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Vol. 12, Issue 4, 1117-1129, April 2001

*Department of Cell Biology, University of Alabama at Birmingham,
Birmingham, Alabama 35294-0005; and
Department of Cell
and Developmental Biology, University of North Carolina at Chapel Hill,
Chapel Hill, North Carolina 27599
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ABSTRACT |
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Yeast phosphatidylinositol-transfer protein (Sec14p) is essential for Golgi secretory function and cell viability. This requirement of Sec14p is relieved by genetic inactivation of the cytidine diphosphate-choline pathway for phosphatidycholine (PtdCho) biosynthesis. Standard phenotypic analyses indicate that inactivation of the phosphatidylethanolamine (PtdEtn) pathway for PtdCho biosynthesis, however, does not rescue the growth and secretory defects associated with Sec14p deficiency. We now report inhibition of choline uptake from the media reveals an efficient "bypass Sec14p" phenotype associated with PtdEtn-methylation pathway defects. We further show that the bypass Sec14p phenotype associated with PtdEtn-methylation pathway defects resembles other bypass Sec14p mutations in its dependence on phospholipase D activity. Finally, we find that increased dosage of enzymes that catalyze phospholipase D-independent turnover of PtdCho, via mechanisms that do not result in a direct production of phosphatidic acid or diacylglycerol, effect a partial rescue of sec14-1ts-associated growth defects. Taken together, these data support the idea that PtdCho is intrinsically toxic to yeast Golgi secretory function.
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INTRODUCTION |
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Sec14p represents the major
phosphatidylinositol/phosphatidycholine (PtdIns/PtdCho)
transfer protein in yeast (Bankaitis et al., 1989
,
1990
). Analyses of mutations that allow yeast to survive in the
absence of the normally essential Sec14p demonstrate that Sec14p
integrates phospholipid metabolism with the phospholipid requirements
of Golgi secretory function (Cleves et al., 1991b
; Kearns
et al., 1998
). Our early hypotheses concerning the essential role of Sec14p in stimulating yeast Golgi secretory processes posited a
Sec14p-mediated modulation of an intrinsic toxicity of PtdCho to Golgi
function (Cleves et al., 1991a
,b
; McGee et al.,
1994
). One key finding that led to this hypothesis was that genetic
inactivation of the cytidine diphosphate (CDP)-choline pathway for
PtdCho biosynthesis effects "bypass Sec14p," whereas defects in the
PtdEtn-methylation pathway do not. These effects were observed
irrespective of the choline content of the medium upon which the bypass
Sec14p mutants were selected and scored at 37°C (Cleves
et al., 1991b
). Although issues of differential localization
of these two pathways were suggested to account for this puzzling
specificity, the concept was also raised that metabolic flux through
the CDP-choline pathway exerts its toxic effects by consuming a
critical metabolite (McGee et al., 1994
). Demonstrations that the PtdCho-bound form of Sec14p down-regulates CDP-choline pathway
activity emphasizes the antagonistic relationship between the
CDP-choline pathway and Golgi secretory function (McGee et al., 1994
; Skinner et al., 1995
; Phillips et
al., 1999
). This body of evidence led to our proposal that DAG is
a key stimulator of Golgi secretory function (Kearns et al.,
1997
, 1998
).
We now report that defects in PtdCho biosynthesis via the
PtdEtn-methylation pathway can also effect bypass Sec14p. We
demonstrate that sec14-1ts mutants engage
in a cycle of PtdCho turnover and recapture of excreted choline that
activates salvage of the released choline via the CDP-choline pathway.
This cycle obscures the bypass Sec14p effects that are associated with
PtdEtn-methylation pathway dysfunction. Conditions of either a genetic
or environmental nature that prevent active choline salvage endow
Sec14p-independent growth to yeast mutants deficient in
PtdEtn-methylation pathway activity. The bypass Sec14p associated with
PtdEtn-methylation pathway defects resembles all other known pathways
for bypass Sec14p in that it depends on an active phospholipase D (PLD)
(Sreenivas et al., 1998
; Xie et al., 1998
).
Finally, we demonstrate that increased rates of PtdCho degradation via
pathways that are independent of PLD and do not result in phosphatidic
acid (PtdOH) or diacylglycerol (DAG) formation, also exert a partial
suppression of sec14-1ts-associated growth defects.
Taken together, these data support the concept that PtdCho is
intrinsically toxic to yeast Golgi function, and that a primary function of Sec14p is to maintain a Golgi PtdCho composition that is
permissive for efficient transport of proteins from this organelle. This conclusion supports our early proposals that elevated PtdCho in
Golgi membranes is incompatible with Golgi secretory function (Cleves
et al., 1991a
,b
).
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MATERIALS AND METHODS |
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Yeast Strains, Plasmids, and Genetic Techniques
Yeast strains used in this study are listed in Table
1. Media and standard genetic techniques
have been described (Ito et al., 1983
; Rothstein, 1983
;
Sherman et al., 1983
). Plasmid shuffle assays for
complementation of sec14
were performed with yeast strain
CTY1461 (Table 1) as described (Lopez et al., 1994
; Phillips et al., 1999
). The plasmids used in this study are listed in
Table 2. Further details are available
from us upon request.
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Isolation of css Mutations
sec14-1ts strains were cultured in
liquid I+C
media at
26°C, culture aliquots were spread plated onto
I+C
agar, and the plates
were incubated at 35°C for 5 d. Revertant colonies were
isolated, patched onto
I+C
plates, and replica
plated onto I+C+ and
I+C
agar plates. The
replicas were incubated at 37°C for 36 h and scored for growth
relative to the sec14-1ts control strain.
