evolutionarily conserved module consisting of three tiers of protein
kinases: a MEKK (Ste11), a MEK (Ste7), and two
mitogen-activated protein kinases (MAPKs) (Fus3 and Kss1) (reviewed in
Gustin et al., 1998
; Posas et al., 1998
).
Activation of this cascade leads to MAPK-dependent phosphorylation of
substrates required for pheromone response, including Ste12, a
transcription factor required for induction of pheromone-responsive genes (Song et al., 1991
; Elion et al., 1993
;
Hung et al., 1997
); Dig1 and Dig2, negative regulators of
Ste12 (Cook et al., 1996
; Tedford et al., 1997
);
and, Far1 (Peter et al., 1993
), a protein involved in
both inhibition of the G1-cyclin-bound forms of the cyclin-dependent
kinase Cdc28 (Tyers and Futcher, 1993
; Peter and Herskowitz, 1994
), and
in morphological changes that polarize the actin cytoskeleton toward
the side of the cell facing the highest pheromone concentration (Valtz
et al., 1995
; Butty et al., 1998
). As a result,
cells arrest in the G1 phase of the cell cycle,
form a protrusion ("shmoo tip") toward its mating partner, and
express the proper subset of gene products required for efficient conjugation (Erdman et al., 1998
; Madhani et al.,
1999
; Roberts et al., 2000
).
Although release of G
is sufficient to activate the pathway, it
is not completely understood how this event is linked to activation of
the MAPK cascade. Two additional proteins are required for pheromone
response. One is Ste20 (Leberer et al., 1992
; Ramer and
Davis, 1993
), a protein kinase homologous to the p21-activated kinases
(PAKs) (Manser and Lim, 1999
). The other is Ste5, a protein thought to
dictate the specificity and efficiency of signaling by serving as a
scaffold that physically associates with Ste11, Ste7, and the MAPKs
(Choi et al., 1994
; Marcus et al., 1994
; Printen and Sprague, 1994
), thereby also insulating from inappropriate activation certain of the components, such as Ste11 and Ste7, that are
shared by other signaling pathways (Yashar et al., 1995
; Posas and Saito, 1997
). A mechanism that links free G
directly to
activation of the MAPK cascade is suggested by recent findings that the
released G
complex can interact with both Ste5 (Whiteway et
al., 1995
; Inouye et al., 1997b
; Pryciak and Huntress,
1998
) and Ste20 (Leeuw et al., 1998
). The surfaces on G
that mediate these two interactions are different, but juxtaposed
(Leeuw et al., 1998
; Dowell et al., 1999
).
Because the G
complex released from pheromone receptors remains
anchored to the plasma membrane via both prenylation and palmitoylation
of the C terminus of G
(Hirschman and Jenness, 1999
; Manahan
et al., 2000
), G
association with both Ste5 and Ste20
recruits these proteins to the plasma membrane (Pryciak and Huntress,
1998
; Mahanty et al., 1999
; Dhillon et al., 2000
)
where their proximity facilitates functional interaction and leads to
activation of the MAPK cascade tethered to Ste5. This model is
supported by the fact that mutations in either Ste5 (Inouye et
al., 1997b
; Feng et al., 1998
) or Ste20 (Leeuw et
al., 1998
) that alter only their ability to bind to Ste4 (G
)
cause sterility in vivo.
Although it has been reported that Ste20-mediated phosphorylation of
Ste11 (MEKK) does not enhance the in vitro catalytic activity of Ste11
(Wu et al., 1995
) and that Ste11 (as a glutathione S-transferase [GST] fusion) displays the same level of
activity (with Ste7 as substrate) when isolated from either naive or
pheromone-treated cells (Neiman and Herskowitz, 1994
), it now seems
clear that phosphorylation of specific residues in the N terminus of
Ste11 by Ste20 is required for activation of the MAPK cascade (Drogen
et al., 2000
). However, there is evidence that Ste5 also
plays an active role in MAPK activation and does not merely serve as a
passive scaffold. We identified a point mutation in Ste5 that could
stimulate signaling, even in the absence of receptor activation (Hasson
et al., 1994
). This mutation, Ste5(T52M), lies near the N
terminus just upstream of a stretch of basic residues in a region not
known to associate with any interacting protein (Elion, 1995
; Inouye
et al., 1997a
) (Figure 1A).
Another mutant, Ste5(C177A C180A), in which two consensus Zn2+-binding residues in the RING-H2 domain of
Ste5 have been eliminated, is unable to interact with Ste4 and is
unable to support mating of ste5
cells; however, if
artificially dimerized via fusion to GST (Maru et al.,
1996
), the Ste5(C177A C180A)-GST chimera is not only functional but
also overcomes the need for G
because it can support mating even
in ste4
ste5
cells (Inouye et
al., 1997b
). This constitutive activation of the pheromone
response pathway suggests that, normally, free G
released from
pheromone-occupied receptors associates with Ste5 and causes some
conformational change that facilitates activation of the MAPK cascade.
Both biochemical (Yablonski et al., 1996
; Feng et
al., 1998
) and genetic (Inouye et al., 1997a
,b
) methods
indicate that Ste5 exists as an oligomer. Deletion analysis located
regions important for this Ste5-Ste5 self-association to two segments:
residues 138-239 (which overlap with the RING-H2 domain) and/or
335-586 (Yablonski et al., 1996
). Although multimerization
of Ste5 may be necessary for signaling, it is not sufficient because,
unlike Ste5(C117A C180A)-GST, wild-type Ste5-GST does not complement
ste4
ste5
cells (Inouye et al., 1997b
). Thus, alteration of the RING-H2 (either by mutation or via
interaction with G
) must alleviate some negative constraint in
Ste5 that promotes signaling via a mechanism different from (or in
addition to) oligomerization.
