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Vol. 11, Issue 8, 2591-2604, August 2000
-Like Isoform
Department of Biochemistry and Biophysics, Hormone Research Institute, University of California, San Francisco, CA 94143-0534
Submitted December 16, 1999; Revised April 24, 2000; Accepted May 18, 2000| |
ABSTRACT |
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The formation of small vesicles is mediated by cytoplasmic coats
the assembly of which is regulated by the activity of GTPases, kinases,
and phosphatases. A heterotetrameric AP-3 adaptor complex has been
implicated in the formation of synaptic vesicles from PC12 endosomes
(Faundez et al., 1998
). When the small GTPase ARF1 is
prevented from hydrolyzing GTP, we can reconstitute AP-3 recruitment to
synaptic vesicle membranes in an assembly reaction that requires temperatures above 15°C and the presence of ATP suggesting that an
enzymatic step is involved in the coat assembly. We have now found an
enzymatic reaction, the phosphorylation of the AP-3 adaptor complex,
that is linked with synaptic vesicle coating. Phosphorylation occurs in
the
3 subunit of the complex by a kinase similar to casein kinase
1
. The kinase copurifies with neuronal-specific AP-3. In vitro,
purified casein kinase I selectively phosphorylates the
3A and
3B
subunit at its hinge domain. Inhibiting the kinase hinders the
recruitment of AP-3 to synaptic vesicles. The same inhibitors that
prevent coat assembly in vitro also inhibit the formation of synaptic
vesicles in PC12 cells. The data suggest, therefore, that the mechanism
of AP-3-mediated vesiculation from neuroendocrine endosomes requires
the phosphorylation of the adaptor complex at a step during or after
AP-3 recruitment to membranes.
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INTRODUCTION |
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Membrane proteins are carried from donor membranes to acceptor
membranes by two steps, the vesiculation of a carrier vesicle from the
donor and the fusion of the carrier vesicle with the acceptor.
Vesiculation of the donor membrane can itself be divided into five
steps: recognition of cargo proteins; recruitment of coating molecules;
the imposition of curvature on the forming vesicle membrane; fission of
the carrier vesicle from the donor membrane; and, finally, the loss of
the vesicle coat (Springer et al., 1999
). To discover the
molecular events that take place at each step, several laboratories
have reconstituted either the entire process of vesiculation or
individual steps in vitro.
The first two steps of vesiculation, cargo recognition and coating, can
be regulated by phosphorylation. Membrane proteins are recognized as
cargo because they contain sorting domains. Adaptors interact with a
tyrosine or a dileucine motif (Schmid, 1997
; Kirchhausen et
al., 1997
; Bonifacino and Dell'Angelica, 1999
). The recognition
of cargo molecules can be regulated by the phosphorylation of sites
close to the sorting domains; for example, in the trafficking of furin
(Wan et al., 1998
; Teuchert et al., 1999
; Molloy
et al., 1999
), CD4 (Pitcher et al., 1999
), CTLA-4
(Shiratori et al., 1997
), MHC-II-Ii complex (Anderson and Roche, 1998
), and pIgAR (Casanova et al., 1990
; Okamoto
et al., 1994
; Luton et al., 1998
). The cargo
molecules are recruited into a newly forming carrier vesicle by
cytoplasmic coat molecules (Matsuoka et al., 1998
; Bremser
et al., 1999
). The recruitment of two of the known coats,
COPI and COPII, is regulated by small ARF-like GTPases and appears to
be a relatively simple process (Lowe and Kreis, 1998
; Springer et
al., 1999
). COPII coat recruitment also is regulated by
phosphorylation, since serines of the sec31p component of the COPII
coat need to be phosphorylated for full coating activity (Salama
et al., 1997
). Another form of coating involves the clathrin
triskelion. The function of clathrin heavy and light chains is
modulated by phosphorylation. Clathrin heavy chain recruitment is
regulated by a single tyrosine phosphorylation (Wilde et
al., 1999
), whereas light chains are regulated by multiple serine-phosphorylation events (Chu et al., 1999
).
Clathrin-mediated coating requires a heterotrimeric adaptor complex,
AP-1 for Golgi and AP-2 for plasma membrane vesiculation, that links
cargo to clathrin. In contrast to the results for COPII,
phosphorylation of serines in AP-1 and AP-2 inhibits their recruitment
to membranes (Wilde and Brodsky, 1996
).
Vesiculation from endosomes also can be reconstituted in vitro and has
been found to be relatively simple. When the donor membranes are early
endosomes from the neuroendocrine cell line PC12, small vesicles are
formed in vitro that have a size, density, and composition that is
similar to brain synaptic vesicles (Lichtenstein et al.,
1998
). The formation of PC12 synaptic vesicles, sometimes called
synaptic-like microvesicles, can be reconstituted in vitro by adding
two cytoplasmic factors, the small GTPase, ARF1, and a third form of
adaptor complex, AP-3, but no added clathrin (Faundez et
al., 1997
, 1998
; Shi et al., 1998
). The identification
of AP-3 as a coating factor was a result of our ability to mimic the
first two of the five steps of vesiculation from endosomes, cargo
recognition and coat recruitment, by using a novel "reverse
reaction," in which purified synaptic vesicles are coated with AP-3
by incubation in the presence of GTP-ARF (Faundez et al.,
1998
). The coating reaction replicated the budding process since it
also requires temperatures above 15°C and hydrolyzable ATP (Faundez
et al., 1998
). The experimental simplicity of the coating
reaction allowed us to investigate the ATP-dependent step.
