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Vol. 12, Issue 12, 3919-3932, December 2001
Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado 80309-0347
Submitted June 20, 2001; Revised August 15, 2001; Accepted September 19, 2001| |
ABSTRACT |
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The kinesin superfamily of microtubule motor proteins is important
in many cellular processes, including mitosis and meiosis, vesicle
transport, and the establishment and maintenance of cell polarity. We
have characterized two related kinesins in fission yeast,
klp5+ and
klp6+, that are amino-terminal motors
of the KIP3 subfamily. Analysis of null mutants demonstrates that
neither klp5+ nor
klp6+, individually or together, is
essential for vegetative growth, although these mutants have altered
microtubule behavior. klp5
and klp6
are resistant to high concentrations of the microtubule poison
thiabendazole and have abnormally long cytoplasmic microtubules that
can curl around the ends of the cell. This phenotype is greatly enhanced in the cell cycle mutant cdc25-22, leading to
a bent, asymmetric cell morphology as cells elongate during cell cycle arrest. Klp5p-GFP and Klp6p-GFP both localize to cytoplasmic
microtubules throughout the cell cycle and to spindles in mitosis, but
their localizations are not interdependent. During the meiotic phase of
the life cycle, both of these kinesins are essential. Spore viability
is low in homozygous crosses of either null mutant. Heterozygous
crosses of klp5
with klp6
have an
intermediate viability, suggesting cooperation between these proteins
in meiosis.
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INTRODUCTION |
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The microtubule cytoskeleton is required for a variety of cellular
functions in eukaryotes, including the organization of cellular
organelles, the establishment and maintenance of cell polarity, and
chromosome movement in mitosis and meiosis. Microtubule dynamics and
organization are controlled in part by proteins that associate with
polymerized tubulin: microtubule-associated proteins and the
motor proteins kinesin and dynein (reviewed in Hunter and Wordeman,
2000
). The kinesin motor proteins constitute a superfamily of related
molecules defined by a conserved motor domain of ~320 amino acids
that displays ATPase activity and microtubule binding; together these
produce motility. Kinesins are classified into subfamilies based on
motor domain sequence similarities, whereas the sequences outside the
motor domain often lack significant similarity, even within a subfamily
(reviewed in Goldstein and Philp, 1999
).
The fission yeast, S. pombe, is an attractive system for the
study of kinesin function, given its relatively small complement of
motors together with its suitability for detailed experimentation, e.g., one can efficiently manipulate its genes through molecular genetics. The study of motor enzymes in fission yeast is further facilitated by the elaborate and dynamic microtubule cytoskeleton found
in these cells, which is readily visible by light microscopy (reviewed
by Hagan, 1998
). Interphase cells have an extensive array of
cytoplasmic microtubules organized as 3 to 8 bundles that run
essentially parallel to the long axis of the cell. These microtubules
appear to be organized with their plus ends at the cell tips, while the
minus ends congregate in a small region of interdigitation around the
nucleus, which lies at the center of the cell (Drummond and Cross,
2000
; Tran et al., 2001
; reviewed by Hagan, 1998
). Moreover,
these microtubules undergo dynamic instability with parameters similar
to those described for metazoan systems (Drummond and Cross, 2000
; Tran
et al., 2001
). Unlike in budding yeast, these microtubules
are essential for organizing vesicular organelles (Ayscough
et al., 1993
; Yaffe et al.,
1996
; Hagan and Yanagida, 1997
) and maintaining cell polarity (reviewed in Mata and Nurse, 1998
; Chang, 2001
). The most dramatic change in
microtubule organization occurs as the cells enter mitosis; cytoplasmic
microtubules are completely disassembled and a mitotic spindle forms
within the nucleus. On completion of mitosis, interphase microtubules
reappear, first as a "postanaphase array" around the new septum in
G1 and then as the paraxial bundles described above.
The Schizosaccharomyces pombe genome encodes nine
kinesin-related genes from seven subfamilies and one cytoplasmic dynein (Hagan and Yanagida, 1990
; Pidoux et al., 1996
; Yamamoto
et al., 1999
; Brazer et al., 2000
; Browning
et al., 2000
; Troxell et al., 2001
; pombe genome
project). Among the kinesin subfamilies found in fission yeast, three
have direct effects on microtubule dynamics and higher order
microtubule organization (Goldstein and Philp, 1999
). S. pombe expresses two members of the KAR3 subfamily,
pkl1+ and
klp2+. These promote microtubule
disassembly and, together with dynein, are essential for meiosis
(Troxell et al., 2001
). S. pombe also expresses
tea2+, a member of the KIP2 subfamily,
which promotes microtubule growth (Cottingham and Hoyt, 1997
). Deletion
of tea2+ leads to unusually short
microtubules and the mislocalization of the tip-specific marker Tea1p
(Browning et al., 2000
). This compromises the polarity of
tea2
cells, leading to their "T" shape. In budding
yeast, the activity of Kip2p is antagonized by two different
microtubule-destabilizing kinesins, Kar3p and Kip3p (Cottingham and
Hoyt, 1997
; Huyett et al., 1998
; Miller et al.,
1998
).
Here, we describe two fission yeast kinesins, klp5+ and klp6+, that are both homologs to KIP3 kinesin in Saccharomyces cerevisiae. Our data demonstrate that these fission yeast kinesins influence the behavior of microtubules and cell morphology by fostering microtubule disassembly. They are also essential for meiosis.
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MATERIALS AND METHODS |
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Strains and Cell Culture
All strains used in this study are listed in Table
1. The haploid strains 99 and 100 were
generally used as wild type controls. Cell culture and genetic
manipulations were performed with the use of standard techniques
(Moreno et al., 1991
). Growth of klp
mutants
was assayed on solid and liquid media over the range of temperatures
commonly used to identify both cold and high temperature sensitivity in
fission yeast (20, 25, 32, and 36°C). Growth rates were determined
from cultures in yeast extract plus supplements (YES) medium during log
phase with the use of the OD595 at 20-min intervals. Temperature-sensitive mutants were incubated at 25°C for
permissive temperature for growth, and at 36°C for restrictive growth. Cell transformations were carried out with the use of lithium
acetate/sorbitol (Moreno et al., 1991
) or polyethylene glycol (Elble, 1992
)-based protocols. Strains were crossed on malt
extract agar plates to induce meiosis, and the resultant spores were
plated on YES medium to determine viability.