The revertants whose growth was improved on
I+C
agar but not on
I+C+ agar were saved. These
css mutants were subsequently confirmed by their ability to
form single colonies on
I+C
, but not
I+C+, agar at 35°C.
Invertase Assay and Immunoprecipitation of Carboxypeptidase Y (CPY)
Invertase assays were performed as described by Salama et
al. (1990)
. CPY was precipitated from cell-free lysates prepared from radiolabeled yeast strains exactly as described previously (Bankaitis et al., 1989
; Cleves et al., 1991
;
Fang et al., 1996
).
Briefly, appropriate yeast strains were grown in Wickerham's minimal
media to mid-logarithmic phase at 26°C, shifted to 37°C for 2 h, and pulse-radiolabeled with 35S-labeled amino
acids for 30 min. Proteins were precipitated with trichloroacetic
acid and solubilized in SDS buffer. Immunoprecipitation of CPY
antigen, and separation and analysis of different CPY species by
SDS-PAGE and phosphorimaging have been described (Bankaitis et
al., 1989
; Cleves et al., 1991
; Fang et al.,
1996
).
Phospholipid Determinations
For measurements of steady-state phospholipid compositions,
appropriate yeast strains were grown for five to six generations at
26°C in I+C
or
I+C+media in the presence
[32P]orthophosphate (10 µCi/ml). In
pulse-radiolabeling experiments, appropriate yeast strains were grown
in I+C
or
I+C+ media to
mid-logarithmic phase at 26°C, and shifted to 33.5°C for 2 h.
[32P]Orthophosphate was then added into the
media to 10 µCi/ml and cells incubated in the presence of the label
at 33.5°C for 20 min. Incorporation of label was terminated by
addition of trichloroacetic acid to 5% and phospholipid extraction,
resolution by two-dimensional paper chromatography, and quantification
of individual phospholipid species was performed as described in detail
elsewhere (McGee et al., 1994
; Rivas et al.,
1999
; Li et al., 2000
).
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RESULTS |
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Isolation of Mutations that Suppress sec14-1ts Growth Defects in a Choline-sensitive Manner
We previously described the rationale for a genetic screen
designed to identify genes involved in promoting PtdCho turnover (Xie
et al., 1998
). Briefly, defects in the CDP-choline pathway for PtdCho biosynthesis relieve the normally essential Sec14p requirement for Golgi secretory function and cell viability (Figure 1A; Cleves et
al., 1991a
,b
). This bypass Sec14p effect is observed even when
yeast are grown in choline-free (C
) media
(Cleves et al., 1991b
). Under these conditions, the
CDP-choline pathway simply serves as a salvage pathway that scavenges
the choline liberated by PtdCho turnover and reuses it in a round of
PtdCho resynthesis. Because yeast cannot synthesize choline de novo,
this cycle does not contribute to net cellular PtdCho synthesis. On the
basis of those data we reasoned that defects in pathways for PtdCho
turnover that liberate free choline should impede metabolic flux
through the CDP-choline pathway when yeast are grown in
C
, but not in C+, media.
Such defects elicit bypass Sec14p phenotypes that are sensitive to
choline in the medium (Figure 1A).
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One of the genes we expected to identify in this screen for
choline-sensitive suppressors of sec14 defects
(css mutations) was the structural gene encoding
phospholipase D (PLD). A direct test of this predicted outcome was made
possible by finding that the nonessential SPO14 is the PLD
structural gene (Rose et al., 1995
). Counter to
expectations, we found that PLD activity is unconditionally essential
for all known mechanisms of bypass Sec14p (Xie et al.,
1998
). This finding indicated that the role of PLD in bypass Sec14p is
more complex than anticipated, and suggested that we did not fully
comprehend the relationship between PtdCho metabolism and Sec14p
function in yeast.
To further investigate how PtdCho metabolism might interface with
Sec14p function, we isolated and characterized css mutations (see MATERIALS AND METHODS). A total of 43 independent and
spontaneously arising css mutants was isolated. Standard
dominance tests, meiotic segregation, and genetic complementation
analyses were performed to assign these mutations into complementation
groups. A difficulty we encountered in such analyses of css
mutants was that growth of all sec14-1ts
css mutants is extremely poor on
I+C
plates at 37°C.
Indeed, these mutants fail to form single colonies under these
conditions, although single colonies are formed at 35°C. Reliable
visualization of the improved residual growth of sec14-1ts css mutants on
I+C
plates under
conditions restrictive for growth of
sec14-1ts parental strains required
replica plating at 37°C (Figure 3A). Streak plating of
sec14-1ts css mutants for
isolated colonies at 35°C was also used to confirm the results
gathered by replica plating.
A combination of dominance tests and complementation analyses demonstrated that all 43 css mutations are recessive to wild type and define three complementation groups. These were designated css1 (37 representatives), css2 (2 representatives), and css3 (4 representatives), respectively. Meiotic segregation analyses further demonstrated that each individual complementation group corresponds to a linkage group, indicating that the 43 css mutations identify three unlinked genes.
As shown in Figure 1B, the growth of all
sec14-1ts css mutants is
exquisitely sensitive to exogenous choline at restrictive temperatures.