We have now found an enzymatic reaction, the phosphorylation of the
AP-3 adaptor complex, that is associated with synaptic vesicle coating.
Phosphorylation is by a kinase similar to casein kinase I
that
copurifies with AP-3 and phosphorylates the
3 subunit at its hinge
domain. Inhibiting the phosphorylation inhibits the coating process,
suggesting that phosphorylation helps the recruitment of AP-3 complexes
or the stabilization of AP-3 coats. The phosphorylation appeared to
have physiological significance since inhibiting casein kinase inhibits
the recruitment of AP-3 to endosomes and also synaptic vesicle
production in PC12 cells.
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MATERIALS AND METHODS |
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Materials
[125I]Na and ECL reagents were obtained
from Amersham Corp (Arlington Heights, IL).
[35S]ATP
S and
[35S]GTP
S were obtained from NEN (Boston,
MA). All the nucleotides, creatine phosphate, creatine kinase, and
Sephadex G25 were purchased from Boehringer Mannheim (Indianapolis,
IN). Protein G-Sepharose 4 Fast Flow and glutathione-Sepharose 4B were
obtained from Pharmacia Biotech (Uppsala, Sweden). Brefeldin A was
purchased from Epicenter Technologies (Madison, WI). Lithium heparin,
staurosporine, DRB (5,6-Dichloro-1-
-D-ribofuranosylbenzimidazole), and the
catalytic tryptic fragment of brain protein kinase C were acquired from Calbiochem (San Diego, CA). Purified casein kinases I and II and the
catalytic subunit of the cAMP-dependent kinase were purchased from
Promega (Madison, WI). The casein kinase inhibitor CKI-7 was purchased
from Seikagaku America (Ijamsville, MD). All drugs were dissolved in
methanol. Cell culture media and reagents were obtained from the
University of California Cell Culture Facility (San Francisco, CA).
Geniticin (G418) and IPTG were obtained from Life Technologies
(Gaithersburg, MD). All the other reagent-grade chemicals were
purchased from Sigma (St. Louis, MO), Fisher Chemical (Fairlawn, NJ),
or Calbiochem.
Antibodies
Monoclonal antibodies against synaptophysin (SY38) were
purchased from Boehringer Mannheim. Polyclonal antibodies against three
subunits of AP-3,
-NAP647-796, which
recognize both
3A and
3B, µ3/p47, and
3 were generated as
described in Dell'Angelica et al. (1997b)
. Anti-ARF
antibodies used in this study were polyclonal antibodies raised in
rabbits immunized with myristoylated recombinant human mutant ARF1
Q71L. Isotype-specific antibodies against casein kinase I
(78 19)
and I
(N19) reactive against casein kinase I

were obtained
from Santa Cruz Biotechnology (Santa Cruz, CA). Affinity-purified
anti-casein kinase I
antibody (RA) was a generous gift of Dr. R.A.
Anderson (Department of Pharmacology, University of Wisconsin-Madison
Medical School) (Gross et al., 1995
).
Animals and Brain Cytosol Preparation
Female Sprague Dawley rats were from Bantin and Kingman
(Fremont, CA). C57BL/6J, mocha STOCK gr+/+
AP-3dmh, and pearl C57BL/6J-pe mice
were from the Jackson Laboratory (Bar Harbor, ME). Pale ear
mice (ep/ep) and pearl C57BL/6J-pe mice were a gift of Dr. R. Swank (Roswell Park Cancer Institute, Buffalo, NY). Either rat or mouse brain cytosol were prepared as
described (Clift-O'Grady et al., 1998
). When required, each milliliter of cytosol was dialyzed overnight at 4°C against
1000 ml of intracellular buffer (38 mM potassium aspartate, 38 mM potassium glutamate, 38 mM potassium gluconate, 20 mM potassium
MOPS, pH 7.2, 5 mM reduced glutathione, 5 mM sodium carbonate, and 2.5 mM magnesium sulfate) supplemented with an antiprotease mixture (Clift-O'Grady et al., 1998
).
Expression and Purification of Recombinant Proteins
Q71L human ARF1 cDNA, kindly provided by Dr. D. Shields (Albert
Einstein College of Medicine, Bronx, NY), was used to generate recombinant protein as described (Faundez et al., 1997
).
Plasmids encoding GST and GST-fusion proteins encompassing the trunk of
3A (residues 1-287 and 288-642), the hinge domain of
3A
(residues 643-809) and
3B (residues 647-796), the ear domain of
3A (residues 810-1094), or the hinge-COOH terminal region of
2
(residues 592-951) were gifts of Dr. E. Dell'Angelica (NIH)
(Dell'Angelica et al., 1997a
,b
), and they were purified,
concentrated in Centriprep 30 (Amicon, Beverly, MA), and extensively
dialyzed against intracellular buffer
Synaptic-like Microvesicles Coating Assay and Affinity Chromatography
PC12 synaptic-like microvesicles (SVs) were isolated from
the PC12/N49A cell line transfected with an epitope-tagged version of
the synaptic vesicle protein VAMP2, mutant N49A (Faundez et al., 1998
). Cell-free synaptic vesicle-coating assays were
performed in 250 µl total volume in intracellular buffer, using
PC12/N49A 125I-KT3-labeled vesicles as described
(Faundez et al., 1998
). Reconstituted mixtures in the
absence or presence of drugs were kept at 0°C for 15 min. Coating
reactions were started by warming to 37°C. Reactions were stopped at
0°C for 10 min and loaded on the top of continuous 10-45% (wt/vol)
sucrose gradients buffered in 20 mM MOPS-KOH, pH 7.4, and 0.5 mM
MgCl2. Sucrose gradients were centrifuged at
183,000 × g for 150 min in a SW55 rotor. Fractions (27-28) were collected from the bottom of the gradient and counted in
a gamma counter. Sucrose concentration at the peak was determined by refractometry.