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To gain more insight into the role that Ste5 plays in activation of the
MAPK cascade, we sought to identify additional gain-of-function alleles
in Ste5. In this study, we used a new positive selection to obtain
novel constitutively active derivatives of Ste5. We selected for
mutations that, like alteration of the RING-H2 motif, permit Ste5-GST
to function in the absence of G
. Here we present a detailed
phenotypic and biochemical characterization of these novel alleles. The
nature of these mutations confirmed, first, that the RING-H2 domain in
Ste5 exerts some negative constraint on the overall structure of Ste5
that, when alleviated, permits signal propagation. Second, the
positions of these mutations suggested that the N terminus and the C
terminus of Ste5 can associate, and we present direct physical evidence
for this interaction.
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MATERIALS AND METHODS |
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Strains and Growth Conditions
Strains used in this study are listed in Table
1. Strain BYB88 (ste4
ste5
) has been described previously (Inouye et
al., 1997b
). To generate strain YCS1 (ste4
ste5
ste20
), one-step gene transplacement
(Rothstein, 1983
) was accomplished by DNA-mediated transformation of
strain BYB88 with a ste20
::LEU2 cassette that is described in detail elsewhere (Ramer and Davis, 1993
). To generate strain YCS3 (ste4
ste5
ste12
), plasmid pLB1367 (gift from Dr. Gustav Ammerer,
University of Vienna, Austria), containing a 1133-bp internal deletion
of STE12 replaced by the LEU2 gene, was digested with BamHI, and the resulting gel-purified DNA fragment was
used for transformation of strain BYB88. Disruption of chromosomal loci
was confirmed by polymerase chain reaction (PCR) amplification of DNA
isolated from transformants and parental cells by using appropriate
primers.
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Isolation of STE5 Gain-of-Function Alleles by Chemical Mutagenesis
Yeast strain BYB91 (MATa
ste4
ste5
) (Table 1) was transformed with
pCJ148, a URA3-marked CEN plasmid expressing a
(His)6- and c-Myc epitope-tagged derivative of
STE5-GST under control of the GAL1 promoter. A
culture (10 ml) of this transformant was grown in a synthetic
complement medium containing 2% glucose and supplemented with all of
the amino acids, but lacking uracil (SCGlc-Ura) (Sherman et
al., 1986
) to an A600 nm = 0.5 (~5 × 106 cells/ml), washed twice with 50 mM
K-PO4 (pH 7.4), and resuspended in 30 ml of the
same buffer. Samples (7.5 ml) of the suspension were distributed to
four tubes, two of which received 150 µl of ethylmethane sulfonate
(EMS), whereas the other two served as controls. After incubation for
1 h at 30°C with gentle vortex mixing every 10 min, 7.5 ml of
10% Na-thiosulfate was added to each tube to quench the mutagen and
cells were collected by centrifugation at 1000 × g for
5 min. The resulting pellets were washed twice with 50 mM
K-PO4 (pH 7.4), and resuspended in 1 ml of the
same buffer. Samples (100-150 µl) of appropriate dilutions
(10
4 for EMS-treated cells and
10
6 for the untreated controls) of the final
cell suspensions were each plated on fifteen 150-mm-diameter agar
plates containing SCGlc-Ura medium and incubated at 30°C for 3 d. As determined by comparing the number of viable colonies yielded by
the EMS-treated samples to those on the control plates, the mutagenesis
resulting in 70-75% killing. Each of the 30 plates resulting from the
EMS treatment was replica-plated on a rich medium containing 2%
galactose (YPGal) (Sherman et al., 1986
), which had been
seeded previously with a suspension of a tester strain of opposite
mating type (DC17), and incubated overnight at 30°C. The mating
plates were then replica-plated to an appropriate minimal medium (SGlc)
to select the resulting diploids. Plasmid DNA was rescued from the 44 initial candidates obtained and retested for galactose-dependent
induction of mating competence by the same procedure in a different
ste4
ste5
strain (BYB88). Three plasmids
(pSL1, pSL2, and pSL3) reproducibly conferred mating ability in both
BYB91 and BYB88 in a plasmid- and galactose-dependent manner and were
chosen for further study.
Mating Assay
Mating proficiency was assessed by replica-plating patches of
the MATa cells to be tested onto a lawn of the
MAT
tester strain (DC17) on YPGal plates (Sprague, 1991
).
After incubation overnight at 30°C, the mating plates were
replica-plated onto plates containing synthetic minimal medium
selective for diploids and incubated at 30°C for 2 to 3 d.
Measurement of Growth Rate and Examination of Morphology
Strains harboring plasmids expressing wild-type or mutant Ste5
(or the corresponding Ste5-GST and/or Ste5-GFP derivatives) from the
GAL1 promoter were grown at 30°C in SC medium containing 2% raffinose (SCRaf) to an A600 nm = 0.2. Expression was induced by addition of galactose to the medium to a
final concentration of 2%, and the cultures were incubated at the same
temperature for additional 8 h. At 2-h intervals, samples were
withdrawn and cell number was counted in a hemocytometer chamber under
the phase-contrast microscope. Likewise, samples under coverslips on
standard microscope slides were also examined under the phase-contrast
microscope or the fluorescence microscope (see below) to monitor the
morphology of the cells. To examine the pattern of chitin deposition,
cells were washed once in phosphate-buffered saline (PBS), fixed in 5%
formaldehyde for 30 min at room temperature, and stained with 0.1 mg/ml
Calcofluor White (Sigma, St. Louis, MO) for 30 min at room temperature
(Pringle et al., 1991
). Cells were examined under a Zeiss
epifluorescence microscope by using the 100× objective. Images were
collected by using a Sony charged-coupled device camera and
digitally recorded using imaging software (Phase3; Northern Exposure,
Inc., Milford, MA) and Photoshop (Adobe Systems, Inc., Mountain View, CA).