Introduction of low concentrations of choline into agar plates (5 µM
final concentration) results in a strong inhibition of growth, whereas
increasing exogenous choline to a concentration of 10 µM inhibits
growth completely (Figure 1B). Choline concentrations as low as 1 µM
also detectably inhibit growth. By contrast, exogenous ethanolamine (1 mM) has no effect on the growth of
sec14-1ts css strains,
irrespective of whether inositol is present in the medium
(unpublished data). Finally, css3 mutants, although
inositol prototrophs, nonetheless require inositol for
manifestation of the css phenotype. All
sec14-1ts css3 mutants fail to
grow on I
C
medium at
37°C. Depletion of inositol from the medium has no effect on
growth of sec14-1ts css1 and
sec14-1ts css2 mutants, however
(Figure 1B).
css Mutants Are Defective in PtdEtn-Methylation Pathway Activity
To investigate whether css mutations influence PtdCho
turnover, we first analyzed the bulk phospholipid profiles of
css mutant strains (see MATERIALS AND METHODS).
Unexpectedly, all css mutants displayed profiles diagnostic
of compromised activity of the PtdEtn-methylation pathway for PtdCho
biosynthesis. Even in I+C+
media, where the CDP-choline pathway is a major contributor to PtdCho
biosynthesis, all css mutants exhibit reduced PtdCho levels. Moreover, css1 mutants exhibit a twofold increase in bulk
PtdEtn, whereas css2 mutants accumulate
phosphatidylmonomethylethanolamine (PMME; Figure
2A). PMME is an
intermediate in the conversion of PtdEtn to PtdCho via the
PtdEtn-methylation pathway. In
I+C
media, where the
PtdEtn-methylation pathway is the sole route for net synthesis of bulk
PtdCho, defects in the activity of this pathway are most dramatic.
Under these conditions, we record a fourfold reduction in bulk PtdCho
and a threefold elevation in bulk PtdEtn in css1 mutants,
whereas css2 mutants exhibited a 30-fold reduction in bulk
PtdCho and 30-fold elevations in levels of both PMME and
phosphatidyldimethylethanolamine (PDME; Figure 2B). PDME is produced
from PMME, and is the immediate precursor to PtdCho in the
PtdEtn-methylation pathway (Figure 1A). Finally, css3
mutants display only modest reductions in bulk PtdCho and modest
accumulations of PtdEtn under these conditions (Figure 2B).
Inositol depletion has no significant effect on the
phospholipid profiles of css1 and css2 strains,
regardless of whether choline is present in the medium or not.
Inositol depletion evokes a significant reduction in bulk
PtdIno levels in css3 mutants, however (our unpublished
data).
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CSS Genes Represent Structural Genes for Enzymes and Regulators of the PtdEtn-Methylation Pathway
The phospholipid profiles obtained for each css mutant provided strong clues for the molecular identities of the CSS genes. The accumulation of PtdEtn at the expense of PtdCho strongly implicated css1 mutations as alleles of CHO2, the PtdEtn methyltransferase structural gene (Figure 1A). This enzyme catalyzes the methylation of PtdEtn to produce PMME. The observed accumulation of both PMME and PDME in lieu of PtdCho suggested that css2 mutations are OPI3 alleles. OPI3 encodes a distinct phospholipid methyltransferase, which catalyzes the methylation of PMME to PDME and PDME to PtdCho (Figure 1A). Finally, the css3 profiles, when coupled with their inositol-dependent css phenotypes, strongly suggested these are hypomorphic alleles of INO2 or INO4. These genes encode transcription factors required for expression of not only CHO2 and OPI3 but also of INO1 whose product is required for de novo synthesis of inositol in yeast.
That css1, css2, and css3 mutations
represent alleles of CHO2, OPI3, and
INO4, respectively, is formally demonstrated by the collective weight of three lines of evidence. First, we find that low
copy plasmids bearing individual CHO2, OPI3, or
INO4 genes specifically complement css1,
css2, and css3 mutations, respectively. Second,
we find that naive cho2
, opi3
, and
ino4
alleles themselves exhibit css phenotypes
when introduced into sec14-1ts strains
(our unpublished data). Third, meiotic segregation analyses indicate a tight genetic linkage between css1 and
cho2
::HIS3, css2 and
opi3
::HIS3, and css3 and
ino4
::URA3. In these linkage experiments, diploid strains CTYD174 (css1
s14-1ts/cho2
sec14-1ts), CTYD175 (css2
sec14-1ts/opi3
sec14-1ts), and CTYD176 (css3
sec14-1ts/ino4
sec14-1ts) were generated (Table 1). Each
of these diploids exhibits css phenotypes, consistent with
CSS1/CHO2, CSS2/OPI3, and CSS3/INO4 allelic assignments. Analysis of at least 20 tetrads derived from each
diploid confirmed these allelic assignments. In all cases, only
parental di-type asci were recovered (4:0 css
[Ts+]:0 CSS
[ts
] spores). From this point forward, we use
the CHO2, OPI3, and INO4 genetic
nomenclature for CCS1, CSS2, and CSS3, respectively.
Because ino4 mutations were encountered in the screen for
css mutants, and because the INO4 and
INO2 gene products cooperate in regulating expression of
CHO2 and OPI3, we also tested whether ino2
mutations elicit css phenotypes. As
expected, sec14-1ts ino2
strains closely resemble sec14-1ts
ino4
mutants from the standpoint that these exhibit
css phenotypes that are considerably weaker than those
associated with either sec14-1ts
cho2 or sec14-1ts
opi3 strains (our unpublished data). Although both
the INO4 and INO2 gene products are required for
optimal expression of CHO2 and OPI3,
ino4
and ino2
mutations result in only
modest reductions in PtdEtn-methylation pathway activity in vivo
(Figure 2, A and B; unpublished data). Because
ino4
and ino2
mutants exhibit the weakest
css phenotypes, these collective data indicate that strength
of the css phenotype is inversely proportional to
PtdEtn-methylation pathway activity. In the following
characterizations, we limit our analyses to cho2 and
opi3 mutants.