Antibodies against the cytosolic tail of synaptophysin (SY38, 0.5 µg)
were bound to 25 µl of protein G Sepharose. SVs were bound to the
matrix for 3 h or overnight at 0°C, and the unbound vesicles
were washed away in intracellular buffer supplemented with 0.1%
ovalbumin. Reaction mixtures containing 3 mg/ml rat brain cytosol, in
the absence or presence of either drugs or different nucleotides, were
incubated for 15 min at 0°C followed by warming to 37°C for 40 min
with periodic resuspension of the beads. After arresting the reactions
at 0°C, the matrix was washed in intracellular buffer, and the
retained proteins were eluted with Laemmli sample buffer and resolved
in 8-18% gradient PAGE-SDS gels before
immunoblotting (Faundez et al., 1998
).
To thiophosphorylate coated synaptic vesicles, AP-3 recruitment
was triggered by adding [35S]-ATP
S (0.5 µCi/µmol) and incubating at 37°C for 40 min. Reactions were
stopped at 0°C, and bound complexes were washed extensively in
intracellular buffer. Coated SVs were solubilized from the column by
either sample buffer to directly resolve the proteins in SDS-PAGE, or
in buffer B (50 mM Tris, pH 7.4; 300 mM NaCl; 5 mM EDTA, 1% Triton
X-100) incubated for 30 min at 4°C, from which AP-3
subunits were
immunoprecipitated and immunocomplexes were washed and analyzed as described.
AP-3 Recruitment Assays to PC12-Donor Endosomes
A PC12 N49A membrane fraction enriched in synaptic vesicle
endosome donor and devoid of plasma membrane (50,000-g
membranes) was prepared as described (Lichtenstein et al.,
1998
; de Wit et al., 1999
). To isolate radiolabeled donor
endosomes, cell were labeled as described (vide infra) and the 50K-g
membranes were resolved by sucrose gradient centrifugation as described
(Lichtenstein et al., 1998
). Briefly, PC12N49A cells were
incubated for 45 min at 15°C before homogenization. Homogenate was
sedimented at 1000 × g for 5 min, and the supernatants
were sequentially spun at 10,000 × g for 10 min and at
27,000 × g for 35 min (donor enriched membranes).
Donor membranes were resuspended in intracellular buffer at ~2-4
mg/ml. Assays were made with 50 µg of membranes and 2 mg/ml dialyzed
rat brain cytosol in the absence or presence of either ATP
S or
CKI-7. Reaction mixtures were incubated in ice for 15 min to be
transferred to 37°C for 20 min and stopped in ice for 5 min. Soluble
and membrane-bound proteins were separated by sedimenting the reaction
mixture through a 600-µl 12.5% sucrose cushion prepared in
intracellular buffer at 27,000 × g for 45 min. Pellets
were washed in cold intracellular buffer and were resuspended in sample
buffer to be analyzed by immunoblot with antibodies
directed to
3. The background AP-3 binding to membranes was
determined in complete reactions in the absence of any added nucleotide. Membrane load was determined by
immunoblotting with antibodies against synaptophysin
(SY38). Immunoblot quantitation was performed as described
(Faundez et al., 1997
). Usually AP-3 recruitment to
membranes increased 5.1 ± 3.3-fold (range, 2-10-fold; n = 5) over the background in the presence of ATP-regenerating system and
20 µM GMP-PNP .
Immunoprecipitations and Phosphorylation Assays
Brain AP-3 was immunoprecipitated from either rat brain cytosol
or mouse brain cytosol in native conditions or was purified to
homogeneity as described (Faundez et al., 1998
). Preimmune sera or affinity-purified anti-
3 antibodies were prebound to protein
G-Sepharose, and free antibody was washed away. Cytosol (0.25-0.6 mg
per assay) was diluted in either intracellular buffer or buffer A (10 mM HEPES, pH 7.4; NaCl 150 mM; EGTA 1 mM; and MgCl2 0.1 mM) and incubated overnight with the
antibody-Sepharose complex. Unbound material was removed by
extensively washing either in intracellular buffer or buffer A
supplemented with Triton X-100 0.1% followed by a wash in
intracellular buffer. Bead-bound immune complexes were resuspended in
250 µl of intracellular buffer. Before thiophosphorylation, beads
were incubated with or without drugs for 15 min at 0°C. Reactions
were initiated at 24°C with 20 µCi
[35S]ATP
S (65 Ci/mmol)) for the specified
times. Assays were stopped with 800 µl of ice-cold buffer A, 20 mM
EDTA, and the free nucleotide was washed away in buffer A, Triton X-100
0.1%. Thiophosphorylated proteins were eluted with Laemmli sample
buffer and were resolved by SDS-PAGE.
Purified bovine brain AP-3 complex (6 µg) was incubated in intracellular buffer in the absence or presence of different drugs at 0°C for 15 min. Thiophosphorylation was performed as previously described except that after stopping the assays in buffer A, 20 mM EDTA, proteins were TCA-precipitated from the reaction mixture and analyzed by SDS-PAGE.
Histone IIA, GST, and GST-fusion proteins (20 µg) were
thiophosphorylated in vitro in intracellular buffer (50 µl per assay) with liver-purified casein kinase I or II (10 U/assay), catalytic subunit of the cAMP-dependent kinase (10U/assay), or the catalytic tryptic fragment of brain protein kinase C (20 ng/assay).