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klp5+ and klp6+ Intron Mapping
The presence of small introns at the 5' end of both
klp5+ and
klp6+ was predicted from the DNA sequence
provided by the S. pombe genome project and confirmed
experimentally. The klp5+ intron was
mapped by amplifying a cDNA clone from a S. pombe cDNA
library (a generous gift of Drs. C. Norbury and B. Edgar, Imperial
Cancer Research Fund, London, England) by polymerase chain
reaction (PCR) with the use of primers KLP5-4
(gactaagaaatgtaacttggcaaatg) and KLP5A (ctgttgctgagtagcag). The
klp6+ intron was confirmed by reverse
transcriptase (RT) followed by PCR then a subsequent reaction of nested
PCR, followed by DNA sequencing. RT-PCR was performed with reverse
transcriptase and DNA polymerase following the manufacturer's
specifications (Promega, Madison, WI). The substrate consisted of the
poly(A+) fraction of RNA isolated from wild type
cells with the use of standard methods (Sambrook and Russell, 2001
).
Parallel reactions were carried out with single primers, no added RNA,
and no added RT, to control for primer artifacts or contaminating
genomic DNA. RT-PCR first used primers KLP6-13
(cgatactgctatgaaagaagggtc) and KLP6-9 (gcaaacacagtggcattatatcc),
followed with primers KLP6-13 and KLP6-14 (gatcaaatgcatatcgaacatc).
Computational Analysis of Sequences
Database searches were done with the BLAST algorithm (Altschul
et al., 1997
). Protein sequences were aligned with Clustal W
(Thompson et al., 1994
) then analyzed with the phylogenetic program PAUP, version 4.0, assuming maximum parsimony and
with the use of a heuristic search method with stepwise addition
(Sinauer Associates, Sunderland, MA). Coiled-coils predictions
were done with the COILS program with the use of both MTK and MTIDK
matrices, with and without the weighting option (Lupas et
al., 1991
). The ProPram tools
(www.expasy.ch/cgi-bin./protparam) were used to determine molecular
weights and theoretical isoelectric points (pI).
Construction of Null Strains
The klp5+ and
klp6+ null mutant strains were constructed
with the use of a single-step gene replacement protocol and the
selectable markers his3+ (Ohi et
al., 1996
) or ura4+ (Grimm et
al., 1988
) in the appropriate auxotrophic backgrounds (Table 1).
The klp5-null allele was constructed with the use of long flanking regions of klp5+ to target integration. The 5'-flanking 575 base pairs were PCR amplified with primers KLP-L1 (atagcgctcactagtcctct) and KLP-L2 (gccagtgggatttgtagctaagcttagaaaagagcgagaaacgcgt), which includes sequence overlapping the 5' end of ura4+. The 3'-flanking 520 base pairs were PCR amplified with primers KLP-L3 (gcgtttgttttcctaggcgaagctcacagcttgatcaactgctg), which contains sequence overlapping the 3'-end of ura4+, and KLP-L4 (tgtacattggaggtggcaga). The resulting PCR products were then used as long primers for a second PCR reaction, with the ura4+ gene as the substrate and the resulting product used in transformations.
The klp6-null allele was constructed with the use of long flanking PCR primers directly. The nutritional marker genes were PCR amplified with primers containing 75 bases identical to the 5'- and 3'-flanking regions klp6+. The primers were KLP6-URA4-5' (c a a g c t t c c c a t a c t t g t g t t c t t c t t a a t a g c t t c a c a c a a c t a a a a c a a a t t c a t t c c t a g a a t c a g t a t t a c g a t a c c c a c t g g c t a t a t g t a t g c a t t t g) with KLP6-URA4-3' (g a a g a a a a g c c a a t g a g g a g t t g a t g t t g t c c t t c c a a a a a a a a t t a t a c c a a c t a t t t g a g t g a a a a c c g a t c t c g t t g g t t t c c a a c a c c a a t g t t t a t a a c c a a g) and KLP6-HIS3-5' (c a a g c t t c c c a t a c t t g t g t t c t t c t t a a t a g c t t c a c a c a a c t a a a a c a a a t t c a t t c c t a g a a t c a g t a t t a c g a t a c t g c t t t g g a a a t g a a a g a c a t a t g g a g c) and KLP6-HIS3'3 (g a a g a a a a g c c a a t g a g g a g t t g a t g t t g t c c t t c c a a a a a a a a t t a t a c c a a c t a t t t g a g t g a a a a c c g a t c t c g t t g g c a c g g g t t a t a a t c c t t t a a a t t a g c g).
Diploid cells constructed from strains 99 and 100 (Table 1) were transformed with the PCR products, and Ura+ or His+ transformants were selected for growth on defined medium. Tetrad analysis showed that all four colonies in each tetrad were viable, whereas the marker genes segregated 2:2, indicating a single integration in a nonessential locus.
Homologous integration at the klp5+ locus was confirmed by PCR with the use of primers KLP5-1 (gactcaccaacattcatcctcaac) with URA4-1 (caagatagaatggatgtttgaaattaaacg) or URA4-E (catgctcctacaacattaccac). Homologous integration at the klp6+ locus was confirmed by PCR with the use of primers KLP6-1 (cgactatggttcatagatacatggatatg) and HIS3-3 (ctaattgcgcttgcattcc) or URA4-E.
The klp5
, klp6
, and klp5
klp6
double mutants are collectively referred to as
"klp
" when either the same experiment was done with
all three strains or the same general conclusion is being drawn from
experiments done with all three strains.