Plasmid Constructions and Recombinant DNA Methods
Escherichia coli strain DH5
(Hanahan, 1983
) was
used for routine manipulation and propagation of plasmids. Standard
molecular biology techniques were used for plasmid construction
(Sambrook et al., 1989
). Unless otherwise indicated, all PCR
reactions used native Pfu DNA polymerase (Stratagene, La
Jolla, CA). Plasmid pCJ174 was constructed by inserting the
ste5(C177A C180A) allele (Inouye et al., 1997b
)
into the BamHI site in a derivative of the
CEN-based, LEU2-marked, GAL1-promoter
containing vector YCpLG, which has been described previously (Bardwell
et al., 1998
), in which the EcoRI site in the
polylinker was removed by digestion with EcoRI, filling in
with Klenow fragment of E. coli DNA polymerase I, and
religation. The fragment inserted contained a BamHI site just upstream of the STE5 ATG initiator codon, introduced by
PCR as described in detail elsewhere (Inouye et al., 1997a
),
and a native BamHI site that lies 265 bp downstream of the
TAG stop codon of the STE5 open reading frame. Plasmids pCJ6
and pCJ148 have been described previously (Inouye et al.,
1997a
,b
). Plasmids pSL1, pSL2, and pSL3 are all derived from pCJ148 by
EMS treatment as described above and the STE5 coding
sequence in each of them was determined by standard dideoxynucleotide
chain-termination methods (Biggin et al., 1983
). Plasmids
pCS22, pCS7, and pCS8, carrying STE5(C226Y),
STE5(P44L), and STE5(S770K), respectively, under
control of the GAL1 promoter on a 2-µm DNA plasmid, were constructed by replacing the KpnI-XhoI fragment
containing the STE5 coding region in pCJ6 with the
corresponding fragments from pSL1, pSL2, and pSL3, respectively.
YEpL-FUS1Z (gift from J. Shimoni, this laboratory) is a
LEU2-marked, 2-µm DNA-containing plasmid carrying a fusion
of the FUS1 promoter to the E. coli lacZ gene, and was constructed by excising the URA3 gene from plasmid,
YEpU-Fus1Z (Bardwell et al., 1998
), by digestion with
Sse8387I and SmaI and substituting the
LEU2 gene, which was obtained by cleavage of plasmid pJJ282
(Jones and Prakash, 1990
) with PstI and SmaI.
Plasmid pCJ80, which expresses from the GAL1 promoter an
in-frame fusion of a brightness-enhancing variant of green fluorescent
protein (GFP) to the C terminus of Ste5, is described in detail
elsewhere (Dhillon et al., 2000
). Plasmids pCS49, pCS18, and
pCS50 encoding Ste5(C226Y)-GFP, Ste5(P44L)-GFP, and Ste5(S770K)-GFP,
respectively, were obtained by replacing the
KpnI-XhoI fragment of the STE5 sequence in pCJ80 with the corresponding fragments from plasmids pSL1,
pSL2, and pSL3. Overexpression of STE7 from plasmid
YCpLG-STE7 under control of the GAL1 promoter has been
described before (Inouye et al., 1997a
). To prepare pCS11
and pCS26, the region of STE5 corresponding to codons 1-518
was amplified by using Pfu DNA polymerase, a 5'-primer
containing a BamHI site, a 3'-primer containing a XhoI site, and pCJ148 DNA as template for wild-type
STE5 or pSL2 DNA as template for the STE5(P44L)
mutant. The resulting PCR products were cloned into pGEX5X-2
(Pharmacia, Piscataway, NJ) generating in-frame fusions to GST.
To prepare pCS19 and pCS27, the region of STE5 corresponding
to codons 520-917 was amplified in the same manner by using a 5'
primer containing an EcoRI site, a 3' primer containing a
SacI site, and pCJ148 DNA as template for wild-type STE5 or pSL3 DNA as template for the STE5(S770K)
mutant. The resulting fragments were cloned into the vector GEM4Z
(Promega, Madison, WI) for in vitro transcription-translation, as
described below.
Subcellular Localization of Wild-type and Mutant Ste5 Proteins by Using GFP
Strains BYB84 (ste5
) or BYB88 (ste4
ste5
) were transformed with plasmids encoding fusions of
GFP to the C terminus of either wild-type Ste5 (pCJ80), Ste5(C226Y)
(pCS49), Ste5(P44L) (pCS18), or Ste5(S770K) (pCS50), in the presence or
absence of a second plasmid expressing the same wild-type or mutant
derivative of Ste5-GST (pCJ148, pSL1, pSL2, and pSL3, respectively).
The transformants were grown in SCRaf medium to an A600
nm = 0.6, and then expression of the GFP fusions (and GST
fusions) was induced by addition of galactose (2% final concentration)
to the cultures. After 2 h, ste5
cells were washed
in SCGlc to repress further expression of the chimeras. Cultures
of the ste4
ste5
cells were induced for
4-6 h with galactose to induce morphological changes, and examined
thereafter under a fluorescence microscope equipped with an appropriate
cut-off filter. Cultures of the ste5
cells were divided
into two equal portions, one of which was treated for 30-60 min with
12 µM
-factor, as previously described (Dhillon et al.,
2000
), and the other was left untreated, as a control. Immediately
thereafter, the cells were examined under the fluorescence microscope.
Images were collected as described above.