Thiophosphorylation reactions were performed for 20 min at 24°C in
the presence of 20 µCi [35S]-ATP
S.
Reactions were stopped in buffer A, 20 mM EDTA, and proteins were
TCA-precipitated from the reaction mixture and analyzed by SDS-PAGE.
Protein labeling was analyzed in a STORM Phosphorimager, and the results were quantified using ImageQuant, version 1.2, software (Molecular Dynamics, Sunnyvale, CA).
Cell Labeling and Fractionation
PC12 cells containing the VAMP-TAg N49A mutation were labeled
with [125I]KT3 monoclonal antibody against the
T-antigen epitope tag as described (Clift-O'Grady et al.,
1998
; Faundez et al., 1998
). Briefly, cells were labeled at
0°C for 15 min and then were transferred at 15°C for 40 min. To
examine the effect of reagents on the in vivo generation of SVs, cells
were first labeled at 15°C then were treated in DME H-21, 10 mM
HEPES, pH 7.4, with either brefeldin A for 15 min at 0°C (Faundez
et al., 1997
) or with kinase inhibitors for 20 min at
15°C. In vivo vesicle production was resumed by heating the cells at
37°C. Reactions were stopped at 0°C. Homogenization, cell
fractionation, and synaptic vesicle production assessment were
performed as described (Faundez et al., 1997
; Clift-O'Grady et al., 1998
).
Other Procedures
KT3 monoclonal antibodies were iodinated by chloramine-T
(Faundez et al., 1992
). Protein assays were performed using
the Bio-Rad Protein Assay Dye Reagent (Bio-Rad, Richmond, CA) using BSA
as standard.
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RESULTS |
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AP-3 Recruitment to Synaptic Vesicles Requires ATP
AP-3 coat recruitment to synaptic vesicles is inhibited by
temperatures of
15°C (Faundez et al., 1998
). In
contrast, AP-2 adaptor recruitment to synaptic vesicles occurs at 4°C
and in the absence of nucleotides (Zhang et al., 1994
). To
address the presence of novel regulatory enzymatic mechanisms, we
analyzed the nucleotide requirements for AP-3 recruitment to synaptic vesicles.
The ATP requirement for AP-3 recruitment can be measured readily using
isolated synaptic vesicles. Labeled PC12 synaptic vesicles were
incubated with rat brain cytosol in the absence or presence of
different nucleotides and the GTP mutant form of ARF1 (Q71L). AP-3
recruitment was assessed as before (Faundez et al., 1998
) as
a shift in vesicle sedimentation in sucrose velocity gradients. In the
presence of an ATP-regenerating system and ARF1Q71L, protein from brain
cytosol was bound to synaptic vesicles (Figure
1). Removing nucleotides by cytosol
dialysis inhibited the process in a reversible manner. Adding back an
ATP-regenerating system restored coat binding to membranes. Coating
activity was supported equally well by the partially hydrolyzable ATP
analog ATP
S (200 µM), but not by the nonhydrolyzable ATP analogs
AMP-PCP and AMP-PNP at similar concentrations (Figure 1). Higher
nonhydrolyzable nucleotide analog concentrations or longer incubation
times did not restore the coating activity (data not shown). Since
ATP
S can substitute for ATP as a substrate for protein kinases
(Gratecos and Fischer, 1974
; Nichols et al., 1990
), these
results suggest that a phosphorylation reaction is required for the
AP-3 coat recruitment to synaptic vesicles.
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3 Subunit of the AP-3 Complex Is Thiophosphorylated
We performed labeling experiments with
[35S]ATP
S to identify putative
phosphorylated substrates that might account for the ATP/ATP
S
requirements in the coating reaction. We first modified the reaction to
establish the minimal concentration of nucleotides required for coating
synaptic vesicles. In the presence of an ATP-regenerating system (1 mM
ATP), GTP
S (20 µM) induced an ARF1-dependent AP-3 recruitment to
vesicles (Figure 2a; compare lanes 1 and
2). Likewise, AP-3 translocation to synaptic vesicles occurred in the
presence of ATP
S at concentrations as low as 150 µM, even in the
absence of GTP
S (Figure 2a; compare lanes 3 and 4). Since ARF1 does
not bind ATP (Kahn and Gilman, 1986
); this could represent an
interconversion of ATP
S to GTP
S by a nucleoside diphosphokinase activity present in rat brain cytosol (Seifert et al., 1988
;
Wieland and Jakobs, 1992
).
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When AP-3 recruitment to immunoimmobilized synaptic vesicles was
triggered in the presence of [35S]ATP
S, a
prominent thiophosphorylated band of 150 kDa could be detected if there
were synaptic vesicles on the beads (Figure 2b, lane 1); in the absence
of synaptic vesicles a 46-kDa thiophophorylated band was
nonspecifically bound to the protein G matrix. The 150-kDa band could
be immunoprecipitated by antibodies against the
3 subunit of the
AP-3 complex (Figure 2b, lane 5). No other thiophosphorylated bands
were apparent after solubilizing the coated synaptic vesicles.