PtdEtn-Methylation Pathway Defects Efficiently Restore Growth to Sec14p-deficient Yeast When Choline Reuptake Is Blocked by Inactivation of the Choline Transporter
Because PLD is activated in Sec14p-deficient yeast cells, we considered the possibility that PLD activity and the efficient recapture of excreted choline cooperate to drive CDP-choline pathway activity when yeast are grown in choline-free media. We reasoned that such a choline reuptake mechanism might obscure bypass Sec14p phenotypes that would otherwise be associated with defects in PtdEtn-methylation pathway function. A basic prediction of this hypothesis is that prevention of choline reuptake will potently improve the ability of PtdEtn-methylation pathway defects to promote Sec14p-independent cell growth.
To test this hypothesis, we determined whether disruption of the single
high-affinity choline transporter of yeast (HNM1 gene product; Nikawa et al., 1990
) improves growth of
sec14-1ts cho2 and
sec14-1ts opi3 strains at
37°C. The phenotypic data clearly demonstrate that hnm1
not only significantly improves the growth of
sec14-1ts cho2 and
sec14-1ts opi3 mutants on
I+C
plates but also
enables these strains to grow well on choline-rich I+C+ and YPD plates at
37°C (Figure
3A).
Hnm1p dysfunction completely blocks the uptake of
exogenous choline by yeast cells (Nikawa et al., 1990
) and
also impedes the uptake of exogenous ethanolamine (Nikawa et
al., 1986
). Because even high concentrations of exogenous ethanolamine (1 mM) have no effect on the weak rescue of
sec14-1ts growth defects by
cho2 and opi3 on
I+C
media at 35°C or
37°C (see above), we conclude that diminished choline reuptake is the
basis for the observed effects.
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Combined Defects in Activities of the PtdEtn-Methylation Pathway and the Choline Transporter Bypass the Essential Cellular Requirement for Sec14p
We used a plasmid shuffle strategy to determine whether the
combination of PtdEtn-methylation pathway mutations and choline transporter defects is sufficient to effect rescue of
sec14
(see MATERIALS AND METHODS). We introduced an
hnm1
::URA3 allele into a
sec14
::hisG strain (CTY1469)
carrying an endogenous YEp(SEC14 LEU2) plasmid that is
required for the viability of this strain because this plasmid covers
the unconditionally lethal
sec14
::hisG allele. Subsequently,
either cho2
::HIS3 or
opi3
::HIS3 alleles were introduced
into CTY1469 under conditions where the YEp(SEC14 LEU2)
plasmid was subject to selection for leucine prototrophy. These
cho2
::HIS3 and
opi3
::HIS3 derivative strains
(CTY1470 and CTY1471; Table 1) were then streaked onto YPD plates to
relieve the nutritional selection pressure for YEp(SEC14
LEU2). The ability of these yeast strains to spontaneously cure
the plasmid was assessed by monitoring the recovery of white
colonies/colony sectors that exhibited unselected
Leu
phenotypes. We find that, although the
parental control strain CTY1469 is unable to cure the plasmid, both
CTY1470 and CTY1471 readily do so. These data demonstrate that
cho2
::HIS3 and
opi3
::HIS3 alleles exert efficient
bypass Sec14p phenotypes under conditions where choline uptake/reuptake
is prevented. Remarkably, hnm1
renders deficiency in
PtdEtn-methylation pathway function as potent a mechanism for bypass
Sec14p as is CDP-choline pathway dysfunction.
PtdEtn-Methylation Pathway Defects Restore Growth to Sec14p-deficient Yeast in Liquid Media
Our demonstration that choline recapture dramatically attenuates
the bypass Sec14p phenotype of PtdEtn-methylation pathway deficiencies
suggests that the context in which bypass Sec14p mutants are selected
has a significant bearing on what types of bypass Sec14p mutants are
recovered. Initial selections involved plating of
sec14-1ts cells and selecting for
revertants that grew as single colonies on solid medium at 37°C
(Cleves et al., 1989
, 1991b
). Efficient mechanisms of
choline reuptake could potentially operate under these conditions
because diffusion of choline away from cells is slower in choline-free
agar than it is in the corresponding liquid medium. However, choline
recapture should be much less efficient in liquid medium. Thus,
PtdEtn-methylation pathway defects are predicted to effect bypass
Sec14p in choline-free liquid medium, even in the face of choline
transporter activity.
To test this possibility, appropriate strains were picked from freshly
streaked YPD plates, inoculated into
I+C
media, and incubated
at 37°C. Culture growth was monitored by measuring the
OD600 of the culture as a function of time. The sec14-1ts strain exhibits an initial
doubling time of ~6 h after which it ceases growing (Figure 3B). The
sec14-1ts opi3 strain, however,
grows nearly as robustly as the wild-type control strain under these
conditions and the culture reaches saturation ~12 h after inoculation
(Figure 3B). Thus, in contrast to what is observed on solid growth
media, the opi3 allele efficiently rescues
sec14-1ts-associated growth defects when
the test is performed in choline-free liquid media. As expected, the
hnm1
allele does not further improve the growth of
sec14-1ts opi3 strains in
I+C
liquid medium at
37°C (Figure 3B).
To confirm that extracellular choline is growth inhibitory to the
sec14-1ts opi3 strain, we
supplemented a base I+C
liquid medium with choline to final concentrations of 1 and 10 µM.
The growth of sec14-1ts opi3
cells at 37°C in these media was then assessed. Choline at a
concentration of 1 µM effects a marked inhibition of cell growth,
whereas 10 µM choline abolishes cell growth completely (our
unpublished data). These collective data indicate that a choline
transporter-mediated mechanism for choline recapture from the
extracellular milieu, and the subsequent salvage of recaptured choline
through the CDP-choline pathway for PtdCho biosynthesis, significantly
obscure the bypass Sec14p phenotype associated with PtdEtn-methylation
pathway dysfunction.