Immunoprecipitation and Immunoblotting
Strain expressing from plasmids either wild-type or mutant
STE5 (or STE5-GST) under control of the
GAL1 promoter were pregrown at 30°C in SCRaf to an
A600 nm = 0.6 under conditions selective for
maintenance of the plasmids. Expression was induced by addition of
galactose (2% final concentration) and incubation for 3 h. Cells
were harvested, washed once with PBS, and lysed by vigorous vortex
mixing with chilled glass beads in ice-cold lysis buffer (20 mM
Tris-HCl, pH 7.2, 12.5 mM K-acetate, 4 mM MgCl2,
0.5 mM EDTA, 5 mM sodium bisulphite, 0.1% Tween 20, 12.5% glycerol)
containing 1 mM dithiothreitol, 10 mM Na-
-glycerophophate, 0.5 mM
NaVO4, 2 µg/ml leupeptin, 2 µg/ml pepstatin
A, 1 mM benzamidine, 2 µg/ml aprotinin, and 1 mM freshly prepared
phenylmethylsulfonyl fluoride. The resulting crude extracts were
clarified by centrifugation at 30,000 × g in a
microcentrifuge for 10 min at 4°C. Based on determination of the
protein concentration in these supernatant fractions by using a
commercial kit (Bio-Rad, Hercules, CA), a volume of each soluble
fraction containing 1 mg of protein total was preadsorbed for 30-60
min with 40 µl of a 50:50 slurry of Protein A/G-agarose beads
(Calbiochem, La Jolla, CA) and then the beads were removed by brief
centrifugation in a microfuge. To the resulting supernatant fraction
was added 1 µl of mouse ascites fluid containing an anti-c-Myc
monoclonal antibody, 9E10 (Evan et al., 1985
), and another
aliquot of Protein A/G-agarose beads. For the experiments in which Ste5
multimerization was assessed, a sample (1 µg) of a commercial
polyclonal anti-GST antibody (Santa Cruz Biotechnology, Santa Cruz, CA)
was used to capture Ste5-GST chimeras. The resulting mixtures were
incubated with rotatory agitation for 2 h at 4°C, and then the
bead-bound immune complexes were collected by brief centrifugation,
washed three times (500 µl each) with ice-cold lysis buffer
containing 0.1 mg/ml bovine serum albumin, and then twice with ice-cold
50 mM Tris-HCl, pH 7.4, containing the same protease and phosphatase
inhibitors indicated above. The immune complexes were solubilized by
resuspending the beads in SDS-PAGE sample buffer and boiling for 5 min.
Eluted proteins were resolved by SDS-PAGE, transferred
electrophoretically to an Immobilon-P membrane filter (Millipore,
Bedford, MA) by using a semidry transfer cell (Bio-Rad), and analyzed
by immunoblotting. Filters were incubated with the
appropriate primary antibodies for 90 min at room temperature, followed
by incubation with the appropriate horseradish peroxidase-conjugated
secondary antibodies for 60 min at room temperature, and then
visualized by using a commercial chemiluminescence detection system
(Santa Cruz Biotechnology). The anti-Ste7 and anti-Ste11 antibodies
(Cairns et al., 1992
), and the anti-Fus3 antibodies (Brill
et al., 1994
), are described in the references cited.
Polyclonal anti-GFP antibodies were obtained from Boehringer-Mannheim
(Indianapolis, IN).
Immune-Complex Kinase Assay of Fus3 Activity
Myc-tagged wild-type or mutant Ste5 constructs were
immunoprecipitated as described immediately above. The bead-bound Ste5 and associated proteins were washed three times (500 µl each) with
ice-cold lysis buffer containing 0.1 mg/ml bovine serum albumin and
then twice (500 µl each) in kinase buffer (50 mM Tris-HCl, pH 7.4, 20 mM MgCl2, 5 mM EGTA, 1 mM dithiothreitol, 10 mM
Na-
-glycerophosphate, 0.5 mM NaVO4). The
suspension of beads was split into two equal portions, and one was used
for immunoblot blot analysis, as described above, and the
other was used for enzyme assay, as follows. Fus3 activity was measured
as the amount of radioactivity incorporated into a specific substrate,
GST-Ste7(1-172) (Bardwell et al., 1996
). Kinase reactions
were initiated by resuspending the bead-bound immune complex in 30 µl
of kinase buffer containing 100 µM
[
-32P]ATP (3.3 mCi/µmol) and 1 mg of
purified GST-Ste7(1-172) and incubated at 30°C for 20 min with
occasional shaking of the tubes to disperse the beads. To terminate the
reaction, beads were removed by centrifugation and the supernatant
fraction was decanted into a fresh tube containing SDS-PAGE sample
buffer and boiled for 5 min. Proteins were resolved by SDS-PAGE on a
10% slab gel, which was dried and analyzed by autoradiography using
X-ray film. Densitometric analysis of bands in autoradiograms and
fluorograms was performed by using public-domain imaging software
available from the National Institutes of Health.
In Vitro Transcription-Translation and Analysis of Protein-Protein Interaction
Fus3 and Ste5(520-917) were produced by using a commercial SP6
RNA polymerase-dependent coupled transcription-translation kit (TNT;
Promega), according to the manufacturer's instructions. The resulting
35S-labeled proteins were incubated with rotatory
agitation for 1 h at 4°C with excess glutathione-agarose beads
that had been preadsorbed with either GST or GST-Ste5(1-518). The beads
were washed three times with PBS, and then eluted with 5 mM freshly prepared reduced glutathione in 50 mM Tris-HCl (pH 8.0). The resulting eluates were diluted into SDS sample buffer, boiled for 5 min, and
resolved by SDS-PAGE on a 12% slab gel, which was dried and analyzed
by autoradiography using X-ray film. For the kind of experiment shown
in Figure 9A, bacterially-expressed GST, GST-Ste5(1-518), or
GST-Ste5P44L(1-518) fusion proteins were adsorbed
to agarose-beads as above. Beads were then incubated with extracts of
strain BYB88 (MATa ste4
ste5
) expressing c-Myc-epitope-tagged versions of either full-length wild-type Ste5, Ste5(P44L), or Ste5(S770K) for 90 min at
4°C under constant agitation. Beads were washed and bead-bound proteins were eluted as described above. Eluted proteins were resolved
by SDS-PAGE and analyzed by staining with Coomassie blue (to examine
the loading of GST or GST fusion proteins) or by
immunoblotting with appropriate antisera.