We compared the effects of a broad-spectrum inhibitor of
serine-threonine kinases, staurosporine (Meggio et al.,
1995
), to the selective casein kinase inhibitor CKI-7 (Chijiwa et
al., 1989
). CKI-7 was studied since genetic interactions between
AP-3 complex subunits and casein kinase I genes have been reported in
yeast (Panek et al., 1997
). The presence of the
thiophosphorylated
3 subunit was decreased by CKI-7 or heparin,
another inhibitor of casein kinases (Zhai et al., 1995
)
(Figure 2b, lanes 2 and 3, 6 and 7) but not by high concentrations of
staurosporine (Figure 2b, lanes 4 and 8), which is unable to inhibit
casein kinases (Meggio et al., 1995
). Identical results were
obtained whether the total proteins were recruited to synaptic vesicles
(Figure 2b, lanes 1-4) or the immunoprecipitated
3 subunit were
analyzed (Figure 2b, lanes 5-8). Thus, the ATP requirement for coating could be to allow the phosphorylation of the
subunit of the AP-3 complex.
3 Subunits Are Selectively Thiophosphorylated in the Hinge
Region by Casein Kinase
Fusion proteins encompassing different segments of
3A and
3B
were used to define the regions phosphorylated by the protein kinases.
Sequence analysis predicted 22 D/EXXS consensus sites for casein kinase
I (Songyang et al., 1996
) clustered in the acidic hinge
regions of
3A, and 13 in
3B. Only fusion proteins encompassing the hinge domains of both
3 subunits, amino acids 643-809 and 647-796 of
3A and
3B, respectively, were thiophosphorylated by
purified casein kinase I (Figure 3, lanes
4, 7 and 8). Neither GST alone (Figure 3, lanes 1 and 6) nor the trunk
(amino acids 1-642 of
3A; Figure 3, lanes 2 and 3) nor the clathrin
binding region of the ear (amino acids 810-1094 and 799-1081 of
3A
and
3B, respectively (Figure 3, lanes 5 and data not shown) were substrates of the purified kinase. Although the corresponding subunits
of AP-1 and AP-2, the
1,
2 adaptins, are phosphorylated at the
hinge regions (Wilde and Brodsky, 1996
), they do not contain casein
kinase I consensus sites. Consistently, no thiophosphorylation by
casein kinase I above the level of GST was detected when a fusion
protein of the hinge-COOH terminal domain of
2 adaptin (amino acids
592-951) was used as a substrate (Figure 3; compare lanes 6 and 9).
Purified casein kinase II also thiophosphorylated the hinge domain of
3A, although three times less efficiently. The hinge domain of
3B
was thiophosphorylated with similar efficiency by both casein kinases
(data not shown). Neither cAMP-dependent kinase (Figure 3, lanes 11 and
12) nor protein kinase C (Figure 3, lane 15 and 16) thiophosphorylated
the
3 hinge regions. Under identical conditions, histone H2A was
efficiently thiophosphorylated by both of these kinases (data not
shown). These data show that the hinge regions of
3 chains are
selectively thiophosphorylated by casein kinase.
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A Casein Kinase I-like Activity Is Associated with the AP-3 Complex
An unidentified kinase activity has been reported to
coimmunoprecipitate with antibodies against
3B (Newman et
al., 1995
). To determine whether the kinase activity associated
with the AP-3 complex behaved like a casein kinase, brain AP-3
heterooligomers were immunoprecipitated with antibodies against
3
subunits, and the immune complexes were
[35S]ATP
S thiophosphorylated in vitro in the
absence or presence of kinase inhibitors. Anti-
3 antibodies brought
down the complex together with a kinase able to thiophosphorylate the
3 subunit. No such band was observed when preimmune antibodies were
used (Figure 4a; compare lanes 1 and 2).
The kinase activity associated with the AP-3 complex was sensitive to
CKI-7 and heparin (Figure 4a, lanes 3 and 5, respectively; and Figure
5b, dotted bar) but not to staurosporine
(Figure 4a, lane 4; Figure 5b, striped bar), characteristics of a
casein kinase. The kinase activity immunoisolated with the AP-3 complex
thiophosphorylated an exogenous substrate, which is a GST fusion
protein containing the hinge domain of
3B (data not shown). Casein
kinase II possesses a similar affinity for both ATP and GTP, whereas
casein kinase I uses ATP preferentially as a substrate (Edelman
et al., 1987
; Tuazon and Traugh, 1991
). To determine whether
casein kinase I or II is associated with AP-3, we performed
thiophosphorylation reactions using either [35S]ATP
S or
[35S]GTP
S as substrates.
[35S]ATP
S was an effective substrate for the
casein kinase activity associated with the complex (Figure 4b), whereas
no significant incorporation of the label into the
3 subunit was
detected using [35S]GTP
S. Both nucleotide
analogs thiophosphorylated the GST-
3B hinge fusion protein
indistinguishably when assayed as substrates for purified casein kinase
II (data not shown).
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Casein kinase I activity remained associated with AP-3,
even when purified to homogeneity in vitro by standard conditions (Faundez et al., 1998
). After the final MonoS purification
step, Coomassie staining of pure AP-3 showed only five bands that
corresponded to the
,
3, µ3, and
3A and
3B subunits
(Faundez et al., 1998
). When incubated with
[35S]ATP
S AP-3, the pure complex still
incorporated label in the
subunit as determined by its molecular
weight (Figure 4c, lane 1). As expected for a casein kinase I, this
endogenous phosphorylation was significantly sensitive to CKI-7 and
heparin (Figure 4c, lanes 2 and 3) but not to staurosporine or to an
excess of cold GTP
S (Figure 4c, lanes 4 and 5).