Construction of GFP-tagged Strains
A plasmid vector was constructed containing a
[Glycine-Alanine]2 spacer, three tandem copies
of the Pk1 epitope (Southern et al., 1991
), the green
fluorescent protein (GFP) (F64L, S65T allele) (Cormack et
al., 1996
), the nmt1+ terminator
sequence (Maundrell, 1993
), and the ura4+
gene. A DNA molecule containing this construction of
(GA)2-(Pk1)3-GFP-ura4+
was PCR amplified with the use of a 5' primer containing 75 bases identical to the 3' end of each respective Klp open-reading frame and
33 bases, in-frame, containing the Glycine-Alanine spacer and the
[Pk1]3 sequence. The 3' primers consisted of 81 bases identical to the 3' end of each klp, starting six base pairs 3' of the stop codon, and 25 bases corresponding to the 3' end of the
ura4+ gene. The
Klp-Pk1-GFP-ura4+ PCR product was used to
transform diploids and Ura+ integrants
identified. Homologous integration was confirmed by PCR with primers to
the Klp sequence, GFP, and ura4+. The
Klp-Pk1-GFP region from the selected integrant strains were PCR
amplified and sequenced to confirm in-frame integration and to identify
any PCR-generated sequence errors in the constructs. One missense
mutation was found in the GFP portion of Klp5pGFP (agt-ggt; S2G) and
one in the GFP portion of Klp6pGFP (ctt-ctc; L40P), but neither of
these changes had a noticeable effect of the fluorescence properties of
the GFP fusions.
The klp5-GFP-ura4+ fragment was amplified with primers 5'KLP5GFP (c t t c a t c t t t c a a a t c c a g c t a a c a t t a t t a g g a a a t c t t t a a g c a t g g c t g a a a a c g a a g a a g a g a a a g c c a c c g g a g g a g a g c t c a t g g g t a t t c c t a a c c c t t t g) and 3'KLP5GFP (c a t a t c a t c a a g c t t a t c c g t t t t t t t t t t t t a a a t a t a c c c a a c a g g a t a t t t a g a g g a t t c g t a t t t g a a t a t a c g g g t t c c a a c a c c a a t g t t t a t a a c c a a g). The klp6-GFP-ura4+ fragment was amplified with primers 5'KLP6GFP (c a a c c a g t a c g c c g t a t a t c g c t t g t t t c a c a a c c t t t a c a a a a a a c t g g c g g g a c t g a g a a t a c t c c t a a t g c t g g a g g a g a g c t c a t g g g t a t t c c t a a c c c t t t g) and 3'KLP6GFP (g a a g a a a a g c c a a t g a g g a g t t g a t g t t g t c c t t c c a a a a a a a a t t a t a c c a a c t a t t t g a g t g a a a a c c g a t c t c g t t g g g t t c c a a c a c c a a t g t t t a t a a c c a a g). The italicized sequences are from the klps, and the remaining are from Gly-Ala/Pk1 (5') or ura4+ (3') sequence. The klp5-GFP integration was confirmed with primers KLP5-1 (gactcaccaacattcatcctcaac) with GFP-HVEM3 (gtacataaccttcgggcatg) and KLP5-L4 (gtacattggaggtggcagac) with URA4-E. The klp6-GFP integration was confirmed with primers KLP6-3 (ctcattcttccaaatggccaac) with GFP-HVEM3 and KLP6-1 with URA4-E.
Microscopy
Cells were grown to mid log phase (1-3 × 105cells/ml) for microscopy. Experiments with
GFP-tagged genes were generally done at 25°C, and others were done at
the temperatures noted. Fixed cells were prepared for tubulin and DNA
staining with the use of a double aldehyde method (Hagan and Hyams,
1988
), and antibodies were applied as previously described (West
et al., 1998
). DNA staining was also done with cells fixed
by adding 1/10 volume of cell culture to methanol at
20°C for 2-15
min. Cells were collected by centrifugation, resuspended in
phosphate-buffered saline (pH 7.4) containing 1 µg/ml
4',6-diamino-2-phenylindole (DAPI) (Sigma, St. Louis, MO) and mounted
on glass slides.
Live cells were analyzed by visualizing microtubules with
GFP-
-tubulin, Klp proteins with their GFP fusions, and DNA with Hoescht 33342 (Sigma). The GFP-
-tubulin plasmid pDQ105 (Ding et al., 1998
) was transformed into cells and the resultant
strains grown in defined medium (Moreno et al., 1991
)
containing 5 µg/ml thiamine (Sigma) to limit levels of expression
(Maundrell, 1993
) of the GFP-
-tubulin. Cells were collected by
centrifugation (5-10 ml) at 3000 rpm for 3 min in a Beckman Coulter
CS-6 centrifuge, and resuspended in 5 ml of YES, pH 7.5, containing 2 µg/ml Hoescht 33342 for ~30 min. Cells were then mounted on glass
coverslips, and images were collected on a Zeiss Axiophot2 fluorescence
microscope with a 100× Plan-APO objective lens (numerical aperture
1.4). Images were captured with a Cooke SensiCam charge-coupled device camera and processed with the use of the SlideBook software package (Intelligent Imaging Innovations, Denver, CO) as follows. Generally, 6 to 12 focal planes spaced at 200- or 300-nm intervals along the Z-axis
were collected, with 2 × 2 binning (voxel size 67 nm), with the
use of exposure times of ~300 ms in the DAPI channel (Hoescht33342 or
DAPI) and 500-1000 ms in the fluorescein isothiocyanate channel (GFP)
per focal plane. The images were deconvolved with the use of either a
No Neighbor (short Z-series) or Nearest Neighbor (long Z-series)
algorithm, with a subtraction factor of 0.6-0.9. A two-dimensional
image was then rendered with the use of an orthographic projection of
pixel maxima along lines parallel to the optical axis. The resulting
image was prepared as figures with the use of CorelDraw (Ottawa, Ont).
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RESULTS |
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klp5+, klp6+, and KIP3 Constitute a Kinesin Subfamily
We have characterized two of the nine kinesins of fission yeast,
designated klp5+ (kinesin-like protein)
(accession no. Z97211; right arm of chromosome 2, centromere proximal)
and klp6+ (accession no. ALO23587; left
arm of chromosome 2, telomere proximal). Several different sequence
alignment algorithms (see MATERIALS AND METHODS) indicated that Klp5p
and Klp6p are more closely related to each other than to any other
proteins, and each is equally similar to the S. cerevisiae
motor KIP3. For example, an alignment of Klp5p, Klp6p, Kip3p
and several other kinesins with the use of the phylogenetic program
PAUP (version 4.0), groups klp5+ and
klp6+ together with KIP3 but
separates them from other kinesins (Figure 1A). Although these two kinesins are not
genetically linked, they are physically linked on the same chromosome
and contain short introns that are identically placed at their 5' ends,
as confirmed by PCR and DNA sequencing (see MATERIALS AND METHODS). The
klp5+ intron splits the 11th codon
(g/gttagt... aaatag/tc) and is 55 base pairs in length.