Demonstration of Choline Recapture on Solid Media
To test the idea that choline transporter activity mediates
efficient choline recapture when cells are cultured on solid
I+C
medium, we designed a
sensitive bioassay to score the net leakage of choline from cells in
the presence and absence of the choline transporter. The exquisite
sensitivity of sec14-1ts opi3
strains to the growth inhibitory effects of exogenous choline at
restrictive temperatures (Figure 1B) forms the basis for a cross-feeding assay designed to demonstrate a paracrine uptake of
excreted choline. In this assay, we deposited a heavy bolus of
sec14-1ts opi3 or
sec14-1ts opi3 hnm1
yeast cells (as choline feeders) onto a lawn of
sec14-1ts opi3 cells (as
indicator) on I+C
plates,
and incubated the plates at 37°C for 36 h. These incubation conditions result in PLD activation and subsequent stimulation of
PtdCho hydrolysis to PtdOH and free choline. Leakage of choline from
the feeder colony is manifested by the inhibition of growth of the
surrounding indicator cells. As shown in Figure 3C, no halo of
inhibition is formed when the feeder possesses a wild-type HNM1 gene. This result indicates that little if any choline
escaped from the feeder colony. By contrast, introduction of
hnm1
into the feeder strain results in formation of a
clearly discernable halo surrounding the feeder colony. Experiments
where sec14-1ts cho2 cells are
used as feeder, or where sec14-1ts
cho2 cells are used as indicator yield similar results (our
unpublished data).
Measurements of PtdCho Synthesis
The collective results indicate that inhibition of choline reuptake is required for efficient down-regulation of PtdCho synthesis in sec14-1ts cho2 and sec14-1ts opi3 mutants at 37°C. We expected that choline recapture sustains PtdCho synthesis by driving activity of the CDP-choline pathway. This hypothesis predicts that metabolic flux through the CDP-choline pathway is low in sec14-1ts cho2 and sec14-1ts opi3 mutants incubated under conditions permissive for bypass Sec14p, but that CDP-choline pathway activity is high under conditions restrictive for cho2- and opi3-mediated bypass Sec14p.
We tested these predictions by monitoring CDP-choline pathway activity
in sec14-1ts cho2 mutants
cultured in I+C
and
I+C+ media, i.e.,
permissive and restrictive conditions for bypass Sec14p, respectively.
We also performed these experiments with hnm1
derivatives
of these strains for which bypass Sec14p is no longer a function of the
choline content of the medium. As positive and negative controls for
CDP-choline pathway activity, we used isogenic
sec14-1ts and
sec14-1ts pct1 mutants,
respectively. To measure metabolic flux through the CDP-choline pathway
without the complication of adding radiolabeled choline to the medium,
we monitored the incorporation of 32P into PtdCho
in a 20-min pulse radiolabeling experiment at a semipermissive
temperature for sec14-1ts strains
(33.5°C). In this regimen, PLD-dependent PtdCho turnover is
stimulated and CDP-choline pathway activity is the predominant contributor to PtdCho synthesis (McGee et al., 1994
; Rivas
et al., 1999
; Li et al., 2000
).
As shown in Figure 3D, a comparison of the rates of
32P incorporation into PtdCho in SEC14
and sec14-1ts strains cultured in
I+C+ versus
I+C
medium demonstrates
that CDP-choline pathway activity is highly stimulated by inclusion of
choline in the medium. Of the total extractable lipid phosphate, the
wild-type strain cultured in I+C+ and
I+C
medium incorporates
27.7 ± 1.3 and 2.0 ± 0.17% of the
32P radiolabel into PtdCho, respectively. For the
isogenic sec14-1ts strain, 40.3 ± 5.5 and 17.3 ± 1.3% of the radiolabel is incorporated into
PtdCho under these same conditions, respectively. The increased rate of
CDP-choline pathway activity in the
sec14-1ts strain is in agreement with
previous reports that Sec14p down-regulates this pathway (McGee
et al., 1994
; Skinner et al., 1995
). Genetic inactivation of the CDP-choline pathway in the
sec14-1ts pct1 mutant reduces
the rate of PtdCho biosynthesis to nearly undetectable levels when
cells are cultured in I+C+
or I+C
medium (1.8 ± 0.15 and 1.8 ± 0.6% of extractable lipid
32P incorporated into PtdCho, respectively).
Introduction of the hnm1
allele into the
sec14-1ts mutant reduced CDP-choline
pathway activity in cells grown in I+C+ medium approximately
fourfold from 40.3 ± 5.5 to 17.5 ± 2.7% of extractable
lipid 32P incorporated into PtdCho, respectively.
This level of incorporation was similar to that recorded for
sec14-1ts hnm1
cells
incubated in choline-free medium (17.3 ± 2.0%; Figure 3D). These
levels of PtdCho synthesis are intermediate between the values recorded
for the sec14-1ts and
sec14-1ts pct1 mutants. The
residual activity of the CDP-choline pathway measured in the
hnm1
derivatives likely represents salvage of an
intracellular choline pool that is generated by PtdCho turnover, but is
not excreted from the cells.
The PtdCho profile of the sec14-1ts
cho2 mutant is essentially indistinguishable from that of
the isogenic sec14-1ts control when the
strains are incubated in
I+C+ medium (Figure 3D).
However, CDP-choline pathway activity in the cho2 mutant is
clearly reduced relative to the positive control when cells are
incubated in I+C
medium
(6.5 ± 0.31 versus 17.3 ± 1.3 of extractable lipid
32P incorporated into PtdCho, respectively).