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RESULTS |
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Isolation of Constitutively Active G
-independent Alleles of
STE5 by Random Chemical Mutagenesis
We have shown previously that expression of a Ste5(C177A
C180A)-GST chimera in ste4
ste5
cells
rescues mating ability, whereas a wild-type Ste5-GST chimera does not
(Inouye et al., 1997b
). We realized that this difference
could be exploited as the basis for an unbiased and more general
selection for additional gain-of-function alleles of STE5.
We searched after random mutagenesis of Ste5-GST with EMS for mutations
that, like alteration of the RING-H2 motif, permitted Ste5-GST to
function in the absence of G
. Three independently isolated
STE5 alleles were recovered (Figure 1A) that reproducibly conferred proficient mating in the absence of G
(Figure 1B). Nucleotide sequence analysis revealed that each allele contained a
different single-residue substitution.
The mutation (C226Y) in the first allele changes the seventh conserved
Zn2+-binding residue of the RING-H2 motif.
Because the RING-H2 domain mutations we studied previously were
generated by site-directed mutagenesis of the first and/or second
Zn2+-binding residue (Inouye et al.,
1997b
), isolation of C226Y provided independent confirmation that
perturbation of the RING-H2 domain activates Ste5 function (at least in
the context of its fusion to GST). The mutation (P44L) in the second
allele was also particularly interesting because it is situated just
proximal to a strikingly basic segment
(P44x2RxKKx3Kx2Rx2Rx3KKKR67)
near the N terminus of Ste5. Moreover, the P44L substitution lies just
upstream of the position of the point mutation (T52 M) that we isolated
previously by hydroxylamine mutagenesis, which partially activated Ste5
function (and did not require the context of a GST fusion) (Hasson
et al., 1994
). The mutation (S770K) in the third allele was
also striking because it lies just proximal to a very acidic segment
(S770x5DExDDDDEEDxDDx2DxExD785)
near the C terminus of Ste5. Moreover, S770K was identical to one of
the alterations (I568T S770K) in an allele that activated Ste5 function
in the absence of its fusion to GST, which was isolated in an
independent PCR-based mutagenesis and screen (our unpublished results).
To determine whether the constitutive phenotype conferred by these
three substitution mutations required their fusion to GST, each of
these alleles was transferred into a 2-µm DNA plasmid expressing
otherwise native STE5 from the GAL1 promoter and
tested for its ability to confer G
-independent mating (Figure
1C). Unlike wild-type STE5 expressed from the same vector,
all three mutants were able to rescue the mating ability of
ste4
ste5
cells (Figure 1C), although
somewhat less efficiently than the corresponding GST fusions, which
were expressed from the GAL1 promoter on a CEN
plasmid (Figure 1B). Thus, each mutation clearly contributes to the
constitutively active phenotype, even in the absence of fusion to GST.
In such qualitative patch mating assays, Ste5(C226Y) mated at a
frequency that was reproducibly higher than that displayed by
Ste5(C177A C180A) (our unpublished results). We have previously
determined, by using quantitative mating assays, that, under the same
conditions (expression from the GAL1 promoter on a 2-µm
DNA vector), Ste5(C177A C180A) mates with an efficiency of ~2 × 10
4 compared with <10
6
for ste5
cells (Inouye et al., 1997b
). On this
basis, we estimate that cells expressing Ste5(C226Y) mate at a
frequency that may approach 1% of the efficiency of wild-type cells.
Phenotypic Characterization of the Activated STE5 Alleles
Stimulation of the pheromone-signaling pathway elicits a variety
of cellular responses. To assess the relative strength of the three
single-substitution alleles and to determine whether they displayed any
differential effects, various aspects of cellular response were
assayed. First, the ability of the three mutants to impose G1-specific
cell cycle arrest was examined by inducing expression of the mutants
(as GST fusions from a CEN vector under control of the
GAL1 promoter) in MATa ste4
ste5
cells pregrown on raffinose (or, in some
experiments, on glucose) by addition of galactose and following both
growth rate (Figure 2A) and cell
morphology (Figure 2B). When grown on glucose or raffinose, all
transformants (vector alone, Ste5-GST, and each of the three mutants)
grew at the same rate (our unpublished results). After addition of
galactose, cells carrying the vector alone or expressing wild-type
Ste5-GST continued to grow at a nearly identical rate and went through
two doublings in the 8-h time period. Likewise, the same cells
overexpressing native Ste5 (not as a GST fusion) continued to grow
normally, due to the absence of G
(our unpublished results). In
contrast, expression of Ste5(P44L)-GST and also Ste5(S770K)-GST caused
the ste4
ste5
cells to cease growth for
nearly the entire 8-h period. Expression of the Ste5(C266Y)-GST allele
caused a significant lag (4-5 h) before the cells were able to resume
growth, but was reproducibly less potent than Ste5(P44L)-GST or
Ste5(S770K)-GST in retarding cell cycle progression. This cell cycle
arrest was due to activation of the pheromone response pathway, and not
the result of overexpression of "toxic" proteins because none of
the three mutant Ste5-GST proteins had any detectable affect on the rate of growth of ste12
cells or fus3
kss1
cells after shift to galactose medium, even though
all three proteins were produced at levels indistinguishable from those
generated in ste4
ste5
cells (our
unpublished results). Furthermore, when examined 6 h after
galactose addition, cells expressing Ste5(P44L)-GST and Ste5(S770K)-GST
displayed a marked increase in volume and formed the pear-shaped
morphology with pronounced projections (shmoo tips) that is
characteristic of haploid cells treated with pheromone (Figures 2B and
4), whereas cells expressing Ste5(C226Y)-GST enlarged and formed
elongated buds, but did not acquire the typical shmoo morphology.
