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Vol. 12, Issue 1, 185-199, January 2001
Regulatory Subunit But Not SG2NA,
Striatin, or Polyomavirus Middle Tumor Antigen


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Department of Biochemistry and Winship Cancer Center, Emory University School of Medicine, Atlanta, Georgia 30322.
Submitted June 1, 2000; Revised October 25, 2000; Accepted October 30, 2000| |
ABSTRACT |
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Binding of different regulatory subunits and methylation of the
catalytic (C) subunit carboxy-terminal leucine 309 are two important
mechanisms by which protein phosphatase 2A (PP2A) can be regulated. In
this study, both genetic and biochemical approaches were used to
investigate regulation of regulatory subunit binding by C subunit
methylation. Monoclonal antibodies selectively recognizing unmethylated
C subunit were used to quantitate the methylation status of wild-type
and mutant C subunits. Analysis of 13 C subunit mutants showed that
both carboxy-terminal and active site residues are important for
maintaining methylation in vivo. Severe impairment of methylation
invariably led to a dramatic decrease in B
subunit binding but not
of striatin, SG2NA, or polyomavirus middle tumor antigen (MT) binding.
In fact, most unmethylated C subunit mutants showed enhanced binding to
striatin and SG2NA. Certain carboxy-terminal mutations decreased B
subunit binding without greatly affecting methylation, indicating that
B
subunit binding is not required for a high steady-state level of C
subunit methylation. Demethylation of PP2A in cell lysates with
recombinant PP2A methylesterase greatly decreased the amount of C
subunit that could be coimmunoprecipitated via the B
subunit but not
the amount that could be coimmunoprecipitated with A
subunit or MT.
When C subunit methylation levels were greatly reduced in vivo, B
subunits were found complexed exclusively to methylated C subunits,
whereas striatin and SG2NA in the same cells bound both methylated and
unmethylated C subunits. Thus, C subunit methylation is critical for
assembly of PP2A heterotrimers containing B
subunit but not for
formation of heterotrimers containing MT, striatin, or SG2NA. These
findings suggest that methylation may be able to selectively regulate
the association of certain regulatory subunits with the A/C heterodimer.
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INTRODUCTION |
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Although it is well established that phosphorylation of a single
amino acid can regulate protein-protein interactions and enzyme
activities in eukaryotes, the effect of methylation of a single residue
is less well understood. Irreversible methylation on multiple arginines
has been shown to inhibit certain protein-protein interactions (Bedford
et al., 2000
) and to affect cellular processes such as
nuclear export (Shen et al., 1998
) and
transcription (Chen et al., 1999
). However, mutational
studies that would establish the role of a single arginine methylation
have not been carried out to our knowledge. Even less is known about
the role of carboxy methylation in eukaryotic systems. In the best
understood case, neutralization of the processed CAAX carboxy terminus
of Ras by a single carboxy methylation appears to promote hydrophobic
interactions with membrane lipids (Farh et al., 1995
),
enhancing the localization to the plasma membrane (Hrycyna et
al., 1991
; Bergo et al., 2000
). However, the effect of
G protein carboxy methylation on protein-protein interactions is not
well understood. The catalytic subunit of protein phosphatase 2A (PP2A)
is also known to be carboxy methylated on its C-terminal residue
(Rundell, 1987
; Lee and Stock, 1993
; Favre et al., 1994
; Li
and Damuni, 1994
; Xie and Clarke, 1994
), although the function of this
methylation is presently unclear. PP2A methylation is reversible and
PP2A methylesterase (Ogris et al., 1999a
) and
methyltransferase enzymes (De Baere et al., 1999
) have been
cloned, thus providing an interesting model system amenable to the
study of the potential regulatory effects of reversible protein methylation.
PP2A is a major eukaryotic protein phosphatase that is highly conserved
and is known to be involved in the regulation of multiple cellular
events (reviewed in Cohen, 1989
; Mumby and Walter, 1993
; Hopkin, 1995
),
including transcription, translation, DNA replication, development,
neuronal signaling, cell cycle progression, and cell division. To allow
PP2A to function independently in these diverse roles, a variety of
regulatory subunits exist that localize PP2A to specific cellular
microenvironments and/or signaling pathways and modulate PP2A activity
(for examples, see Cohen, 1989
; Murata et al., 1997
; Moreno
et al., 2000
). Although some regulatory subunits (e.g.,
alpha4; Murata et al., 1997
) appear to bind and regulate only the PP2A catalytic subunit, most of these subunits associate with
and regulate a heterodimeric A/C form of PP2A that consists of a 36-kDa
catalytic (C) subunit and a 63-kDa constant regulatory (A) subunit
(Usui et al., 1988
).
The regulatory subunits that bind the A/C heterodimer can be divided
into several families. The best characterized are the three major
families of B-type subunits, B (or B55), B' (or B56), and B'' (or
PR72/130). In addition, we recently described two members of a new
family of PP2A regulatory subunits that bind the A/C heterodimer,
striatin and SG2NA (Moreno et al., 2000
). Moreover, a family
of papovavirus PP2A regulatory subunits exists that includes simian
virus 40 and polyomavirus small tumor antigens and polyomavirus middle
tumor antigen (MT) (Pallas et al., 1990
). In all these
cases, the PP2A core A/C heterodimer is found complexed with the
regulatory subunit, and the substrate specificity and activity of PP2A
are modulated (Yang et al., 1991
; Cayla et al., 1993
; Cegielska et al., 1994
; Kamibayashi et al.,
1994
; Mayer-Jaekel et al., 1994
; Ogris et al.,
1997
; Moreno et al., 2000
).
Little is known about how the association of the A/C heterodimer with
the various regulatory subunits might be modulated. Differential
expression of the various cellular regulatory subunits during
development and differentiation may account for one level of regulation
(for review, see (Mumby and Walter, 1993
), but some evidence suggests
the existence of a more dynamic means of altering PP2A complex
composition (Chen et al., 1992
; Ogris et al.,
1997
; Zhu et al., 1997
). For example, tyrosine 307 of the
catalytic subunit can be phosphorylated in vitro by
pp60c-src, resulting in 90% inhibition of PP2A
activity (Chen et al., 1992
). Substitution of this same
tyrosine with an acidic residue abolishes binding in vivo of the A/C
heterodimer to B subunit, but not to MT (Ogris et al.,
1997
), suggesting that covalent modification of the C subunit carboxy
terminus might selectively regulate association of certain regulatory subunits.