The klp6+ intron also splits the 11th
codon (g/gtaaga... atcaag/tt) and is 39 base pairs in
length.
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Sequence analyses of the predicted proteins identified distinguishing motifs and generated a models their domain structures (Figure 1B). Klp5p is predicted to contain 883 amino acids and a molecular mass of 99 kDa, whereas Klp6p is 784 amino acids (aa) with a predicted molecular mass of 88 kDa. As with many other kinesins, the similarity seen is largely confined to ~320 amino acids of the motor domain. The motor domains of Klp5p and Klp6p are 66% identical/76% similar, whereas those of both Klp5p and Klp6p are 62% identical/73% similar with Kip3p.
The motor domain of each polypeptide is located near its amino-terminal end, but there is a short nonmotor sequence at the amino terminus (Figure 1B). This amino-terminal region is variable in size (Klp5p, ~90 aa; Klp6p, ~110 aa) and is unique to each protein, with the exception of a conserved sequence of 18 aa (Figure 1C). A similar sequence is also found in UNC-104 kinesin subfamily members (for Internet attachments to sequence files see the Kinesin Home Page; http://www.blocks.fhcrc.org/%7Ekinesin), but the significance of this similarity is unknown.
Immediately carboxy terminal from the motor domain, these kinesins are
predicted to have a single turn of coiled-coil (see MATERIALS AND
METHODS) (Figure 1D). The position, length, and sequence of this region
are analogous to the
7 coil of kinesin heavy chain, which has been
shown to be sufficient for dimerization and critical in specifying
plus-end directed motility (reviewed in Sack et al., 1999
).
The carboxy-terminal half of each of these kinesins constitutes the tail domain, but there are no significant structural predictions for this domain. Each tail is also of variable length (Klp5p, ~450 aa; Klp6p, ~360 aa) and its sequence is unique to each protein. The theoretical isoelectric points for the tails of Klp5p (pI = 5.6) and Klp6p (pI = 10.6) further exemplify their differences. There is, however, a short region of 34 amino acids, designated the "tail box," which is highly conserved among just these two fission yeast Klps (Figure 1E). This sequence does not show any significant similarity with other proteins, although the lysine rich region bares some resemblance to several unrelated DNA binding proteins.
klp5+ and klp6+ Are not Essential for Vegetative Growth
The functions of klp5+ and
klp6+ were investigated through the
construction of null mutants. The entire open-reading frame for each
kinesin was deleted, and the resultant strains, designated klp5
and klp6
, were analyzed for growth
under various conditions (see MATERIALS AND METHODS). The growth of
klp5
and klp6
strains on solid medium was
virtually indistinguishable from wild type (Figure
2). They were, however, slightly darker
on plates containing the exclusion stain Phloxin B (Sigma), indicating
a subtle loss of viability (our unpublished data). The lack of a
significant growth defect in these klp
strains was
confirmed by examining growth in liquid culture. The klp6
strain did exhibit a slightly longer doubling time at both moderate and
high temperatures (Table 2).
Surprisingly, the klp5
klp6
double mutant
was also viable and not observably compromised (Figure 2 and Table 2).
Rather, growth of klp5
klp6
more closely
resembled that of the klp5
single mutant, so the
klp5+ deletion is epistatic to the
klp6+ deletion. Throughout our analyses of
these two kinesin genes, we repeatedly observed the strongest phenotype
in the klp6
strain, although the phenotypic differences
among the klp
mutants are subtle.
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klp5
and klp6
Cells Have Long Microtubules
Several kinesins alter the dynamics of microtubules in cells,
either by increasing or decreasing tubulin assembly (reviewed in Hunter
and Wordeman, 2000
). The loss of a motor enzyme with either of these
activities can have a distinct effect on cells, and it can therefore be
studied in several ways, including changes in cell morphology and
microtubule organization, interactions with tubulin mutants, and
altered sensitivity to microtubule drugs. We have used all these assays
to probe microtubule behavior in the klp
alleles and
found that the microtubules are stabilized by the absence of either
Klp5p or Klp6p.
Genetic interactions between klp
and tubulin were
examined by constructing double and triple mutants between
klp
strains and mutants in both
- and
-tubulin. The
klp
mutants were synthetically lethal with the
cold-sensitive, thiabendazole (TBZ)-sensitive,
-tubulin mutant
nda2-K52 (Toda et al., 1984
), because double and
triple mutants were not identified at the permissive (32°C) or
restrictive (20°C) temperatures for nda2-K53. No
interaction was apparent between the cold-sensitive, TBZ-resistant,
-tubulin mutant nda3-311 (Hiraoka et al.,
1984
), and the klp
strains (our unpublished data).
The klp
mutants grew comparatively well in the presence
of the microtubule-destabilizing drug TBZ, as demonstrated by plating assays (Figure 3). Wild-type cells failed
to grow in TBZ concentrations higher than 25 µg/ml at 32°C, but
klp
strains continued to grow in 75 µg/ml. Comparable
differences in resistance to TBZ among wild type and klp
strains were also seen at 25 and 36°C, although the lower temperature
increased the sensitivity of all strains to TBZ. No differences in TBZ
resistance were observed among the three klp
strains. The
ability of the klp
strains to withstand elevated
concentrations of a microtubule poison suggests that microtubules are
more stable in the absence of either of these two kinesins than in wild
type cells.