Likewise, as revealed by staining with Calcofluor (Figure 2B), chitin
deposition was dramatically delocalized in cells expressing
Ste5(P44L)-GST and Ste5(S770K)-GST, another hallmark of haploid cells
responding to pheromone (Schekman and Brawley, 1979
), whereas in cells
expressing Ste5(C226Y)-GST, the majority of the chitin was deposited at
the incipient division septum in the bud neck, as observed in normally
dividing cells (Cabib, 1987
).
|
As an independent and more quantitative measure of the ability of the
mutants to activate the pheromone response pathway, the
MATa ste4
ste5
cells
expressing vector alone, Ste5-GST, and each of the three mutants, were
cotransformed with a plasmid carrying a pheromone-responsive reporter
gene (FUS1-lacZ) (Trueheart et al., 1987
) and
expression of the proteins was induced by addition of galactose, as
before. Two hours after galactose addition, cells carrying vector alone
or expressing wild-type Ste5-GST showed only basal levels of
-galactosidase activity; in contrast, cells expressing each of the
three mutants showed a pronounced elevation in
-galactosidase
activity (Figure 3, left). By this
criterion, however, Ste5(P44L)-GST was much more potent (2000-fold
induction versus Ste5-GST or vector alone) than either Ste5(S770K)-GST
(130-fold induction) or Ste5(C226Y)-GST (100-fold induction). The
ability of these activated alleles to induce reporter gene expression was even more evident 6 h after addition of galactose (a time period that correlates well with the appearance of the shmoo-like, or
elongated bud, morphology of the corresponding cells) and maintained the same order of potency: P44L (5000-fold induction) > S770K (1300-fold induction) > C226Y (700-fold induction) (Figure 3, right). The level of
-galactosidase expression induced by Ste5(P44L) was ~80% of the level observed in ste5
cells
expressing normal STE5 in the same manner (under control of
a GAL promoter on a CEN plasmid) and treated with
-factor (15 µM) (our unpublished results).
|
Nucleocytoplasmic Distribution of Ste5 Is Unaffected by the Activating Mutations
It has been shown that Ste5 shuttles between the nucleus and the
cytosol, resides mainly in the nucleus in naive cells, but is exported
to the cytoplasm upon pheromone treatment, where it localizes to the
protruding shmoo tip via its direct association with G
(Pryciak
and Huntress, 1998
; Mahanty et al., 1999
; Dhillon et
al., 2000
). Constitutive export of Ste5 from the nucleus seems to
require the exportin Xpo1, whereas the enhanced pheromone-induced export seems to require the exportin Msn5/Ste21 (Mahanty et
al., 1999
; Dhillon et al., 2000
). To investigate
whether the constitutively active, G
-independent,
single-substitution STE5 alleles identified in this study
affect either the default or pheromone-induced localization of Ste5,
GFP was fused in-frame to the carboxy-terminus of wild-type Ste5 and
each of the three mutant proteins. As in the Ste5-GST fusions, the
Ste5(P44L)-GFP, Ste5(S770K)-GFP, and Ste5(C226Y)-GFP chimeras were able
to support readily detectable levels of mating in ste4
ste5
cells, unlike wild-type Ste5-GFP (our unpublished results). The localization of these Ste5-GFP chimeras was examined in
both ste5
cells (naive and treated with pheromone) and in ste4
ste5
cells.
As previously observed, in untreated cells, wild-type Ste5-GFP is
predominantly nuclear. As documented elsewhere in detail, the observed
localization of Ste5-GFP is not an artifact of its overproduction
(Dhillon et al., 2000
). Each of the mutant alleles displayed
a distribution essentially identical to that observed for wild-type
Ste5 (Figure 4, left). Upon pheromone
treatment and the release of free G
from the pheromone receptors,
wild-type Ste5 rapidly exits the nucleus, such that by 40 min after
stimulation, most of the Ste5 is localized to the shmoo tip; likewise,
the pheromone-induced translocation and plasma membrane tethering of
Ste5(P44L) and Ste5(S770K) seemed to be just as efficient as that of
wild-type Ste5 (Figure 4, middle). As observed previously (Pryciak and
Huntress, 1998
; Dhillon et al., 2000
) for other mutations that eliminate or perturb the RING-H2 domain of Ste5 and prevent Ste5-G
interaction (Inouye et al., 1997b
; Feng
et al., 1998
), Ste5(C226Y) could not be stably recruited to
the cell membrane after pheromone treatment, suggesting that the C226Y
mutation likewise compromises the ability of Ste5 to interact with
G
(Figure 4, middle).
|
In ste4
ste5
cells, where G
is absent
and the Ste5 mutants display a constitutive ability to signal, all
three proteins, like wild-type Ste5, were predominantly nuclear and
displayed no detectable hyper-accumulation in the cytosol or at the
shmoo tip (Figure 4, right). Thus, these findings indicate, first, that the activated phenotype of these mutants does not result from a change
in their subcellular distribution and, second, that stable deposition
of Ste5 at the shmoo tip is not essential for the signaling function of Ste5.
Biochemical Characterization of the Activated STE5 Alleles
To determine whether the activating mutations affect the apparent
affinity of Ste5 for any of the associated components of the MAPK
cascade, extracts were prepared from MATa
ste4
ste5
cells carrying vector alone or
expressing wild-type Ste5-GST or each of the three single-substitution
mutants, which were also tagged with a c-Myc epitope (see MATERIALS AND
METHODS), and subjected to immunoprecipitation with a monoclonal
antibody directed against this epitope. The amount of Ste11, Ste7, and
Fus3 proteins coprecipitated was then assessed by
immunoblotting with appropriate antibodies after
resolution of the immune complexes by SDS-PAGE.