PP2A C subunit methylation has been shown to occur both in vivo and in
cell lysates (Rundell, 1987
; Lee and Stock, 1993
; Favre et
al., 1994
; Li and Damuni, 1994
; Xie and Clarke, 1994
). The effect
of methylation on PP2A activity is controversial, with some studies
indicating up to a twofold increase in specific activity (Favre
et al., 1994
; Kowluru et al., 1996
) and another
finding no effect (De Baere et al., 1999
). Although C
subunit methylation appears to occur in vivo in a cell cycle-regulated
manner (Floer and Stock, 1994
; Turowski et al., 1995
), the
molecular mechanisms controlling such changes and the PP2A function(s)
affected are not yet understood. In addition, those residues in the C
subunit important for methylation and demethylation remain to be
determined. Peptide substrate studies may not be helpful in their
identification because earlier studies have shown that synthetic C
subunit carboxy-terminal peptides functioned neither as substrates nor
inhibitors of the PP2A methyltransferase (Xie and Clarke, 1994
) and
PP2A methylesterase (Lee et al., 1996
).
The carboxy-terminal region of the PP2A C subunit seems to be a focal
point for regulation of PP2A. In addition to containing the amino acids
identified as the sites of tyrosine phosphorylation and methylation,
this region contains residues essential for stable binding of the B
regulatory subunit (Ogris et al., 1997
). Deletion of the
nine highly conserved C-subunit carboxy-terminal residues (amino acids
301-309) or nonconservative substitution of threonine 304 and tyrosine
307 abolished the C subunit's ability to form complexes with B
subunit. However, these mutants could still form heterotrimers
containing the viral regulatory subunit, MT (Ogris et al.,
1997
). Based on this finding, we proposed that covalent modification of
the C subunit carboxy terminus might selectively regulate the
association of certain PP2A regulatory subunits (Ogris et
al., 1997
). In this report we present four lines of evidence that
methylation of leucine 309 is required for the association of the A/C
heterodimer with B
subunit but not with certain other cellular and
viral PP2A regulatory subunits. Two genetic approaches used point
mutants and deletion of leucine 309 to observe that loss of methylation
results in loss of B
subunit association but not of MT, SG2NA, or
striatin. Two biochemical approaches decreased methylation of C subunit
in vitro and in vivo to determine the effect on association of these
regulatory subunits. In each case, methylation was essential for
binding of B
subunit but not for MT, SG2NA, or striatin. These
results suggest that reversible carboxy methylation may be a mechanism
for selectively regulating the formation of certain PP2A heterotrimers.
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MATERIALS AND METHODS |
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Plasmids
Wild-type (wt) PP2A A
and B
subunit cDNAs (Hemmings
et al., 1990
; Pallas et al., 1992
) and a cDNA
encoding a mutant PP2A C subunit lacking the carboxy-terminal leucine
were individually cloned into a dexamethasone-inducible vector, pGRE
5-2 (Mader and White, 1993
), to try to minimize the potential
deleterious effects of overexpression (if any) while the lines were
being carried in culture. To accomplish this, wt PP2A A
and B
subunit cDNAs with an NcoI site containing the start ATG
were first cloned into pcDNA I Amp (Invitrogen, San Diego, CA),
together with a double-stranded oligonucleotide, which introduced at
the 5'-end the coding sequence for a nine-amino acid peptide
(TyrProTyrAspValProAspTyrAla) from influenza hemagglutinin (HA),
followed by the thrombin recognition site (LeuValProArgGlySer). Then,
the A
and B
subunit cDNAs, including the epitope tag sequence,
were cloned into pGRE 5-2. Beginning with a previously described
pGRE5-2 construct carrying epitope-tagged wt C subunit (Ogris et
al., 1997
), deletion of the C subunit carboxy-terminal leucine was
performed by standard cloning techniques. This mutant cDNA, including
the epitope tag sequence, was then cloned into pGRE 5-2.
Based on sequence homology to related crystallized phosphatases, four
residues, which were predicted to be in the catalytic site of mammalian
PP2A (histidine 59, aspartic acid 85, arginine 89, and histidine 118;
Table 1) were individually mutated
as described by Ogris et al. (1999a
,b
). PP2A activity was
undetectable, confirming that these residues are indeed important for
PP2A catalysis.
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Production of Monoclonal Antibodies Sensitive to the C Subunit Methylation State
A 15-residue unmethylated PP2A C subunit carboxy-terminal peptide was conjugated to keyhole limpet hemocyanin via an added amino-terminal cysteine residue using a Imject conjugation kit (Pierce, Rockford, IL) . BALB/c female mice were immunized, boosted on d 7, 14, 21, and 28, and then euthanized by rapid asphyxiation on d 31. Splenocytes were fused to SP2/0 murine myeloma cells by using polyethylene glycol and standard techniques. The cells were then washed and plated into microtiter wells, which were screened after 10-14 d using an enzyme-linked immunosorbent assay in which wells were coated with the unconjugated peptide. A secondary screen was performed by immunoblotting NIH3T3 cell lysates, and positive clones were single-cell cloned by limiting dilution. Three monoclonal antibodies specific for the PP2A C subunit, 1d6, 4b7, and 4e1, were obtained.
Cells and Cell Culture
MT-transformed NIH3T3 cell lines expressing HA epitope-tagged wt
or mutant PP2A C subunits (36wt [wt], 301stop, T301D, T304D, T304A,
T304N, T304K, Y307E, Y307F, Y307Q, and Y307K) or empty vector (GREonly)
were described previously (Ogris et al., 1997
). Only ~10%
of PP2A C subunits are bound to MT in these cells (Haehnel and Pallas,
unpublished data). These lines were maintained in DMEM/10% calf serum
containing 150 µg/ml hygromycin B and 200 µg/ml geneticin. To
generate cell lines individually expressing HA-tagged wt PP2A B
subunit, wt PP2A A
subunit, or C subunit lacking leucine 309 (L309
), NIH3T3 cells (MT-transformed in the case of L309
) were
transfected with pGRE 5-2 vectors expressing the appropriate HA
epitope-tagged proteins by the calcium phosphate precipitation method
(Sambrook et al., 1989
). Vector (20 µg) encoding the
HA-tagged B, A, or mutant C subunit were cotransfected with 2 µg of a
plasmid conferring resistance to hygromycin B. Selection medium
contained 300 µg/ml hygromycin B. In each case, hundreds of
individual clones were pooled and used for the experiments described
herein. These lines were maintained in DMEM/10% calf serum containing
150 µg/ml hygromycin B and, in the case of L309
, 200 µg/ml
geneticin as well. Although the inducible vector, pGRE5-2, was used to
express these proteins, levels of HA-tagged B
subunit, A
subunit,
and L309
proteins were substantial in the absence of dexamethasone.