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If the microtubules in klp
cells are indeed hyperstable
then their length or organization would likely be altered. To test this
possibility, the microtubules in living cells were examined directly
with the use of GFP-
-tubulin. Wild-type interphase cells contain a
modest array of straight microtubules, which generally run essentially
from one end of the cell to the other (Figure 4A; reviewed in Hagan, 1998
). The
klp
strains, on the other hand, frequently contained
microtubules of sufficient length to curl around the ends of the cells
(Figure 4, B-D, arrows). As described for TBZ resistance, differences
between wild type and klp
were apparent, but no
significant difference in microtubule length or organization was
observed among the klp
strains. The tendency for
klp
microtubules to grow to the ends of cells and bend,
together with the resistance of these strains to TBZ, is consistent
with the hypothesis that both Klp5p and Klp6p promote microtubule
disassembly.
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cdc25+ Function Modulates Microtubule Behavior in the Absence of klp5+ and klp6+
Although defects in cytoplasmic microtubules often result in
defects in cell shape, the klp
cells have an apparently
normal cell morphology, both during log phase growth and as they emerge from stationary phase (our unpublished data). However, abnormal cell morphology was observed in certain genetic backgrounds that significantly increase cell size. The strongest effect was seen with
the temperature-sensitive cell cycle progression mutant
cdc25-22 (Figure 5). At
restrictive temperature this allele arrests cell cycle progression at`
the G2/M boundary, resulting in cells that are
>3 times longer than wild type (Fantes, 1979
). Even at permissive temperature cell cycle progression is somewhat delayed, resulting in
cells that are ~50% longer than wild type. The cdc25-22
cells grow with a straight, symmetric shape at both permissive and
restrictive temperatures (Figure 5, A and B). The klp
,
cdc25-22 strains, on the other hand, become progressively
bent as they get longer at restrictive temperature, forming
"C"-shaped cells (compare Figure 5, B and D). After 8 h of
arrest, virtually all of the cells had an abnormal morphology. Although
the bending was pronounced, it was generally symmetric, and the cells
septate in the middle of the C after they were released from
G2 arrest and divided (our unpublished data).
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The organization of the microtubule cytoskeleton in these cells was
determined with GFP-
-tubulin. The cdc25-22 cells had long, straight microtubules at both permissive and restrictive temperature, although the microtubules often failed to reach the ends
of the longer cells (Figure 5, E and F). The klp
,
cdc25-22 cells, in contrast, had especially long
microtubules that wrapped around the ends of the cells (compare Figure
5, E and G), even at permissive temperature. At restrictive
temperature, these microtubules sometimes curled before they reached
the ends of the cells (Figure 5H, arrows). This phenotype was the most
pronounced in the klp5
, klp6
,
cdc25-22 triple mutants.
The extreme elongation of microtubules in these cells could be due
either to a general effect from increased length, or to a more direct,
regulatory interaction between the klp5+
and klp6+ genes and
cdc25+. To distinguish between these
possibilities, we constructed klp
strains that grew
longer than wild type as a result of factors independent of
cdc25+, and we also examined interactions
between klp
and genes directly related to the function of
cdc25+.
The cdc10-V50 mutant arrests cell cycle progression at START
in G1 at 36°C, but the cells continue to
elongate at one end, becoming long and straight, similar to
cdc25-22 (Marks et al., 1992
). The microtubule
arrays in cdc10-V50 grown at either permissive or
restrictive temperature did not look different from wild type. The
klp
, cdc10-V50 cells, on the other hand,
became bent at restrictive temperature (Figure
6, A and B). These cells were similar to
the klp
cdc25-22 mutants, except they were
generally bent at just one end, forming "J-" rather than C-shaped
cells. The microtubules in klp
, cdc10-V50
cells sometimes bundled, but they were not long and curled as in
cdc25-22 (Figure 6, C and D).
|
Fission yeast diploids cells are ~85% longer than haploids (Nurse
and Thuriaux, 1980
), and they have microtubule arrays similar to those
seen in haploid cells (reviewed in Hagan, 1998
). The klp
/klp
homozygous diploid cells were
appropriately long and slightly bent, with an occasional curled
microtubule at 25°C, but at 36°C these effects became pronounced
(Figure 6, E-H).
Together, these results indicate that the normal shape of fission yeast
cells is disrupted when either klp5+ or
klp6+ is deleted and the cells are
sufficiently long. This effect is enhanced by growth at elevated
temperature. The effect of klp
on microtubule structure
varies depending on the genetic background, with the greatest effect
observed in cdc25-22 cells.
We asked whether cdc25+ might play a more
direct role in microtubule/motor regulation by generating double
mutants with klp
and other genes related to
cdc25+ function. The
wee1+ kinase acts antagonistically to the
cdc25+ phosphatase, inhibiting the
cyclin-dependent kinase cdc2+, and thus
restraining entry into mitosis. The lose-of-function allele,
wee1-50, produces cells that are small (Fantes, 1981
; reviewed in Forsburg and Nurse, 1991
) but have wild type microtubule arrays at both permissive and restrictive temperature (Figure 6, I and
J). The klp
, wee1-50 mutants showed no obvious
shape abnormality at permissive temperature, but at restrictive
temperature they were 15% shorter than wee1-50 alone at the
same temperature. At both temperatures, the microtubules in
klp
, wee1-50 cells tended to curl at the ends
of the cells (Figure 6, K and L).
Both Cdc25p and Wee1p act on the kinase encoded by
cdc2+, the master regulator of mitosis
(reviewed in Forsburg and Nurse, 1991
). We therefore looked for an
effect of the temperature-sensitive allele cdc2-33 on cell
morphology and/or microtubule organization in the klp
backgrounds. Both cell morphology and microtubule organization in the
cdc2-33 parental strain resembled that of cdc25-22, and they also elongated at restrictive temperature
(our unpublished data). The klp
, cdc2-33 cells
did tend to bend, but their microtubules did not curl more than was
seen in wild type cells (Figure 6, M-P).
These experiments reveal that cdc25+ can modulate microtubule behavior in a way that is normally masked by the expression of Klp5p and Klp6p, suggesting that this phosphatase may act on microtubule proteins to modulate tubulin dynamics.