The casein kinase I isoform in the purified AP-3 complex could be
identified with isoform-specific antibodies (Figure 4d). Two
affinity-purified antibodies against casein kinase I
(RA and SC)
recognized the 37-kDa variant present in liver-purified casein kinase
I
(Figure 4d, lanes 1 and 3). The RA antibody also detected two
additional bands, probably corresponding to I
splicing variants
(Figure 4d, lane 1; Gross and Anderson, 1998
). Both antibodies cross-reacted with a 45-kDa band present in purified AP-3 (Figure 4d,
lanes 2 and 4). Neither the 37-kDa isoform of casein kinase I
nor
casein kinase I

(Figure 4d, lane 6) was detected in purified
AP-3 complex. Thus, the kinase activity in pure AP-3 is a 45-kDa
I
-like casein kinase.
We further characterized pharmacologically the I
-like
AP-3-associated casein kinase using DRB
(5,6-Dichloro-1-
-D-ribofuranosylbenzimidazole), an
inhibitor of casein kinases but not of protein kinases A and C (Meggio
et al., 1990
). Although DRB is structurally unrelated to
CKI-7, it inhibits at an IC50 of ~10 µM, a
value close to that reported for purified casein kinase I (Figure 5a)
(Chijiwa et al., 1989
; Meggio et al., 1990
).
The Neuronal AP-3 Complex Is Associated with Casein Kinase I
ATP-dependent AP-3 recruitment to synaptic vesicles is observed
using cytosol derived from the brain. Both the neuronal-specific
3
subunit (
3B) and the ubiquitous
3A are expressed in the brain, whereas the liver has only the ubiquitous form. We took advantage of
two members of the storage pool disease family of mutant mice to show
that neuronal AP-3 has a casein kinase 1
-like activity. Mocha mice
that do not express the
subunit lack both AP-3 complexes (Kantheti
et al., 1998
), whereas the pearl mice lacking
3A have only the brain form (Feng et al., 1999
). As a
control, we used another Hermansky-Pudlak-like family member,
pale ear, defective in a soluble protein that does not
interact with AP-3 (Gardner et al., 1997
; Dell'Angelica
et al., 2000). Antibodies against the
3 subunit
immunoprecipitate AP-3 complex with associated CKI-7-sensitive kinase
activity from normal brain cytosol (Figure 6, lanes 1-3). As expected, no
thiophosphorylated
3 subunit was detected when immunoprecipitations
were performed from mocha brain cytosol that was defective
in both kinds of AP-3 complex. Pearl or pale ear
AP-3 complexes were both thiophosphorylated by the CKI-7-sensitive
casein kinase I (Figure 6, lanes 8 and 9, 11 and 12). No
thiophosphorylation differences were detected among wild-type-, pearl-, and pale ear-derived AP-3 complexes.
Thus, since pearl brain has only the neuronal AP-3, the
neuronal AP-3 complex must be associated with, and modified by, casein
kinase I.
|
The casein kinase I
-like activity that copurifies with AP-3 is
likely to be responsible for the phosphorylation of the
subunit of
AP-3 on its hinge domain. To determine whether it was also responsible
for coat assembly, we returned to coat-recruitment assays.
If the requirement for hydrolyzable ATP reflects a need for casein
kinase I activity, then kinase inhibitors should inhibit the density
shift. The AP-3 recruitment required to bud synaptic vesicles from
transferrin receptor-positive donor endosomes (Lichtenstein et
al., 1998
) was discovered using purified synaptic vesicles (Faundez et al., 1998
). Synaptic vesicles selectively bind
AP-3 in a GTP-dependent manner (Faundez et al., 1998
), a
process that greatly increases their sedimentation rate in sucrose gradients.
The ATP
S-dependent AP-3 translocation from cytosol to synaptic
vesicle membranes was repeated either in the absence or presence of
kinase inhibitors. Although the density shift was insensitive to
staurosporine, it was decreased by 50% in the presence
of CKI-7 (Figure 7a). AP-3 also can be
recruited to synaptic vesicles attached to a matrix (Faundez et
al., 1998
). When ATP
S was used with matrix-bound vesicles, AP-3
recruitment, which was measured by the presence of
3 subunit, was
inhibited by 40 ± 17% (SE) (n = 7) by CKI-7, but not by
staurosporine (Figure 7b). To determine whether AP-3 recruitment to
endosomes was similarly inhibited, we used a 50K-g membrane fraction.
This fraction is free of synaptic vesicles but contains transferrin
receptor-positive donor endosome membranes, which are enriched 4-fold
in synaptic vesicle budding activity compared with total cell
homogenates (Lichtenstein et al. 1998
; de Wit et
al. 1999
). AP-3 binding to membranes was determined with
antibodies against
3. As with synaptic vesicles, ATP
S induced the
recruitment of AP-3 to donor-enriched membranes. CKI-7 prevented it to
a similar extent (Figure 7c). These results again suggest that casein
kinase I activity is required to recruit AP-3 to membranes. The
residual activity in the presence of inhibitors could be due to already
phosphorylated AP-3 complexes in the brain cytosol.
|
The donor endosomes have not yet been purified, and so recruitment of AP-3 to them cannot be measured. Although it would be preferable to measure binding to purified precursor membranes rather than product, it is currently only possible to purify the product. We attempted to measure a sedimentation chase in radioactively labeled donor endosomes. Radiolabeled VAMP N49A TAg donor endosomes had only slightly increased sedimentation in the presence of nonhydrolyzable GTP (from 29.6 ± 0.3% to 32.3 ± 0.7% sucrose, n = 3), presumably because a smaller fraction of their membranes is coated. This density shift was not, however, entirely due to AP-3 recruitment, since donor endosomes also changed their sedimentation if AP-3-deficient mocha brain cytosol was used (31.2 ± 0.1% sucrose, n = 3). This is not surprising since transferrin-containing vesicles can bud from the same precursor endosomes in an AP-3-independent manner (Lichtenstein and Kelly, unpublished observations).