A similar result was found previously when the same vector was used to
express wt and mutant PP2A C subunits in NIH3T3 cells (Ogris et
al., 1997
). However, dexamethasone treatment was used in most
cases to obtain maximal expression. Control experiments showed that the
dexamethasone treatment had no effect on PP2A methylation (data not shown).
Use of Methylation-sensitive C Subunit Monoclonal Antibodies to Assay PP2A Methylation
The primary methylation assay used in this study involved the
use of methylation-sensitive antibodies to evaluate PP2A methylation (Turowski et al., 1995
). It assays the steady-state
methylation level of C subunit directly (labeling of PP2A methyl groups
to steady-state may take many hours in a radioactive assay). In
addition, this assay is not affected by variability in uptake of label
between different cell lines, differences in turnover of the methyl
group between different mutants, or effects of the inhibitor treatments necessary to prevent label incorporation into protein during the in
vivo assay. The details of this assay are presented in the legend to
Figure 3. A small, but consistent, decrease in signal was seen in the
base-treated immunoprecipitate lanes using a methylation-insensitive anti-PP2A antibody (Transduction Laboratories, Lexington, KY) to
probe for C subunit, indicating that there was some loss of C subunit
epitopes during base treatment. An equivalent decrease was seen when
mutants known to be unmethylated (as assayed by in vivo labeling) were
blotted with 4b7. Quantitation of the nonspecific signal decrease
caused by base treatment by using methylation-insenstive C subunit
antibody facilitated correction for this nonspecific loss of C subunit
signal (e.g., for data shown in Figure 3 the average correction for
loss of C subunit signal was 11.5 ± 6.6%).
This assay can also be used to determine the methylation level of mutant C subunits in which the mutation partially impairs the binding of the methylation-sensitive antibody (although most in this study do not). The reason that such a mutant can still be accurately analyzed by this assay is that percentage methylation is determined by normalizing the 4b7 signal on an untreated sample with the 4b7 signal of an equivalent, unmethylated (base-treated) sample. This normalization corrects for any decrease in 4b7 signal due to mutation. The only problematic effect of a mutation would be 1) if 4b7 does not recognize a mutant at all (not a problem for the mutants we analyzed) or 2) if the mutation somehow strengthened the binding of 4b7 so that it bound even when the mutant was methylated. In the latter case, such mutants might appear as unmethylated or partially methylated when, in fact, they are fully methylated. For this reason, we have analyzed every mutant that appeared only partially methylated or unmethylated (see Figure 4) by a radioactive labeling assay to be sure that this is not the case in the present study.
In Vivo Methylation Assay
The in vivo methylation assay was used as a backup method.
Approximately 80% confluent dishes of cells were washed twice with DMEM lacking L-methionine and incubated 1 h in DMEM
lacking L-methionine supplemented with 5% dialyzed fetal
calf serum, 5 µm cycloheximide (Sigma, St. Louis, MO), and 30 µg/ml
puromycin (Sigma). Then, L-[methyl-3H]methionine
(Amersham Pharmacia Biotech, Piscataway, NJ) was added to a
final concentration of 100 µCi/ml. Preincubation of the cells with 5 µM cycloheximide and 30 µg/ml puromycin prevents translational incorporation of subsequently added radiolabeled methionine into newly synthesized proteins (Favre et al.,
1994
; Kowluru et al., 1996
); the fact that no radioactivity
was detected in certain PP2A mutants indicates that protein synthesis
was indeed completely inhibited. After labeling for 5 h, the cells
were washed, scraped into 1 ml of ice-cold wash buffer, and centrifuged
at 3000 × g for 1 min. The supernatant was discarded,
and the cells were lysed at 4°C for 3 min in 55 mM Tris, pH 8.0, 55 mM NaCl, 0.2 mM DTT, 1.0 mM CaCl2, 1.0 mM
MgCl2, and 0.55% Nonidet P-40 (Rundell, 1987
)
containing okadaic acid (100 nM final concentration). This
concentration of okadaic acid prevents the loss of already incorporated
radiolabeled methyl groups during subsequent immunoprecipitation by
inhibiting the PP2A methylesterase (Lee et al., 1996
). The lysates were cleared at 13,000 × g for 5 min, and the
resulting supernatants were immunoprecipitated. Immunoprecipitates were analyzed by SDS-PAGE, proteins were transferred to nitrocellulose, and
3H-methyl incorporation and amount of C subunit
protein were, respectively, visualized by a phosphorimager (Fuji,
Tokyo, Japan) and a fluorimager (STORM, Molecular Dynamics, Sunnyvale,
CA). For immunoblotting, methylation-insensitive mouse
monoclonal anti-HA tag antibody (16B12; BAbCO, Richmond, CA) or
anti-PP2A C subunit antibody (Transduction Laboratories), alkaline
phosphatase-conjugated secondary antibody (Promega, Madison, WI), and
Attophos substrate (JBL Scientific, Northridge, CA) were used.
In Vitro Demethylation with PP2A Methylesterase (PME-1)
Two 15-cm dishes of each cell line expressing HA-tagged A
or
B
subunits or MT were lysed as described by Moreno et al.
(2000)
, except that the lysis buffer contained 55 mM Tris (pH 8.0), 55 mM NaCl, 0.5 mM dithiothreitol, 1 mM CaCl2, 1 mM
MgCl2, and 0.55% Nonidet P-40. The cleared
lysates were divided into two equal portions. PME-1 (2-16
µg/reaction, depending on the activity of the preparation), purified
from bacteria expressing recombinant 6× His-tagged PME-1, was added to
one portion of each lysate to demethylate C subunit and was incubated
for 1-2 h at 31°C. Lysates were then further analyzed, as described
in the legend to Figure 6.