Klp5p and Klp6p Localize to Cytoplasmic Microtubules and Mitotic Spindles
To better understand the functions of Klp5p and Klp6p in microtubule organization, each of these proteins has been localized in vivo, with the use of GFP fused to the carboxy terminus by integration of appropriate sequences at the klp5+ and klp6+ loci. This strategy assures that expression of each chimeric protein is under the control of its endogenous promoter (see MATERIALS AND METHODS). The Klp5p-GFP and Klp6p-GFP strains showed normal growth on plates and produced viable spores in meiotic crosses, indicating that the fusions did not significantly compromise motor function. Live cells were examined through the cell cycle, and the same pattern of localization was observed for both Klp5p and Klp6p.
The Klp-GFP proteins localized to cytoplasmic microtubules in
interphase cells, with no detectable preference for a subset of
microtubules or bias toward one microtubule end or the other (Figure
7, A and B). As the cells entered
mitosis, the Klp-GFP proteins localized to the mitotic spindle and the
astral microtubules (Figure 7, C and D). Immediately upon exit from
mitosis, the Klp-GFP proteins relocalized to cytoplasmic microtubules,
initially to the postanaphase array, and subsequently to the normal
interphase microtubules (Figure 7).
|
To determine whether the localization of either Klp5p or Klp6p is
dependent on expression of the other, we crossed each Klp-GFP strain
into the reciprocal klp
strain and examined the
distribution of fluorescence. Both of these double mutant strains
showed the same localization of Klp5p and Klp6p in their reciprocal
klp
background as was seen in the wild type background
(our unpublished data).
Together, these data demonstrate that both Klp5p and Klp6p localize to cytoplasmic microtubules in interphase and to both the mitotic spindle and astral microtubules in mitosis. The localizations of Klp5p and Klp6p were indistinguishable, although each protein localized independently of the other.
Interactions with Other Kinesins
Complex interactions among kinesin subfamily members have been
described in several systems (reviewed in Goldstein and Philp, 1999
).
Of particular interest for our studies of
klp5+ and
klp6+ are the antagonistic interactions
between budding yeast KIP3 and KIP2 (Cottingham
and Hoyt, 1997
; Miller et al., 1998
), and the aspects of
overlapping function between KIP3 and KAR3
(DeZwaan et al., 1997
; Cottingham et al., 1999
).
Similar interactions in fission yeast have been investigated by
constructing double, triple, and quadruple mutants between the
klp
strains and the relevant fission yeast homologs.
The KIP2 homolog tea2+ has
previously been characterized; null mutants are viable but have short
microtubules and often take on a "T" morphology (Browning et
al., 2000
). The klp
, tea2
double and
triple mutants were as viable as the parental single and double mutant
strains. Further, the T morphology phenotype described for
tea2
cells was neither enhanced nor rescued in
klp
backgrounds (our unpublished data). These data
suggest a lack of significant functional interaction among these
kinesins in fission yeast.
S. pombe has two KAR3 homologs,
pkl1+ and
klp2+ (Pidoux et al., 1996
;
Troxell et al., 2001
). Neither of these kinesins is
essential, either individually or together, but null mutants have
altered sensitivities to TBZ and severe meiotic phenotypes. The four
possible triple mutant combinations, and the klp5
,
klp6
, pkl1
, klp2
quadruple
mutant were constructed and analyzed for growth. There were no obvious
growth defects in any of the triple mutants, and the quadruple mutant
showed only a slight growth defect at 36°C (our unpublished data).
These data suggest a lack of significant functional redundancy among
the members of the KIP3 and KAR3 kinesin subfamilies in fission yeast.
klp5+ and klp6+ Are Essential for Meiosis
Kinesins (Meluh and Rose, 1990
) and dynein (Yamamoto et
al., 1999
; Troxell et al., 2001
) are important for
meiosis in several organisms, including yeasts, so we asked whether
klp5+ and
klp6+ play a role in meiosis of fission
yeast. S. pombe cells initiate a meiotic life cycle when
they are starved for nitrogen and when haploid cells of opposite mating
types are present. The meiotic cycle culminates with the formation of
an ascus containing four symmetric, haploid spores (Figure
8A). This configuration was observed in
90% of homozygous wild type zygotic asci. However, the
klp5
and klp6
strains showed only ~3%
wild type asci (four symmetric spores) (n = ~1000) in crosses
homozygous for either klp
allele. Heterozygous crosses
between these klp
alleles and wild type yielded a lower
frequency of abnormal asci (30-60% normal; n = 300). A wide
range of morphological anomalies was seen in klp
asci,
but the occurrence of asci that contained one single, large spore in
klp5
crosses suggests a defect in the first meiotic division (Figure 8B). The klp6
homozygous crosses
produced some one-spore asci, but pinched asci were also seen, which
may represent a failure to complete conjugation (Figure 8C).
|
Spore viability was greatly reduced in klp
homozygous
crosses, whereas heterozygous crosses of either klp5
or
klp6
with wild type showed nearly wild type spore
viability (Table 3A). In heterozygous
crosses between klp5
and klp6
, spore
viability was intermediate between that observed for wild type and
homozygous klp
crosses (Table 3A). Equivalent results
were obtained when the parental strains were either heterozygous for
klp5+ and
klp6+ in cis
(klp5
klp6
× wt) or
trans (klp5
× klp6
).
|
To distinguish between defects in the initial formation of a diploid
zygote versus subsequent meiotic DNA segregation, stable klp
diploid strains were isolated, grown vegetatively for
several generations, and then induced to sporulate. The relative
frequency of stable diploids isolated from klp5
crosses
was not significantly different than from wild-type crosses, but
klp6
/klp6
diploids were less frequently
found. These results suggest that zygote formation is not significantly
affected in klp5
but is compromised in
klp6
. Spore viability was not increased in any of the
klp
strains by first selecting for stable diploid cells,
indicating that meiotic defects subsequent to karyogamy result in loss
of spore viability (Table 3B).