Introduction of the hnm1
lesion into the
sec14-1ts cho2 derivative
reduces CDP-choline pathway activity in cells grown in
I+C+ medium (9.4 ± 1.1% of extractable lipid 32P incorporated into
PtdCho) to a level resembling that recorded for
sec14-1ts cho2
hnm1
cells incubated in choline-free medium (7.7 ± 1.9% of extractable lipid 32P incorporated into
PtdCho; Figure 3D). Thus, in accord with expectations, metabolic flux
through the CDP-choline pathway is low when
sec14-1ts cho2 mutants are
incubated under conditions permissive for bypass Sec14p, and
CDP-choline pathway activity is high under conditions restrictive for
cho2-mediated bypass Sec14p.
Golgi Secretory Function in Sec14p-deficient PtdEtn-Methylation Pathway Mutants
To determine whether the bypass Sec14p phenotypes associated with
cho2 and opi3 alleles extend to rescue of
sec14-1ts-associated secretory defects, we
used efficiency of invertase secretion as an indicator of yeast
secretory competence. This measurement is quantified by an invertase
secretion index that relates the percentage of secreted invertase
relative to the total amount of invertase produced by the cells
(Bankaitis et al., 1989
; Franzusoff and Schekman, 1989
;
Salama et al., 1990
). In these experiments, we quantify the
secretory efficiencies of yeast strains cultured at 37°C in
I+C
liquid growth media
(i.e., conditions where cho2 and opi3 alleles efficiently rescue sec14-1ts-associated
growth defects). These values are then compared with the corresponding
secretory efficiencies measured in
I+C+ liquid media (i.e.,
restrictive conditions for cho2- and
opi3-mediated rescue of
sec14-1ts growth defects).
Wild-type yeast cells secreted invertase rapidly and efficiently when
cultured in either I+C
or
I+C+ liquid media. As shown
in Figure 4A, the secretion
indices for the wild-type strain are 99 ± 7.0 and 98.7 ± 6.1% in I+C
and
I+C+ conditions,
respectively. By contrast, the secretion index for the isogenic
sec14-1ts strain is 21.7 ± 5.1% in
I+C+ medium. This reduced
secretory index reflects accumulation of invertase in the lumen of the
yeast Golgi complex. Interestingly, the secretion index of the
sec14-1ts strain is modestly, but
significantly, improved to 36.6 ± 4.7% simply by culturing the
strain in I+C
medium
(Figure 4A).
|
Secretion indices recorded for the
sec14-1ts cho2 and
sec14-1ts opi3 strains cultured
in I+C+ medium are
21.0 ± 4.1 and 19.2 ± 2.1%, respectively. These values are
indistinguishable from those measured for the isogenic
sec14-1ts strain cultured under the same
conditions, and these secretory defects are consistent with the
choline-sensitive growth of cho2 and opi3 strains
at temperatures restrictive for function of the sec14-1ts gene product. By contrast, the
invertase secretion indices of the
sec14-1ts cho2 and
sec14-1ts opi3 strains cultured
in I+C
liquid medium are
87.2 ± 4.4 and 81.7 ± 9.1%, respectively (Figure 4A).
These values are very similar to those recorded for the wild-type strain, indicating that cho2 and opi3
individually restore near wild-type efficiencies of invertase secretion
to Sec14p-deficient cells when these were cultured in choline-free
media. Introduction of hnm1
into
sec14-1ts cho2 and
sec14-1ts opi3 strains also
restores wild-type invertase secretion profiles to these mutants,
regardless of the choline-content of the medium (our unpublished data).
In an independent evaluation of Golgi secretory function, we employed
pulse-chase methods to monitor the trafficking of carboxypeptidase Y
(CPY) through the secretory pathway to vacuole. As illustrated in
Figure 4B, the wild-type strain grown in either
I+C+ or
I+C
liquid media
accumulates predominantly the 61 kDa mature form CPY (mCPY). Only trace
amounts of the 67 kDa and the 69 kDa endoplasmic reticulum and Golgi
precursor forms (p1 and p2 CPY, respectively) are observed. Because
mCPY represents the vacuolar form of the enzyme, these data demonstrate
the rapid trafficking of CPY through the yeast secretory pathway to the vacuole.
The isogenic sec14-1ts mutant cultured in
I+C+ medium, however,
accumulates ~70% of the total labeled CPY as p2 CPY (Figure 4B). These results diagnose the defective transport of CPY from the Golgi
complex in Sec14p-deficient strains. This trafficking block is
substantially relieved when the sec14-1ts
strain is challenged with the restrictive temperature in
I+C
medium. Under these
conditions, some 40% of the total labeled CPY is in the p2 form,
whereas the remaining fraction is delivered to the vacuole and
recovered as mCPY (Figure 4B). Thus, as in the invertase secretion
measurements, simple omission of choline from the medium effects a
detectable suppression of the secretory defects associated with Sec14p deficiency.
When incubated in
I+C+ medium at 37°C,
sec14-1ts cho2 and
sec14-1ts opi3 strains exhibit
CPY profiles that are indistinguishable from those recorded for the
isogenic sec14-1ts mutant. That is,
~70% of the total labeled CPY accumulates in the p2 form. When the
experiment is performed in
I+C
medium, the CPY
profiles of both the sec14-1ts
cho2 and sec14-1ts
opi3 mutants are indistinguishable from those recorded for
the wild-type strain. Nearly all of the labeled CPY is recovered as mCPY (Figure 4B). Again, hnm1
restores wild-type
efficiencies of CPY trafficking to the vacuole in
sec14-1ts cho2 and
sec14-1ts opi3 strains
irrespective of the choline content of the medium (our unpublished
data). These collective data emphasize the point that PtdCho
synthesis is toxic to yeast Golgi secretory function in the absence of
a functional Sec14p. Evidence that at least one aspect of this toxicity
involves an intrinsic toxicity of PtdCho itself is presented below.