Immunoprecipitations
Immunoprecipitation of PP2A complexes via HA-tagged wt or mutant
PP2A A, B, and C subunits or via MT, striatin, or SG2NA was performed
using anti-HA tag monoclonal antibody (12CA5; obtained from BAbCO, but
now carried by Boehringer Mannheim, Indianapolis, IN) or anti-MT,
striatin, or SG2NA polyclonal antibodies plus protein A-Sepharose beads
(Pharmacia, Piscataway, NJ) (Moreno et al., 2000
; Pallas
et al., 1986
). In some cases, covalently cross-linked 12CA5
antibody/bead complexes were used to reduce background at the position
of B
subunit and MT.
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RESULTS |
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Association of Regulatory Subunits with a PP2A C Subunit Mutant Lacking Leucine 309
To investigate the possibility that methylation of C subunit
leucine 309 might selectively regulate the association of certain regulatory subunits, we assayed whether deletion of this residue would
have a different effect on the association of B
subunit, MT,
striatin, and SG2NA. Anti-HA tag immunoprecipitates were prepared from
MT-transformed NIH3T3 cell lines individually expressing either
HA-tagged wt C subunit (wt) or HA-tagged mutant C subunit lacking only
leucine 309 (L309
), and the immunoprecipitates were then probed for
the presence of A and B
subunits and MT by
immunoblotting (Figure
1A). L309
associated with substantial
A subunit and MT, indicating that A/C/MT heterotrimers can form
independently of this residue. However, even on long exposures, no B
subunit could be seen in the L309
immunoprecipitate, indicating that
loss of leucine 309 abrogates B
subunit binding.
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Epitope-tag immunoprecipitates of HA-tagged C subunit do not
efficiently immunoprecipitate striatin and SG2NA (Yu, Du, Moreno and
Pallas, unpublished data), presumably because binding of the epitope tag antibody is blocked. Therefore, to determine whether C
subunit leucine 309 is important for striatin and SG2NA binding, striatin and SG2NA immunoprecipitates and lysates were probed for the
presence of endogenous, HA-tagged wt, and L309
C subunits (Figure
1B). The amounts of these C subunits were quantitated using a Fluor
S-Max chemilumimager (Bio-Rad, Richmond, CA), which directly
measures band intensities without the use of film via a supercooled
charge-coupled device camera that provides linear data over 4.8 orders
of magnitude. This method yielded highly reproducible results that did
not vary with image capture times. For both lysates and
immunoprecipitates, the percentage of total C subunit that each
HA-tagged C subunit constitutes was determined. The calculated
percentage for each immunoprecipitate was divided by the calculated
percentage for the corresponding lysate to determine the fold
enrichment of wt and L309
in immune complexes. Addition of the
HA-tag to wt C subunit increased its ability to compete with endogenous
C subunit for binding to striatin and SG2NA approximately twofold. In
contrast to the loss of binding observed for B
subunit, L309
bound to striatin and SG2NA fourfold better than wt. Collectively, these results are consistent with the possibility that methylation of
leucine 309 may selectively regulate binding of certain regulatory subunits.
Methylation-sensitive Monoclonal Antibody, 4b7, Recognizes Only Demethylated PP2A C Subunit
To develop a quantitative assay to measure the methylation levels
of PP2A, monoclonal antibodies were raised to an unmethylated peptide
corresponding to the last 15 amino acids of the catalytic subunit (see
MATERIALS AND METHODS). To demonstrate the methylation sensitivity of
these monoclonal antibodies, a methylated C subunit carboxy-terminal
octomer peptide was synthesized and high-pressure liquid chromatography
purified and used for a dot blot analysis. One aliquot of this peptide
was demethylated by brief treatment with base and spotted onto
nitrocellulose along side an equal amount of methylated peptide. Figure
2 shows the results of probing this
membrane with 4b7, the antibody used here for methylation assays (see
below). 4b7 strongly recognized the base-treated, unmethylated C
subunit carboxy-terminal peptide but could not detect the methylated
peptide, indicating that it is completely specific for unmethylated C
subunit.
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Steady-State Methylation Levels of C Subunit Mutants
A combination of methods was used to analyze the
methylation status of various C subunit mutants to determine whether
methylation correlated with their ability to bind various regulatory
subunits. As with the L309
mutant analyzed above, all of these
mutants retain substantial native structure, as evidenced by their
ability to associate with A subunit and polyomavirus MT (Ogris et
al., 1997
, 1999a
,b
). We first measured the in vivo methylation
level of the wt and mutant C subunits with an assay using a monoclonal antibody (4b7) specific for demethylated C subunit (see MATERIALS AND
METHODS and Figure 3). In this assay,
base treatment was used to demethylate half of each immunoprecipitated
C subunit before immunoblotting with 4b7 to detect
unmethylated C subunits in the treated and untreated samples (Figure
3).
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Figure 3A shows the methylation status of wt C subunit, four
mutant C subunits with substitutions at threonine 304, and one mutant C
subunit with a substitution at threonine 301. Anti-HA tag
immunoprecipitates prepared from control cells containing empty vector
(GRE only lane) showed no immunoreactivity at the position of C subunit
either without (
) or with (+) base treatment. Anti-HA tag
immunoprecipitates of wt C subunit (wt), on the other hand, showed low
immunoreactivity in the absence of base treatment and a large increase
of immunoreactivity upon base-induced demethylation. Chemiluminescence
quantitation determined that 94 ± 3% of HA-tagged wt C subunits
are methylated in unsynchronized NIH3T3 cell populations. HA-tagged
mutants in which threonine 304 is substituted with aspartate (T304D),
alanine (T304A), asparagine (T304N), or lysine (T304K), or in which
threonine 301 is substituted with aspartate (T301D), were also highly
methylated, with methylation levels ranging from 75-98% (Figure 3A).
These high levels of methylation indicate that threonines 301 and 304 are not essential for methylation of leucine 309.
Figure 3B shows an analysis of five other carboxy-terminal mutants
altered at leucine 309 or tyrosine 307. Even though substantial L309
protein was immunoprecipitated, L309
was not recognized by 4b7,
indicating that the epitope recognized by 4b7 includes unmethylated
leucine 309. Substitution of tyrosine 307 with glutamic acid (Y307E),
glutamine (Y307Q), or lysine (Y307K) nearly abolished methylation,
indicating that this residue is very important for achieving a wt
methylation level. Substitution of phenylalanine (Y307F) for tyrosine
307 resulted in an intermediate level of methylation (43 ± 18%),
indicating that the tyrosine 307 hydroxyl group plays an important but
not essential role, and that the aromatic ring of this tyrosine is
important. Thus, tyrosine 307 is more important than threonines 301 and
304 for methylation of the C subunit in vivo.