Equivalent amounts of each of the Ste5 proteins were recovered by
immunoprecipitation, as judged by immunoblotting
(Figure 5). Wild-type Ste5-GST and each
of the three mutants coprecipitated similar amounts of endogenous Ste11
(Figure 5A). In some experiments, we noted that the activated alleles,
especially Ste5(P44L)-GST and Ste5(S770K)-GST, coprecipitated a doublet
of Ste11-related bands rather than a single species (our unpublished
results). These bands may represent phosphorylated forms of Ste11,
although this possibility was not tested directly.
|
Because Ste7 is the MAPK cascade component present in the most limiting
amounts, it must be overexpressed to be reproducibly detected by
immunoblot analysis (Bardwell et al., 1996
;
Errede and Ge, 1996
). Hence, Ste7 was cooverexpressed in the same cells from the GAL1 promoter on a CEN plasmid. As in
the case of Ste11, the amount of Ste7 bound to either wild-type
Ste5-GST or to the mutants was similar in the majority of experiments
(Figure 5B). However, Ste7 exists in both a rapidly migrating
hypophosphorylated form and a more slowly migrating hyperphosphorylated
form; it has been amply demonstrated that shift to the
hyperphosphorylated form is correlated with activation of the pheromone
response pathway (Cairns et al., 1992
; Zhou et
al., 1993
). We noted that wild-type Ste5-GST always coprecipitated
both forms, whereas both Ste5(P44L)-GST and Ste5(S770K)-GST
reproducibly coprecipitated almost exclusively the hyperphosphorylated
species, even though both species were present in equivalent amount in
the extracts (Figure 5B). In agreement with its less potent activity
deduced from phenotypic tests, Ste5(C226Y)-GST displayed an
intermediate situation, with both bands present, but with the
hyperphosphorylated Ste7 band reproducibly more abundant (Figure 5B).
Hyperphosphorylation of Ste7 requires the MAPKs Fus3 and Kss1 (Cairns
et al., 1992
; Zhou et al., 1993
; Bardwell
et al., 1996
). Hence, the appearance of the
hyperphosphorylated forms of Ste7 bound to the activated Ste5 mutants
provided one biochemical confirmation that the MAPKs have become
activated in these cells. Indeed, because FUS3 is a
pheromone-responsive gene, activation of this signaling pathway by the
mutant Ste5 alleles should lead to overexpression of Fus3, which was
observed to be the case as judged by immunoblotting of
the extracts (Figure 6A). In contrast to
Ste11 and Ste7, all three of the activated Ste5 mutants reproducibly
coprecipitated more endogenous Fus3 than Ste5-GST (Figure 6B). However,
the greater amount of Fus3 bound to the mutants could merely result
from the higher level of Fus3 available. Nonetheless, the Fus3 that
coprecipitated with these mutants was more catalytically active than
the Fus3 associated with wild-type Ste5-GST (6D), as judged by its
ability to phosphorylate a specific substrate, GST-Ste7(1-172) (Figure 6C), even when normalized to the amount of Fus3 coprecipitated (Figure
6E), providing further biochemical confirmation that the constitutively
active Ste5 alleles cause activation of the MAPKs. Moreover, both
stimulation of Fus3 expression and the level of Fus3 activity displayed
the same order of potency among the three alleles as was observed in
the phenotype assays: P44L > S770K > C226Y.
|
Ste5 Activation Enhances MAPK Specific Activity and Requires Ste20 Action
As another approach to confirm that the higher Fus3 activity
coprecipitating with the Ste5 mutants was due to a higher specific activity of the enzyme rather than merely reflecting the greater amount
of protein bound, the same experiments were performed in a
ste4
ste5
ste12
strain. In
this background, the lack of the Ste12 transcription factor prevents
induction of FUS3 and other pheromone-regulated genes, even
when the pathway becomes activated. Indeed, as expected, equal amounts
of Fus3 were present in extracts of cells expressing wild-type Ste5-GST
and the three mutants; and, under these conditions, similar amounts of
Fus3 now coimmunoprecipitated with the normal Ste5 and the three Ste5
mutants (Figure 7A). However, as judged
by the immune-complex kinase assay (Figure 7A), the Fus3 associated
with Ste5(P44L)-GST, and to a lesser extent with Ste5(S770K)-GST,
reproducibly displayed a higher level of activity than the Fus3
associated with wild-type Ste5-GST (Figure 7A), even when normalized to
the amount of Fus3 coprecipitated (Figure 7C), as observed before
(Figure 6E). Thus, the constitutively active G
-independent
mutations in Ste5 act, at least in part, by facilitating activation of
the MAPK cascade, even though the effect is seemingly modest
(
2-fold).
|
To determine whether the constitutive phenotype of the three
single-substitution alleles that bypass the need for G
still require the activity of Ste20, a ste4
ste5
ste20
triple mutant strain was generated and
CEN plasmids expressing the activated Ste5-GST mutants from
the GAL1 promoter (Figure 1B), as well as 2-µm plasmids
expressing the same alleles in the context of STE5 from the
GAL1 promoter (Figure 1C), were introduced by transformation and tested for their ability to support mating. None of the activated alleles was able to rescue mating in either context when Ste20 was
absent (Figure 1, B and C). Correspondingly, at the biochemical level,
the MAPK cascade was not activated by any of these mutants when Ste20
was absent, as indicated by the lack of induction of Fus3 expression
(Figure 7B) and the low basal activity of the Fus3 associated with the
immunoprecipitated Ste5-GST mutants (Figure 7B) (<10% of the
activated state, as judged by the exposure time required for
autoradiography to detect bands of intensities equivalent to those in
Figure 7A; our unpublished results). These results demonstrate that
Ste20 is required for the constitutively active phenotype of the
G
-independent Ste5 mutants and suggest further that, in the
normal physiological pathway, Ste20 contributes to Ste5-dependent
activation of the MAPK cascade at a stage that occurs after
G
-Ste5 interaction.