Bypass Sec14p Phenotype Associated with cho2 hnm1
and opi3
hnm1
Alleles Is PLD-dependent
We previously demonstrated that all known pathways for bypass
Sec14p exhibit the dual requirement for PLD catalytic activity, and an
ability of PLD to properly access its PtdCho substrate in vivo (Xie
et al., 1998
). It was therefore of interest to determine whether the bypass Sec14p effected by PtdEtn-methylation pathway defects exhibits a similar PLD requirement. To investigate this issue,
a spo14
allele was introduced into
sec14-1ts cho2 hnm1
and into
sec14-1ts opi3 hnm1
strains,
and the growth phenotypes of these strains were assessed on YPD plates
at 37°C. As shown in Figure 5A,
spo14
has no effect on the
growth of the SEC14 hnm1
control strain, but this
mutation prevents growth of both the
sec14-1ts cho2 hnm1
and the
sec14-1ts opi3 hnm1
strain.
Neither expression of a catalytic-dead
spo14K
H PLD form (Sung et
al., 1997
) nor of a catalytically active form of PLD that fails to
localize to membranes
(spo14
N ;Rudge
et al., 1998
), complements the
spo14
-associated ts
growth phenotype of these strains (Figure 5B). Finally, this acquired
ts
phenotype reflects a reimposition
of a Sec14p requirement for growth as evidenced by the fact that
SEC14 cho2 hnm1
spo14
and SEC14 opi3
hnm1
spo14
mutants grow well under these
conditions (unpublished data).
|
These data indicate that bypass Sec14p phenotypes associated with PtdEtn-methylation pathway defects require the participation of a catalytically active PLD that retains the ability to efficiently interface with its PtdCho substrate in vivo.
Relative Efficiencies of Plb1p and Pik1p Overexpression in Rescue of sec14-1ts-associated Growth Defects
PLD catalyzes hydrolysis of PtdCho to produce PtdOH and choline.
PLD activity may support the suppression by the breakdown of PtdCho, or
by the generation of a downstream metabolite PtdOH/DAG, or both.
Present evidence indicates that generation of a downstream metabolite
is a contributing factor to bypass Sec14p (Xie et al., 1998
;
Rivas et al., 1999
). Yeast express a PLB1 gene
that encodes a protein with both phospholipase B and lysophospholipase
activity. Plb1p catalyzes a concerted deacylation of PtdCho and PtdEtn
to glycerophosphocholine and glycerophosphoethanolamine, respectively. These compounds are generated without formation of a discrete lysophospholipid intermediate, and are excreted into the medium (Lee
et al., 1994
; Whit et al., 1994).
To determine whether Plb1p-mediated PtdCho hydrolysis modulates
sec14-1ts-associated growth defects, we
constructed a multicopy plasmid that directs expression of
PLB1 via the powerful promoter of the yeast phosphoglycerate
kinase structural gene (PGK). This plasmid, YEp(PPGK::PLB1), was
introduced into a sec14-1ts strain and its
phenotypic effects were determined. Our expectation was that Plb1p
would serve as a negative control in experiments studying the
relationship between PtdCho turnover and Sec14p function. Because this
phospholipase is predicted to localize to the plasma membrane in an
orientation where its active site is exposed to the noncytoplasmic
leaflet of this membrane (Whit et al., 1984; Lee
et al., 1994
), we expected that Plb1p activity would be
irrelevant to any Sec14p-dependent pathway. Surprisingly, we found that
YEp(PPGK::PLB1) clearly
improved the growth of sec14-1ts strains
at restrictive temperatures. As shown in Figure 5C, the parental
sec14-1ts strain does not grow at all when
incubated at 35°C. The
YEp(PPGK::PLB1) derivative, however, grows at this temperature and forms isolated colonies. The growth rate is significantly slower than that exhibited by the isogenic wild-type strain. Moreover,
YEp(PPGK::PLB1) only partially rescues sec14-1ts growth defects
because the effect is not observed at 37°C.
We cannot provide a precise rationale for this unanticipated result, given the expected topology of Plb1p. Perhaps yeast cells accelerate a flipping of PtdCho from the cytoplasmic leaflet of the plasma membrane (or other intracellular membranes, such as the Golgi complex) to the opposing leaflet when a PtdCho deficit is imposed upon the noncytoplasmic leaflet. Alternatively, Plb1p overproduction might result in sustained levels of active Plb1p in the cytoplasm, thereby promoting the abnormal deacylation of PtdCho in the cytoplasmic leaflet of intracellular membranes.