A similar analysis of C subunit active site point mutants is
shown in Figure 3C. The methylation status of these mutants was assayed
because they had previously been shown to bind MT but not substantial
B
subunit (Ogris et al., 1999a
,b
). Although wt C subunit
analyzed in parallel again showed a great increase in 4b7 reactivity
upon base treatment, all four of these catalytically inactive mutants
showed little change. Quantitation indicated that 94 ± 1% of
HA-tagged wt C subunits were methylated, but only 3-13% of the
catalytically inactive mutant C subunits were methylated, demonstrating
that these active site residues are essential for obtaining a high
steady-state level of C subunit methylation. Expression of these
mutants did not affect the methylation status of endogenous,
untagged wt C subunit (data not shown), indicating that these
mutants do not have a general, indirect effect on PP2A methylation.
Figure 4A shows the results of an
in vivo assay, based on incorporation of
3H-labeled methyl groups into C subunit, that was
used to confirm the methylation status of the methylation-deficient
mutants detected by the antibody assay (see MATERIALS AND METHODS). No
protein synthesis occurs during the labeling period of this in vivo
assay, so only methylation of pre-existing C subunits is seen. As
expected, no [3H]C subunit was present in the
control immunoprecipitates from cells expressing vector only (GRE only
lane), whereas HA-tagged wt C subunit, the positive control, was
efficiently methylated (wt lane). In agreement with the
methylation-sensitive antibody assay results, Y307F was methylated at
an intermediate level, but Y307E, Y307Q, and Y307K were essentially
unmethylated. In addition, neither 301stop, a nine-amino acid
C-terminal truncation mutant, nor L309
was detectably methylated
even though a substantial amount of mutant protein was present in the
assay (see immunoblot). Thus, the methyltransferase does
not simply methylate the last residue of C subunit but specifically
recognizes leucine 309.
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Figure 4B shows the results of a similar in vivo labeling analysis in which the four catalytically inactive C subunit mutants along with a wt C subunit control (wt lane) were assayed. All four of the inactive mutants were highly defective in methylation, confirming the results obtained with the antibody assay (Figure 3C).
Unmethylated C Subunit Mutants Bind to Striatin and SG2NA
To analyze the binding of striatin and SG2NA to PP2A mutants, the
ability of striatin and SG2NA antisera to coimmunoprecipitate these
mutants relative to HA-tagged wt C subunit was determined. An
essentially unmethylated catalytically inactive mutant (H59Q), an
unmethylated C-terminal mutant (Y307E), a near-wt methylated mutant
(T304D), an intermediately methylated mutant (Y307F), and a
hypermethylated mutant (T304A) were analyzed along with wt C subunit
(Figure 5A). For both lysates and
immunoprecipitates, the percentage of total C subunit that each
HA-tagged C subunit constitutes was determined. The calculated
percentage for each immunoprecipitate was divided by the calculated
percentage for the corresponding lysate to determine the fold
enrichment of each mutant in immune complexes, which is shown
graphically in Figure 5B. The fold enrichment was used as a measure of
the efficiency of complex formation of various C subunit mutants to
SG2NA and striatin. One caveat from this type of analysis is that the
maximum fold enrichment is limited by the overall expression levels of each mutant, which varies among different cell lines. For example, a
mutant that is expressed at 10% of total PP2A C subunit cannot be
enriched more than 10-fold, whereas a mutant expressed at 2% of total
C subunit could theoretically be enriched 50-fold. Nevertheless, none
of the mutants were enriched to their theoretical maximum level.
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The effects of these mutations on binding to striatin and SG2NA
were dramatically different from those on B
subunit binding. Compared with wt C subunit, Y307E and Y307F showed enhanced binding to
striatin and SG2NA, T304D showed near-wt binding, and T304A showed
near-wt or decreased binding. Not surprisingly, each mutation tended to
have similar effects on binding to striatin and SG2NA. The differences
among various mutants were not simply due to expression levels
of the mutant C subunits, as shown by Y307E and T304A, which were both
expressed at low levels (2 and 3.5%, respectively), but differed
30-fold in their ability to bind SG2NA. Moreover, T304A and T304D,
which were expressed at very different levels (3.5 and 26%,
respectively), showed no difference in their enrichment in striatin
immunoprecipitates. Furthermore, methylation of C subunit is not
required for striatin and SG2NA binding to the A/C heterodimer. In
fact, the unmethylated mutants Y307E and L309
are two of the most
highly enriched in striatin and SG2NA complexes.
Unmethylated C Subunit Mutants Bind to MT but Not to
B
Subunit
Table 2 shows a comparison of the
steady-state methylation levels of the C subunit carboxy-terminal and
active site mutants with their abilities to form complexes containing
the different regulatory subunits. Data on the binding of these mutants
to B
subunit and MT are from published studies (Ogris et
al., 1997
, 1999a
,b
). Several major observations can be made.
First, although C subunit methylation is required for B
subunit
binding, it is not required for binding of striatin, SG2NA, or MT. All
point mutants highly defective in methylation (Y307E, Y307Q, Y307K, H59Q, H118Q, D85N, and R89A) fail to bind B
subunit. The only mutants that still bind B
subunit efficiently are methylated at
medium (Y307F) to high (T304A) levels. These results are consistent with the hypothesis that methylation positively regulates B
subunit association. MT, on the other hand, binds to all of these mutants, indicating that its association with the A/C heterodimer does not
require methylation. The second major observation from Table 2 is that
some mutations (T301D, T304D, T304N, and T304K) impair B binding
without having a dramatic effect on leucine 309 methylation. Although
all four of these mutants are methylated at a near-wt level, they all
are partially (T301D) or completely (T304D, T304N, and T304K) defective
in B
subunit binding. Thus, B
subunit binding is not important
for maintaining a high methylation level on C subunit.