| |
DISCUSSION |
|---|
|
|
|---|
KIP3 Kinesin Subfamily
We propose a new subfamily of kinesin-like proteins that includes
the fission yeast genes klp5+ and
klp6+ and the group's founding member,
KIP3, from S. cerevisiae. There are several
shared characteristics that define members of this new kinesin
subfamily. First and foremost, there is considerable sequence
similarity in their motor domains and in their general domain structure
and organization (Figure 1). Kip3p, Klp5p, and Klp6p also all localize
to cytoplasmic and spindle microtubules (Figure 7) (DeZwaan et
al., 1997
). Furthermore, Klp5p and Klp6p share with Kip3p an
activity that fosters microtubule disassembly, as evidenced by the
unusually long and/or robust microtubules found in null mutants
(Figures 3-6) (Cottingham and Hoyt, 1997
; DeZwaan et al.,
1997
; Miller et al., 1998
). Microtubule-disassembling activity has also been described for the KinI kinesin subfamily (XKCM1,
Walczak et al., 1996
; MCAK, Maney et al., 1998
;
Desai et al., 1999
) and for Kar3p (Endow et al.,
1994
). There is, however, no obvious sequence similarity between
members of the KIP3 subfamily and the other kinesins with
"exotubulase" activity. It is possible that each kinesin subfamily
uses a different mechanism to promote microtubule disassembly or that
there is conservation in protein structure that is not apparent from
the amino acid sequence.
Although all the KIP3 family members share the feature of promoting
microtubule disassembly, their roles in the physiology of each yeast
cell are distinct in several important ways. First, the
klp
mutants of fission yeast show disrupted patterns of
DNA segregation along the mitotic spindle but nuclear positioning appears normal (West et al., 2001
). KIP3, on the
other hand, is part of a pathway required for proper nuclear migration
to the bud neck early in mitosis, but movement of the chromosomes along the spindle appears normal (DeZwaan et al., 1997
). Second,
klp5+ and
klp6+ are not essential for vegetative
growth, even in the absence of KAR3 family members
pkl1+ and
klp2+. KIP3 is likewise
nonessential, but either KIP3 or KAR3 (Meluh and
Rose, 1990
) (together with at least one BimC family member) must be
present for viability, suggesting that budding yeast requires at least
one microtubule-destabilizing motor protein for survival (DeZwaan
et al., 1997
; Saunders et al., 1997
; Cottingham
et al., 1999
). S. pombe may not share this
requirement for a destabilizing motor, or this function may be
accomplished by other proteins expressed in the fission yeast cell.
Third, both klp5+ and
klp6+ are necessary for proper microtubule
organization and cell morphology in several genetic backgrounds. As
discussed below, this phenotype is particularly sensitive to the
activity of cell cycle regulatory phosphatase
cdc25+. However, no such functions have
been reported for KIP3 in budding yeast. Finally,
klp5+ and
klp6+ are both essential for meiosis, as
discussed below, whereas KIP3 is not (Cottingham and Hoyt,
1997
; Miller et al., 1998
).
Microtubules and Cell Morphology
The establishment and maintenance of cell polarity and morphology
is a microtubule-dependent process in fission yeast such that
perturbations in microtubule organization can produce defects in cell
shape and polarity (reviewed in Hagan, 1998
; Chang, 2001
). Previous
work has demonstrated that shortening microtubule length, either by
mutations in tubulin or tubulin-Cofactor genes (Umesono et
al., 1983
; Grishchuk and McIntosh, 1999
; Radcliffe et
al., 1999
), by the addition of TBZ (Sawin and Nurse, 1998
), or by
deletion of microtubule-associated proteins
(mal3+, Beinhauer et
al., 1997
; tea2+, Browning
et al., 2000
; tip1+, Brunner
and Nurse, 2000
; dis1+ and
mtc1+, Nakaseko et al., 2001
)
leads to the formation of T-shaped cells. Results presented here
suggest that an increase in microtubule length can cause bending at the
growing ends of the cells, resulting in C- or J-shaped cells. This
conclusion is supported by similar results reported for null mutants of
moe1+, a component of the Ras1 signaling
pathway (Chen et al., 1999
), and components of the
-tubulin complex (Paluh et al., 2000
; Vardy and Toda,
2000
). The changes in cell shape manifested in the klp
mutants described here occurred in genetic backgrounds and growth conditions that made the cells especially long, including several cell
cycle arrest mutants and diploid strains. There may be a heightened
sensitivity to changes in microtubule organization when the distance
between the cell's ends is significantly increased. The T phenotype of
tea2
cells is also enhanced when the cells are longer
(Browning et al., 2000
).
The klp
-mediated changes in morphology are also enhanced
by higher growth temperatures, as evidenced by the phenotype of klp
homozygous diploid cells grown at 36 versus 25°C.
This result is consistent with the hypothesis that the phenotype arises
as a result of hyperstabilized microtubules, because higher
temperatures generally favor microtubule assembly. A similar
temperature dependence has been reported for cell morphology defects
observed in cells treated with TBZ (Sawin and Nurse, 1998
). Because the
cell cycle mutants used here to produce long cells are all temperature
sensitive, it is not possible to distinguish clearly between the
effects of temperature and cell length. Nonetheless, several
observations argue that the effects we report are both temperature
dependent and enhanced by cell length. Normal cell shapes are observed
in both klp
, cdc25-22 and klp
diploid cells at 25°C, despite the presence of abnormal microtubules,
suggesting a temperature-dependent effect on cell morphology. On the
other hand, the normal cell shape seen in klp
haploid
cells at any temperature argues that increased cell length also
contributes to the bent cell phenotype. Moreover, the bent-cell
phenotype observed in all the cell cycle arrest mutants was greater as
the cells continued to get longer in the arrest.
The formation of C-shaped cells in the cdc25-22
background and of J-shaped cells in the cdc10-V50 background
is likely to be the consequence of monopolar (cdc10-V50)
versus bipolar (cdc25-22) cell growth. The switch between
these states, termed New-End Take Off, occurs at the beginning of
G2 (Mitchison and Nurse, 1985
). Thus, the arrest
points of cdc10-V50 (G1) and
cdc25-22 (late G2) are on opposite
sides of this event.