N-terminal and C-terminal Domains of Ste5 Can Physically Interact
What molecular feature of Ste5 is altered by the activating
mutations that leads to their ability to stimulate downstream events in
the absence of G
? The C226Y mutation presumably disrupts the
RING-H2 domain, a perturbation that we showed previously alleviates a
negative constraint in Ste5 and may mimic a G
-induced
conformational change (Inouye et al., 1997b
). However, we
were struck by the fact that the other two single-substitution,
gain-of-function alleles we identified lie at opposite ends of the
molecule and are situated very near regions of opposite charge. This
observation suggested that the N terminus and the C terminus of Ste5
might physically associate with each other, perhaps via electrostatic interactions. To test this possibility, the N-terminal half of Ste5
(residues 1-518) was expressed as a GST fusion protein in E. coli and purified by adsorption to glutathione-agarose beads. The
C-terminal half of Ste5 (residues 520-917) was prepared in radioactive
form by in vitro transcription-translation in a rabbit reticulocyte
lysate (Figure 8A, left). To ensure that
the purified GST-Ste5(1-518) was folded properly and was competent to
bind a protein known to interact with this segment of Ste5 (Figure 1A),
radioactive Fus3 was also prepared by in vitro
transcription-translation as a positive control (Figure 8A, left).
|
We found that purified GST-Ste5(1-518) was able to bind both radiolabeled Fus3, as expected, and also Ste5(520-917) (Figure 8A, right), indicating that the N and C termini of Ste5 are able to physically associate in the absence of any other yeast protein. GST alone, which was present in very large excess over the chimeras, as judged by immunoblotting with anti-GST antibodies (Figure 8B), did not bind detectable amounts of either Fus3 or Ste5(520-917), demonstrating that the binding displayed by Ste5(1-518) was specific. To determine whether the P44L and S770K mutations affect this interaction in vitro, GST-Ste5(1-518) containing the P44L mutation was prepared in E. coli and Ste5(520-917) containing the S770K mutation was prepared by in vitro translation. Interestingly, GST-Ste5P44L(1-518) bound both the wild-type C-terminal fragment Ste5(520-917) and the mutant C-terminal fragment Ste5S770K(520-917) with higher affinity than did the wild-type N terminus GST-Ste5(1-518) (Figure 8A, right). In contrast, both GST-Ste5(1-518) and GST-Ste5P44L(1-518) bound Fus3 indistinguishably. The best binding was observed between the mutant N-terminal fragment and the mutant C-terminal fragment (Figure 8A, right).
To investigate whether the N-terminal region of Ste5 was able to
interact with full-length Ste5 and not just the isolated C-terminal
fragment, we performed an independent pull-down experiment by using
beads coated with bacterially expressed GST,
GST-Ste5WT(1-518), or
GST-Ste5P44L(1-518) and extracts of yeast cells
expressing either myc-tagged wild-type Ste5, myc-tagged Ste5(P44L), or
myc-tagged Ste5(S770K). We found reproducibly that GST-Ste5(1-518) was
able to bind full-length Ste5, whereas GST did not (Figure
9A). Furthermore, we found reproducibly that both the P44L and S770K mutations markedly improved binding of
full-length Ste5 to the N terminus domain (Figure 9A), corroborating the results obtained with the isolated C-terminal region of Ste5 prepared by in vitro translation (Figure 8).
|
Because Ste5 has been reported to self-associate (Yablonski et
al., 1996
; Feng et al., 1998
), and this multimerization
is thought to be important for signaling (Yablonski et al.,
1996
; Inouye et al., 1997b
), we tested whether the mutations
identified in our selection affected Ste5 oligomerization.
Differentially tagged Ste5 molecules (Ste5-GST and Ste5-GFP
derivatives) were coexpressed in a ste4
ste5
strain from the GAL1 promoter on a
CEN plasmid, and the Ste5-GST derivatives were
immunoprecipitated by using a polyclonal anti-GST antibody. The
immunoprecipitates were resolved by SDS-PAGE and the amount of Ste5-GST
and coimmunoprecipitated Ste5-GFP were analyzed by
immunoblotting with either anti-GST (Figure 9B, top) or
anti-GFP (Figure 9B, bottom) antibodies, respectively. In general, for
normal Ste5 and each of the three mutants, the amount of Ste5-GFP
coprecipitated was in direct proportion to amount of Ste5-GST recovered
(Figure 9B). Thus, although Ste5 exists in yeast cell extracts in
multimeric form, none of the three activated alleles seemed to
strengthen or weaken the efficiency of Ste5-Ste5 interaction assessed
in this manner.
Taken together, our results suggest, first, that Ste5 multimerization
is constitutive and not involved in the mechanism of activation
triggered by the activated alleles. Second, our findings suggest that,
rather than promoting more efficient oligomerization per se, both P44L
and S770K facilitate signaling in the absence of G
by enhancing
association of the N and C termini of Ste5, either within one Ste5
monomer in a preformed oligomer (intramolecular) (Figure 10A) or
between two adjacent Ste5 monomers in a preformed oligomer
(intermolecular) (Figure 10B).
|
| |
DISCUSSION |
|---|
|
|
|---|
We have identified three mutational alterations in the Ste5
protein that allow it to activate the pheromone response pathway constitutively in the absence of G
-dependent s