|
Demethylation of C Subunit by a PME-1 Results in Dissociation of
B
Subunit but Not MT or A
Subunit
We recently reported the cloning and bacterial expression of
PME-1, a PP2A methylesterase (Ogris et al., 1999a
). We used
PME-1 to demethylate C subunit in cell lysates and assayed by
coimmunoprecipitation whether this treatment affected the amount of C
subunit found in complex with B
subunit, MT, or A
subunit. The
top panel of Figure 6 shows that
treatment of lysates from cell lines expressing either HA-tagged A
subunit (Asub), HA-tagged B
subunit (B sub), or MT with PME-1
resulted in substantial demethylation of the C subunit in each of these
lysates. Quantitation of percentage of methylation from four
independent experiments was performed on a set of parallel
immunoblots (not shown) using the method described for
immunoprecipitates in the legend to Figure 3. This analysis determined
that the methylation level of C subunit in PME-1-treated lysates from
cells expressing HA-tagged A
or B
subunit or MT had been reduced
to 21 ± 3, 20 ± 11, or 22 ± 4%, respectively. The
bottom panel of this figure shows that demethylation of the C subunit
did not greatly affect the amount of C subunit coimmunoprecipitated
with A
subunit or MT, but it dramatically reduced (
5-fold) the
amount of C subunit bound to B
subunit. This result provides further
evidence that the methylation state of the C subunit affects B
subunit, but not MT, binding and also shows that A/C heterodimer
formation is not greatly affected by the level of C subunit
methylation. Moreover, these data show that PME-1 demethylates A/C/B
complexes and induces dissociation of B
from A/C, suggesting that it
may perform a similar function in vivo.
|
Striatin and SG2NA, but Not B
Subunit, Can Bind Unmethylated C
Subunit in Cells with Reduced Methylation Levels
Typically, PP2A is at least 94% methylated in NIH3T3 cells
(Figure 3). We next reduced the level of PP2A methylation in vivo and
examined the effect on association of cellular regulatory subunits.
Initial attempts to overexpress PME-1 were unable to decrease PP2A C
subunit methylation (Du and Pallas, unpublished data). Okadaic acid
treatment of cells has been reported to cause demethylation of PP2A
(Favre et al., 1997
), but prolonged treatment can cause
apoptosis (Yan et al., 1997
). Adenosine dialdehyde (AdOx), an inhibitor of S-adenosyl homocysteine hydrolase (Bartel
and Borchardt, 1984
), increases the cellular concentration of the S-adenosyl methionine (AdoMet)-dependent methylation
byproduct, S-adenosyl homocysteine, thus reducing
AdoMet-dependent protein methylation. Because PP2A is methylated by an
AdoMet-dependent methyltransferase, AdOx treatment lowers PP2A
methylation. We used sequential treatments with okadaic acid and AdOx
to decrease PP2A methylation levels to ~25%.
Analysis of PP2A complexes in control cells and in treated cells in
which C subunit methylation was reduced showed no consistent decrease
in the amount of C subunit coimmunoprecipitated with B
subunit,
striatin, or SG2NA (Figure 7A). However,
striatin and SG2NA bound to both methylated and unmethylated C subunits in the treated cells, whereas B
subunit associated exclusively with
methylated C subunits (Figure 7B), suggesting that B
subunit preferentially binds to the remaining population of methylated C
subunits in the treated cells.
|
| |
DISCUSSION |
|---|
|
|
|---|
It has been known for several years that the PP2A C subunit
is methylated at its carboxy terminus, but a biological function for
this posttranslational modification has not yet been directly demonstrated. Here, we present four independent lines of evidence to
show that methylation is essential for the binding of B
subunit to
the A/C heterodimer but not for association of MT, striatin, and SG2NA.
First, deletion of leucine 309 abolished B
subunit binding, whereas
it enhanced binding to striatin and SG2NA and had no effect on MT
association. Second, loss of C subunit methylation by mutation of other
residues had effects similar to deletion of leucine 309. Third,
demethylation of C subunit in vitro using purified PME-1 disrupted
A/C/B
complexes but not A/C/MT complexes. Finally,
immunoprecipitations prepared from cells with reduced C subunit
methylation showed that SG2NA and striatin can associate with
unmethylated C subunit, whereas B
subunits complexed exclusively with the remaining population of methylated C subunits. These findings
provide evidence that reversible protein methylation at a single
residue, much like phosphorylation, is capable of regulating
protein-protein interactions and enzyme activity and demonstrate the
first known function for PP2A methylation. In addition, the results of
this study indicate the importance of specific C subunit
carboxy-terminal residues and, more surprisingly, active site residues
for efficient methylation. Two models consistent with these
findings are either that the active site and the carboxy terminus are
needed for recognition by methyltransferase and/or methylesterase
enzymes or that mutations induce conformational changes elsewhere in
PP2A that affect the interaction with these enzymes.
The complete loss of B
subunit binding to L309
(as well as
other C subunit mutants) cannot be due to competition between B
and
MT. MT is expressed only at ~10% the level of PP2A in these cells
(Haehnel and Pallas, unpublished data; Ulug et al., 1992
), and overexpression of 10 times as much MT via an adenovirus does not
cause complete dissociation of B
subunit (Green and Pallas, unpublished). In addition, all MT in these cells is already bound to
PP2A (Pallas et al., 1989
); therefore, no excess MT is
available to compete off additional B
subunit. Our findings with
L309
confirm that of Bryant et al. (1999)
, who showed
that a single mutant (L309A) did not bind B
subunit and would not
incorporate methyl groups in vitro. We have also shown that leucine 309 is not important for several other viral and cellular PP2A regulatory subunits. Because the only mutant in the study of Bryant et
al. changed leucine 309, they could not distinguish whether B
subunit binding was affected by loss of methylation, mutation of the
leucine residue, or both. Our analysis of multiple unmethylated mutants that retained leucine 309 together with several biochemical approaches have clearly demonstrated that methylation is required for binding of
B
subunit.
We have also developed a methylation-sensitive antibody assay
that has the important advantage of measuring the steady-state methylation level of C subunit in vivo. Similar assays utilizing methylation-sensitive polyclonal antibodies have been used previously as a means of evaluating in vivo PP2A methylation levels (Favre et al., 1994
, 1997
; Turowski et al., 1995
), but
here we have used milder conditions and a chemilumimager to obtain
quantitative data on methylation. The immunoprecipitated C subunit that
was analyzed typically consisted of 15-20% of the total cellular C subunit, raising the possibility that it was not representative of the
total pool of expressed protein. However, most HA-tagged C subunits
were also analyzed directly in lysates for steady-state methylation
level and gave similar results in every case (Yu, Du, Moreno, Green,
and Pallas, unpublished data), indicating that the
immunoprecipitation data are representative.