Examination of the microtubule cytoskeleton in the bent cells with
klp5
and klp6
genotypes indicates that the
interplay between cell elongation and the microtubule cytoskeleton is
not a simple matter of microtubule geometry. First, the organization of
the microtubules in the long klp
, cdc25-22 and
klp
diploid cells is distinct from either
klp
cdc10-V50 or klp
cdc2-33 cells, and from previously published ban
mutants (Verde et al., 1995
), although cell shape is similar
in all of these cases. Second, the cdc25-22 mutation had a
profound effect on the organization of the microtubules in the
klp
background at permissive temperature, but cell
morphology was not changed. Finally, the T morphology observed in
tea2
cells is not rescued in tea2
klp
double and triple mutants, although the
short-microtubule phenotype was at least partially rescued in these
mutants (our unpublished data). The effect of
cdc25+ function on microtubule
organization is discussed below, but the results discussed here
indicate that certain kinds of changes in microtubules do not affect a
cell's polar organization. Meanwhile, different changes in microtubule
arrangement can produce the same net result on cell morphology.
cdc25+ and Microtubule Organization
Even a subtle disruption in the function of
cdc25+ leads to a profound rearrangement
of the microtubule cytoskeleton in the absence of either
klp5+ or
klp6+ (Figure 5). Cells carrying the
temperature-sensitive allele cdc25-22 together with the
klp
mutations had extended microtubule arrays that often
curled around the ends of the cells, even at permissive temperature.
Several lines of evidence indicate that this effect is not simply the
result of the increased length of the cdc25-22 cells. First,
the effect was not observed in either cdc2-33 or cdc10-V50 cells, although they are similar in size to
cdc25-22. Second, curled microtubules were also observed in
klp
, wee1-50 cells, which are shorter than
wild-type cells. Third, the microtubules are also not likely to be
curling simply due to a physical barrier presented by the ends of the
cells, because the microtubules often curled before they reached the
ends of the cells. Moreover, the shorter klp
,
wee1-50 cells have a less severe phenotype than that
observed in cdc25-22 cells, contrary to what might be
expected if hyperstable microtubules were confined to a smaller space. These results favor a regulatory interaction between the microtubules and cdc25+ that is normally masked by the
presence of klp5+ and
klp6+. The interaction between
klp
and both wee1-50 and cdc25-22
may seem enigmatic because these mutants have opposite effects on cell
size and are antagonistic to each other in their regulatory pathway
(reviewed in Forsburg and Nurse, 1991
). It is possible, however, that
any alteration in the balance between Cdc25p and Wee1p activity leads
to aberrant microtubules.
It is also possible that the phenotype observed in klp
,
cdc25-22 mutants is dependent on cells being in
G2, and not on
cdc25+ activity, alone. This could explain
why the klp
, cdc10-V50 mutants do not have the
same phenotype. However, this seems unlikely because the majority of
the cdc2-33 cells are also arrested in
G2, and their phenotype more closely resembled
that of cdc10-V50. Furthermore, the klp
,
wee1-50 cells have a shortened G2
stage, and yet they also have the bent microtubule phenotype. At
present it is impossible to rule out other
G2-specific factors because the substrate for either cdc25+ or
wee1+ that affects microtubule behavior
remains unknown. Because the phenotype is present in null alleles of
klp5+ and
klp6+, it is likely that the potential
substrates revealed here include proteins other than these two
kinesins. The absence of the curled microtubules in the
klp
, cdc2-33 mutants suggests that the
mechanism is independent of MPF activity. Rather, it seems
likely that cdc25+ is interacting with an
unidentified gene whose activity is normally buffered by
klp5+ or
klp6+. A role for
cdc25+ in regulating microtubule behavior
is also indicated by interactions between the cdc25-22
allele and several other kinesins, including klp2+ (Sweezy and McIntosh, personal
communication), and tea2+ (Browning
et al., 2000
). Tubulin metabolism involves many different classes of genes, so the candidates for such a locus are numerous.
Meiosis
Our data indicate that both Klp5p and Klp6p play a major role in
the production of viable spores from meiosis. Crosses among klp5+ and
klp6+ null mutants produced zygotic asci
with abnormal morphologies and extremely low spore viability. Azygotic
asci induced from stable diploid cells displayed a similar loss in
spore viability. The similarity in phenotypes observed between zygotic
and azygotic spore formation suggests that these mutations lead to
meiotic defects downstream from conjugation and karyogamy. The precise point(s) of meiotic failure remains to be determined. The intermediate phenotype in heterozygous crosses between klp5
and
klp6
, versus heterozygous crosses between either
klp5
or klp6
and wild type, does suggest an
unusual, interallelic form of haplo-insufficiency for these two
kinesins in meiosis.
The essential role for both klp5+ and
klp6+ in the meiotic life cycle contrasts
strongly with the behaviors found for vegetative growth.
klp5+ and
klp6+ are the fifth and sixth motor
proteins demonstrated to have a major role in fission yeast meiosis
(cut7+, Hagan and Yanagida, 1990
;
dhc1+, Yamamoto et
al., 1999
; pkl1+ and
klp2+, Troxell et al., 2001
),
whereas only cut7+ is essential for mitosis
(Hagan and Yanagida, 1990
). This indicates that fission yeast meiosis
is very sensitive to the normal functioning of the microtubule
cytoskeleton compared with vegetative growth. It remains to be
determined whether the activity of each kinesin, per se, is distinct in
these two life cycle stages, or whether the differences between meiosis
and mitosis arise from differences in the mechanical requirements or
functional redundancies among the motor proteins used to achieve these
mechanics, or even from the checkpoints that operate in each life cycle stage.
| |
ACKNOWLEDGMENTS |
|---|
We thank Drs. Heidi Browning and Katya Grishchuk for helpful
suggestions and critical reading of the manuscript. We thank Da Qiao
Ding for the pDQ105 (GFP-
-tubulin) plasmid. We thank Christy Fillman
for help constructing the kinesin quadruple mutants. This work was
supported by National Institutes of Health grant GM-33787 to J.R.M.,
who is a Research Professor of the American Cancer Society.
| |
FOOTNOTES |
|---|
* Corresponding author. E-mail address: robert.west{at}colorado.edu.
| |
ABBREVIATIONS |
|---|
Abbreviations used: DAPI, 4', 6-diamino-2-phenylindole; KLP, kinesin-like protein; GFP, green fluorescent protein; PCR, polymerase chain reaction; RT, reverse transcriptase; TBZ, thiabendazole; YES, yeast extract with supplements.
| |
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