Casein Kinase I Inhibition Hinders In Vivo Synaptic Vesicle Formation From Endosomes
If phosphorylation of the
3 subunit by casein kinase I is
important for synaptic vesicle production, the CKI-7 inhibitor should
inhibit synaptic vesicle formation from labeled endosomes in living
cells. To test this prediction, PC12N49A cells expressing an
epitope-tagged mutant VAMP, were labeled with
[125I] KT3 anti-TAg antibodies at 15°C. After
washing away the unbound antibody, cells were incubated at 15°C in
the absence or presence of kinase inhibitors. To allow synaptic vesicle
formation, cells were warmed to 37°C then homogenized. A high-speed
supernatant was analyzed by glycerol velocity gradient centrifugation
to measure synaptic vesicle production. Vesicle biogenesis was
initiated from the 15°C-labeled endosomes at 37°C (Figure
8a, closed circles) but not at 4°C
(Figure 8a, open circles). The casein kinase I inhibitor CKI-7 (500 µM) inhibited vesicle generation ~50% (Figure 8a, open triangles).
After washing the drug out, the CKI-7-mediated block was completely
reversed after 20 min (Figure 8a, open squares). The fast reversibility
of the block argues against a nonspecific toxic effect of the drug.
Staurosporine, which does not inhibit AP-3-associated casein kinase I,
did not affect vesicle budding (Figure 8a, closed squares). The
CKI-7-mediated inhibition of vesicle production was dose-dependent with
an IC50 of ~500 µM (Figure 8b, n = 7), a
concentration 50 times higher than that required to inhibit casein
kinase I activity in vitro (Figure 5a). It is similar, however, to
concentrations that are needed to block casein kinase I in vivo
(Beyaert et al., 1995
; Bioukar et al., 1999
). A
possible explanation of the difference in IC50 between the in vitro phosphorylation and the in vivo vesicle production is the 100-fold higher ATP concentration in intact cells, since the
inhibitors interact with the ATP-binding site (Xu et al., 1996
).
|
Brefeldin A also reversibly blocks the generation of synaptic
vesicles from endosomes, presumably because GTP-ARF is needed to
recruit the AP-3 coat (Faundez et al., 1997
, 1998
). If
casein kinase-mediated phosphorylation is needed for coat recruitment, then inhibiting the kinase activity should inhibit synaptic vesicle formation after brefeldin A is removed.
To determine where the in vivo CKI-7 block occurs with respect to the brefeldin A-mediated endosomal budding block, PC12N49A cells were labeled with [125I] KT3 anti-TAg antibody at 15°C, were washed of uninternalized antibody, and were incubated in brefeldin A for 30 min at 37°C to release coats from endosomes and to prevent vesicle formation. As previously reported, brefeldin A blocked vesicle production reversibly (Figure 8c). However, if brefeldin A was removed in the presence of CKI-7, vesicle biogenesis again was inhibited by 50% (Figure 8c). These results show that casein kinase I is required in a step during or after AP-3 recruitment to membranes.
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DISCUSSION |
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|
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The AP-3-associated Kinase Activity
The first indication of an AP-3 adaptor complex was the discovery
of subunits with similarities to the µ (Pevsner et al., 1994
) and
chains (Newman et al., 1995
) of AP-1 and AP-2.
Subsequently
and
subunits of AP-3 were identified
(Dell'Angelica et al., 1997a
,b
; Ooi et al.,
1997
; Simpson et al., 1997
). Deletions of AP-3 subunits
rescued endocytosis of Ste3p in yeast mutants defective in yeast casein
kinase genes yck1 and yck2 (Panek et
al., 1997
) and also inhibited the traffic of membrane proteins to
yeast vacuolar elements (Cowles et al., 1997
; Stepp et
al., 1997
). Consistent with a role for AP-3 in endosomal
trafficking, mutant AP-3 in Drosophila, mice, and humans affected
organelles such as melanosomes or platelet-dense granules, the
synthesis of which has been linked to the endosomal trafficking pathway
(Simpson et al., 1997
; Kantheti et al., 1998
; Ooi
et al., 1997
; Dell'Angelica et al., 1999
; Feng et al., 1999
). A link between AP-3 and a population of
synaptic vesicles is provided by the mocha mouse. The
mocha mouse, which lacks neuronal as well as nonneuronal
AP-3, fails to make a subclass of synaptic vesicles (Kantheti et
al., 1998
) or to make vesicles of incorrect composition.
Genetic and biochemical data link AP-3 strongly to membrane traffic,
which is not surprising given the similarity in composition between
AP-3 and the AP-1 and AP-2 adaptor complexes. All AP-3 complexes have a
large
subunit and a small
3A or
3B subunit. Nonneuronal forms
of AP-3 have µ3A and
3A subunits, whereas neuronal forms have
µ3B and
3B subunits (reviewed in Odorizzi et al., 1998
). Both
3A and
3B subunits were known from earlier work to be
phosphorylated (Newman et al., 1995
; Dell'Angelica et
al., 1997b
). Here we have shown that phosphorylation can be
attributed to a kinase that copurifies with AP-3 and that
phosphorylates both
3A and
3B, but not the
subunit of AP-2,
on their hinge regions. The kinase might not have been detected in
protein stains of purified AP-3 because its mobility is too close to
that of the µ3 subunit (45 kDa). Alternatively, the kinase may be
substoichiometric. The kinase can act in trans, since adding
3 hinge
regions to immunopurified AP-3 causes hinge phosphorylation.