Mutational analysis of PP2A C subunit showed that loss of
methylation induced by individual substitution of any one of five separate residues resulted in loss of B
subunit binding but not of
MT, striatin, or SG2NA binding. In fact, the binding characteristics of
some of the mutants are consistent with the possibility that loss of C
subunit methylation might increase striatin and SG2NA binding to the
A/C heterodimer. Mutations in completely different regions of the C
subunit protein primary sequence (positions 59, 85, 89, 118, and 307)
were able to simultaneously affect methylation and B
subunit
binding, indicating a strong connection between the two events.
Although two of the active site mutants (H59Q and H118Q) form a stable
complex with PME-1 (Ogris et al., 1999a
), the other two
active site mutants do not, excluding the possibility that loss of B
subunit binding is due to stable PME-1 association. The data also show
that the dramatic loss of methylation seen with several mutants was not
an indirect effect produced by loss of B
subunit binding. Four
separate C subunit mutants (T301D, T304D, T304N, and T304K) had very
low or no B
subunit binding and yet retained 80-89% of the wt
level of methylation. Thus, B
subunit binding is not necessary to
maintain high methylation levels of C subunit. Taken together, these
results strongly support the hypothesis that C subunit methylation
positively regulates B
subunit binding to the A/C heterodimer.
The B subunit antibody used to detect B subunit associating with
the various mutant C subunits (Ogris et al., 1997
, 1999a
,b
) was raised against a large portion of the B
subunit containing extensive sequence identity with other B subunit isoforms (
,
,
and
). Two-dimensional gel immunoblot analysis indicates
that this antibody recognizes multiple isoforms of B subunit (Huehnel, Park, and Pallas, unpublished data). The fact that no B subunit could be detected by this antibody in immunoprecipitates of many unmethylated C subunit mutants (Ogris et al., 1997
, 1999b
)
suggests that B subunit isoforms other than B
also probably require
methylation for efficient association with the A/C heterodimer.
We have recently obtained evidence showing that C subunit methylation
is important for the efficient association of both B and B' subunits in
yeast (Wei et al., in press). We identified the major PP2A
methyltransferase in S. cerevisiae as Ppm1p and found that
deletion of the PPM1 gene resulted in almost complete loss
of C subunit (Pph21p/Pph22p) methylation. Loss of methylation resulted
in greatly decreased association of the B (Cdc55p) and B' (Rts1p)
subunits and, to a lesser degree, of A subunit (Tpd3p). Moreover, cells
deleted for PPM1 exhibited nocodazole sensitivity, a known
phenotype of CDC55 disruption, indicating that loss of methylation can affect PP2A function. Two other groups have published concurrent studies describing findings similar to ours in both yeast
(Wu et al., 2000
) and mammalian systems (Tolstykh et
al., 2000
). Wu et al. also identified Ppm1p as the
major methyltransferase, found that methylation is important for
association of Tpd3p and Cdc55p, and showed that deletion of
PPM1 causes nocodazole sensitivity (Wu et al.,
2000
). However, in contrast to our data (Wei et al., in
press), they observed a small amount of residual binding of Cdc55p in
the absence of methylation, which may be the result of differences in
experimental conditions. Consistent with our data demonstrating the
importance of C subunit methylation for B
association with A/C
heterodimers in mammalian cells, Tolstykh et al. showed that
methylation of A/C heterodimers enhanced their association with B
subunit in vitro (Tolstykh et al., 2000
). In addition, they
presented data suggesting that C subunit methylation increases the
affinity of the A/C heterodimer for B' subunits in mammalian cells.
Finally, the only other regulatory subunit of PP2A for which there is
any evidence suggesting a possible effect of methylation is alpha 4, which unlike the regulatory subunits discussed above, binds to C
subunit but not A subunit. Alpha 4 has been recently reported to have
increased binding to a C subunit mutant altered at both Y307 and L309
(Chung et al., 1999
), suggesting that methylation is not
required for alpha 4 association with C subunit and actually may
inhibit it. Consistent with this possibility, Wu et al. (Wu
et al., 2000
) found that association of C subunit with the
yeast homolog of alpha 4 (Tap42) is enhanced ~50% by disruption of
PPM1.
Addition of the PP2A methylesterase, PME-1, to cell lysates
caused C subunit demethylation and dissociation of C subunit from the
B
subunit-containing complexes but not from MT complexes or from
A
subunit. Thus, PME-1 demethylates A/C/B
complexes and induces
dissociation of B
from A/C in vitro, suggesting that it may perform
a similar function in vivo. Although it is possible that the
exogenously added PME-1 may have physically competed off the B
subunit from the A/C heterodimer, this seems unlikely because, unlike
B
subunit, PME-1 does not have high enough affinity for wt C
subunit to stably complex with it (Ogris et al., 1999a
). Furthermore, immunoblotting showed that the amount of
added PME-1 represented as little as eightfold more than was present in
the untreated lysates. Moreover, addition of inactive PME-1 at a
concentration 64-fold above the endogenous level neither demethylated
the C subunit nor displaced B
subunit (McQuoid and Pallas,
unpublished data). Because A/C/B
heterotrimers exist in a dynamic
equilibrium with A/C heterodimers, it is possible that, as B
subunit
naturally dissociates from the A/C heterodimer, exogenously added PME-1 could demethylate the A/C heterodimer, decreasing its affinity for B
and preventing reassociation. This hypothesis would be consistent with
the findings of Tolstykh et al. (Tolstykh et al., 2000
), who showed that A/C/B
complexes are demethylated by PME-1 at
a much slower rate than A/C heterodimers.
Whereas a reduction in C subunit steady-state methylation in vivo
resulted in a decrease in methylation of C subunits associated with
striatin and SG2NA, B
subunit-associated C subunits in the same cell
remained essentially 100% methylated. This suggests that B
subunit
has a higher affinity than striatin and SG2NA for methylated C subunits
and that methylation is essential for B
subunit but not striatin and
SG2NA binding to the A/C heterodimer. Because a substantial decrease in
B
subunit association with A/C heterodimer was not observed in the
okadaic acid/AdOx-treated NIH3T3 cells, it can be inferred that B
subunit associates with less than 26% of C subunit in these cells. It
is possible that cells regulate B
subunit association with the A/C
heterodimer simply by reducing C subunit methylation in a particular
cellular compartment below the level of associated B
subunit.
Alternatively, there may be a mechanism for specifically demethylating
B
subunit-associated C subunits by PME-1.