The kinase activity complexed with AP-3 has properties similar to
casein kinase I
. Neither cAMP-dependent protein kinase nor protein
kinase C were capable of phosphorylating the hinge regions.
Furthermore, the AP-3 kinase activity was insensitive to staurosporine,
a promiscuous inhibitor of serine-threonine kinases (Meggio et
al., 1995
). The casein kinases were attractive candidates because
they prefer to phosphorylate near acidic amino acids (Tuazon and
Traugh, 1991
), which are rich in the
3 hinge region, because of the
genetic interactions in yeast between AP-3 and casein kinase (Panek
et al., 1997
) and because casein kinases are insensitive to
staurosporine (Meggio et al.,1995
). Inhibition of kinase
activity by CKI-7 and DRB at 10
5 M is also
diagnostic of casein kinases. The activity is more like casein kinase I
than II because it cannot use GTP (Tuazon and Traugh, 1991
) and is
recognized by antibodies to casein kinase I
. Seven isoforms of
casein kinase I have been identified (
,
,
1-3,
, and
) (Gross and Anderson,
1998
), and casein kinase 1
has at least four different splicing
variants (Green and Bennett, 1998
). The diversity may account for the
wide range of substrates and cellular locations of the casein kinase 1 family (Gross and Anderson, 1998
). The activity that copurifies with AP-3 is 45 kDa and, so, differs from the 37-kDa isoform already described in synaptic vesicles (Gross et al., 1995
).
Physiological Significance of AP-3 Phosphorylation
The AP-3-associated kinase activity appears to have physiological
significance. AP-3-mediated coating of purified synaptic vesicles was
found to be inhibited by agents that inhibited casein kinase I
activity. It is likely that the hinge region of the
subunit of AP-3
is the major site of phosphorylation during the coating event. Thus, an
attractive model is that phosphorylation of AP-3 changes its
conformation, allowing it to become active in coating. The inhibition
of PC12 synaptic vesicle formation from endosomes labeled in the
presence of brefeldin A suggests that coating by phosphorylated AP-3 is
needed for vesicle production. The lack of specificity for forms of
AP-3 may mean that CKI-7 may interfere with AP-3-mediated events even
in nonneuronal cells. At present, we cannot discriminate between a
phosphorylation requirement for initial AP-3 recruitment and AP-3 coat
assembly. Nor can we eliminate the possibility that low levels of cargo
phosphorylation or inositol phospholipid phosphorylation
(Gaidarov and Keen, 1999
) also are required.
The activation of AP-3 by casein kinase provides a means of regulating
how much of the synaptic vesicle production is from endosomes. Although
casein kinase I was originally defined as a constitutive enzyme (Tuazon
and Traugh, 1991
), independent of upstream regulators, increasing
evidence links it to regulators such as G-protein-coupled receptors,
tyrosine kinases, phosphatases, and inositol phospholipids
(Gross et al., 1995
; Cegielska et al., 1998
;
Bioukar et al., 1999
). Phosphorylation of muscarinic
receptors and rhodopsin, for example, by casein kinase I is
stimulus-dependent (Tobin et al., 1997
; Waugh et
al., 1999
), and the binding of insulin to its receptor activates
casein kinase I activity (Cobb and Rosen, 1983
). Alternatively,
however, casein kinase I activity could be constitutive in PC12 cells,
and the AP-3 pathway could be regulated via a phosphatase activity.
Both plasma membrane and the cytosolic components required to form
clathrin-coated vesicles are likely to be regulated by phosphorylation.
The polyphosphoinositide-binding site of the
subunit of AP-2 is
required for targeting to clathrin-coated pits (Gaidarov and Keen,
1999
), implying that lipid kinases could modulate adaptor recruitment.
Consistently, adaptor-dependent, de novo-coated pit
formation requires ATP, although it is presently unknown whether this
reflect lipid or protein modification (McLauchlan et al.,
1997
). Cytosolic AP-2 is phosphorylated, whereas AP-2 on membranes is
not (Wilde and Brodsky, 1996
), implying that AP-2 dephosphorylation
could be necessary for recruitment to its donor compartment. ATP and
ATP
S, but not AMP-PNP, can release AP-2 that has been recruited to
synaptotagmin, suggesting that phosphorylation may reverse the coating
steps (Zhang et al., 1994
). Dephosphorylation of components
of endocytic machinery also appears to be necessary in vivo. When
calcium enters the nerve terminal, calcineurin triggers the
dephosphorylation of dynamin, amphiphysin, synaptojanin, epsin, and
eps15, allowing them to assemble with AP-2 into a macromolecular complex, which presumably is required for the internalization of plasma
membrane (Bauerfeind et al., 1997
; Slepnev et
al., 1998
; Chen et al., 1999
). The dephosphorylation of
-arrestin also is required for its association with clathrin (Lin
et al., 1997
).
ATP and a casein kinase I
-like activity appear to be required for
AP-3 recruitment to membranes and for synaptic vesicle formation from
endosomes. Now that coating can be studied in a relatively well-defined
system, it should be possible to define what regulates phosphorylation
and dephosphorylation and the exact steps in the coating process at
which they occur.
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ACKNOWLEDGMENTS |
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We wish to thanks Drs. D. Shields, E. Dell'Angelica, R. Anderson and R. Swank for gifts of antibodies, DNAs, and mice. The research was supported by National Institute of Health grants NS09878, NS15927, and DA10154.
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FOOTNOTES |
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* Corresponding author. E-mail address: rkelly{at}biochem.ucsf.edu.
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REFERENCES |
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