Earlier studies have shown that synthetic C subunit
carboxy-terminal peptides functioned neither as substrates nor
inhibitors of the PP2A methyltransferase (Xie and Clarke, 1994
) and
PP2A methylesterase (Lee et al., 1996
), suggesting that
carboxy-terminal residues might not be critical for interaction with
these enzymes. The observations that L309
, 301stop, and several
tyrosine 307 mutants abrogated methylation provide the first direct
evidence that C subunit carboxy-terminal residues are important for
recognition of PP2A by the methyltransferase and/or methylesterase
enzymes in vivo. Taken together, these data suggest that proper
recognition by the methyltransferase and/or methylesterase requires
both C subunit carboxy-terminal residues and additional structure.
Four individual point mutations in the active site nearly
abolished the methylation competence of the C subunit in a
cis manner, suggesting that residues or coordinated metals
in or near the active site may be part of the additional structure
needed for recognition by methyltransferase and/or methylesterase
enzymes. This hypothesis is supported by the recent finding that two of these mutants formed stable complexes with PME-1 that could be disrupted by PP2A inhibitors such as okadaic acid (Ogris et
al., 1999a
). Okadaic acid and microcystin-LR, whose binding sites
on PP2A are thought to overlap (MacKintosh et al., 1990
),
may thus inhibit PP2A methylation and/or demethylation (Lee and Stock, 1993
; Floer and Stock, 1994
; Li and Damuni, 1994
; Lee et
al., 1996
) because they overlap in binding with the
methyltransferase and methylesterase enzymes. Microcystin has been
shown to interact with multiple residues in the active site of the
highly related phosphatase, PP1 (Goldberg et al., 1995
),
including a PP1 residue corresponding to one of the PP2A residues
mutated in this study (arginine 89). An alternative hypothesis to a
direct interaction between the active site and the methyltransferase
and methylesterase enzymes is that mutations and inhibitors induce
conformational changes elsewhere in PP2A that affect the interaction
with these enzymes.
Protein phosphatase V, protein phosphatase G, and protein
phosphatase X, several phosphatases >50% identical to PP2A, have the
same three carboxy-terminal amino acids as PP2A, raising the possibility that the PP2A methyltransferase and methylesterase enzymes
may also regulate these phosphatases. Whereas the methylation status of
protein phosphatase V and protein phosphatase G has not been reported,
protein phosphatase X is methylated on its C terminus (Kloeker et
al., 1997
). These phosphatases share two residues that have been
shown in this study to be essential for PP2A methylation
a tyrosine
analogous to PP2A tyrosine 307 and a carboxy-terminal leucine. Because
these phosphatases share >50% identity with PP2A, including the
active site residues mutated in this study, they may contain the other
structural information necessary for interaction with the PP2A
methyltransferase and/or methylesterase enzymes.
The observation that the unmethylated Y307E mutant was
greatly enriched in striatin and SG2NA complexes suggests that
phosphorylation of tyrosine 307 may enhance the affinity of C subunit
for these regulatory subunits. In contrast, phosphorylation of this
residue may inhibit B
subunit binding (Ogris et al.,
1997
), perhaps indirectly by reducing methylation. Because the T304D
mutant is highly methylated, it is unlikely that phosphorylation of
threonine 304 regulates methylation. However, since this mutant cannot
bind B
subunit (Ogris et al., 1997
), phosphorylation of
this residue might directly regulate B
association. Our previous
data suggests that MT binding to the A/C heterodimer would be
unaffected by phosphorylation of threonine 304 or tyrosine 307 (Ogris
et al., 1997
). The current results indicate that MT binding
to PP2A is also independent of C subunit methylation. These two results
may have implications for how MT may circumvent normal cellular
regulation of PP2A.
On first consideration, the fact that Y307F has a twofold
decrease in methylation compared with wt C subunit and yet binds B
subunit as well or better than wt is puzzling. In the context of the
other results in this study, we would suggest that this mutation
simultaneously reduces recognition by a PP2A methyltransferase while
strengthening B
subunit binding in an independent manner. This
result, in combination with the requirement for leucine 309 methylation
for B
subunit binding, supports a model in which hydrophobic
interactions between the carboxy terminus of C subunit and B
subunit
play a critical role in stabilizing the A/B/C heterotrimer. Also
consistent with this model is the fact that the T304A mutant exhibits
enhanced B
subunit binding. Alternatively, methylation of the C
subunit carboxy terminus could induce a conformational change that
affects its interaction with different regulatory proteins. Structural
studies will be necessary to resolve these possibilities and to help
elucidate the mechanisms by which multiple signals and events involving
the C subunit carboxy terminus affect PP2A activity.
| |
ACKNOWLEDGMENTS |
|---|
We thank Carroll Weaver, Danielle McKelton, Danita Ashby, and Marie Kozel for excellent technical assistance, Brian Hemmings for the C subunit cDNA, John White for the pGRE 5-2 vector, and Anita Corbett, Gerald Shadel, Xiaodong Cheng, Shirish Shenolikar, Cori Beychok, and Tatiana Mendez for critical reading of the manuscript. Under agreements between Upstate Biotechnology Inc. and Emory University and between Calbiochem and Emory University, David Pallas is entitled to a share of sales royalty received by the University from these companies. In addition, this same author serves as a consultant to Upstate Biotechnology Inc. The terms of this arrangement have been reviewed and approved by Emory University in accordance with its conflict of interest policies.
| |
FOOTNOTES |
|---|
* These authors contributed equally to this work.
Portions of this work were performed while these
investigators were in the Division of Cellular and Molecular Biology,
Dana-Farber Cancer Institute, and Department of Pathology, Harvard
Medical School, Boston, MA.
E.O. was supported by an Erwin Schrödinger
Fellowship from Austrian Fonds zur Förderung der
Wissenschaftlichen Forschung. Present address: Institute of Molecular
Biology, Vienna Biocenter, University of Vienna, A-1030 Vienna, Austria.
§ Present address: Oklahoma University Health Science Center, Oklahoma City, OK 73106.
Corresponding author. E-mail address:
dpallas{at}emory.edu.
| |
ABBREVIATIONS |
|---|
Abbreviations used: AdOx, adenosine dialdehyde; AdoMet, S-adenosyl methionine; C subunit, catalytic subunit; HA, hemagglutinin; MT, middle tumor antigen; PME-1, protein phosphatase methylesterase-1; PP2A, protein phosphatase 2A; wt, wild-type.
| |
REFERENCES |
|---|
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