The idiosyncratic nature of the effect notwithstanding,
YEp(PPGK::PLB1) effects a
stronger suppression of sec14-1ts growth
defects than does a YEp(PIK1) plasmid, which drives
overexpression of the Pik1p PtdIns 4-kinase (Walch-Solimena and Novick,
1999
). Hama et al. (1999)
reported that
YEp(PIK1) suppresses sec14-1ts
growth defects at 34°C and interpreted that result to indicate that
the critical function of Sec14p is to stimulate Pik1p-dependent synthesis of PtdIns-4-phosphate. We do not find that
YEp(PIK1) exerts a significant effect on
sec14-1ts-associated growth defects at 34 or 35°C, yet
YEp(PPGK::PLB1) clearly
does (Figure 5C). Because Plb1p deacylates PtdCho to products that
cannot be directly metabolized to PtdOH or DAG, we conclude that the
benefit realized by Sec14p-deficient mutants overproducing Plb1p is
related to PtdCho hydrolysis itself. These data suggest an intrinsic
toxicity of PtdCho to Sec14p-dependent Golgi function in yeast. This
result agrees with our previous demonstration that a mutant Sec14p that
retains only its PtdCho-transfer activity, and its ability to
down-regulate PtdCho synthesis via the CDP-choline pathway in vivo,
fulfills all essential Sec14p functions in vivo (Phillips et
al., 1999
).
| |
DISCUSSION |
|---|
|
|
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Herein, we describe a body of evidence that indicates an intrinsic
toxicity of PtdCho to Golgi function in yeast. The data support the
concept that a primary function of Sec14p is to modulate PtdCho
biosynthesis so that an appropriate balance is maintained between
PtdCho production and a Golgi PtdCho content that is permissive for
protein transport from this organelle. Our data also provide a solution
to the long-standing puzzle for why defects in the CDP-choline pathway
for PtdCho biosynthesis efficiently effect bypass Sec14p, whereas
defects in PtdCho synthesis via the PtdEtn methylation pathway do not
(Cleves et al., 1991b
). Namely, that a cycle of PtdCho
turnover, coupled to choline excretion and reuptake, activates the
CDP-choline pathway and obscures the bypass Sec14p phenotype that would
normally be associated with inactivation of the PtdEtn-methylation
pathway (Figure 6).
|
Initial clues regarding pathways for bypass Sec14p that involve
PtdEtn-methylation dysfunction came from a genetic screen we had
originally devised for the purpose of detecting mutations that
compromise PtdCho turnover (Xie et al., 1998
). Of the three genes identified by this screen, we found that two correspond to
CHO2 and OPI3, i.e., structural genes that encode
for distinct phospholipid methyltransferases that are involved in the
de novo production of PtdCho from PtdEtn. The third gene encodes a
transcription factor, Ino4p, that has long been known to cooperate with
its Ino2p binding partner in driving optimal expression of phospholipid biosynthetic genes such as CHO2 and OPI3 (Carman
and Zeimetz, 1996
). Subsequent tests indicated that ino2
mutations also satisfy the genetic screen. This outcome demonstrates
that the assumptions upon which that genetic screen was founded were
imprecise. In retrospect, we now appreciate that this screen points the
way toward identifying novel pathways for bypass Sec14p that involve the combinatorial interface of pathways for PtdCho biosynthesis, turnover, and mechanisms of choline salvage.
Detailed analyses of these mutant phenotypes reveal unexpected aspects
of yeast physiology as these pertain to choline metabolism. Our data
indicate that a significant fraction of the choline generated via
PLD-mediated hydrolysis of PtdCho is excreted from cells. The fate of
this excreted choline determines the activity of the CDP-choline
pathway, which functions to scavenge whatever excreted choline is
recaptured and reincorporates it into PtdCho. The salvage activity of
the CDP-choline pathway fueled by recaptured choline is of primary
significance to the phenotypic effects of the PtdEtn methylation
pathway as these relate to bypass Sec14p. Under conditions where
choline recapture is favored, such as incubation of cells on solid
choline-free medium (I+C
plates) or when the yeast high-affinity choline transporter is functional, choline salvage is efficient and the CDP-choline pathway is
active. That metabolic flux through the CDP-choline pathway obscures
the bypass Sec14p phenotype that would otherwise be associated with
PtdEtn-methylation pathway inactivity.
By contrast, cells grown in choline-free liquid media face a rapid
outward diffusion of excreted choline into the environment. In cultures
with a relatively low cell density, excreted choline rapidly dilutes to
concentrations below the Km of the
transporter (1 µM; Nikawa et al., 1990
). These conditions
do not favor choline recapture, the CDP-choline pathway remains largely
inactive, and PtdEtn-methylation pathway dysfunction supports
Sec14p-independent cell growth and Golgi secretory function.
Inactivation of the choline transporter generates the same condition
and, in that circumstance, the bypass Sec14p phenotype associated with
PtdEtn-methylation pathway defects becomes choline-resistant.
These various data satisfactorily account for why mutations that
inactivate the PtdEtn-methylation pathway were not recovered in the
classical bypass Sec14p mutant selections of Cleves et al.
(1989
, 1991b
). Those selections were not only performed in choline-replete medium at 37°C, but used agar plates for both mutant
selection and phenotypic characterization of mutants. In addition,
directed tests of whether PtdEtn-methylation pathway defects could
effect bypass Sec14p were performed on
I+C
plates at 37°C
(Cleves et al., 1991b
). It is now clear that selection of
bypass Sec14p mutants in
I+C
liquid medium does
yield mutants individually deficient in activity of either the
CDP-choline pathway or the PtdEtn pathway for PtdCho biosynthesis.
Finally, our demonstration that genetic inactivation of either pathway
for PtdCho biosynthesis can result in bypass Sec14p, and that
accelerated rates of Plb1p-driven PtdCho hydrolysis effect partial
suppression of sec14-1ts-associated growth
defects, make a case that PtdCho is intrinsically toxic to Golgi
function in yeast. This finding supports our early model that Sec14p
acts to reduce Golgi PtdCho content (Cleves et al.,
1991a
,b
). This finding also forces us to reconsider our later models
that the CDP-choline pathway is uniquely toxic to Golgi secretory
function solely on the basis of its consumption of a critical metabolic
precursor (i.e., DAG; McGee et al., 1994
; Kearns et
al., 1997
; Rivas et al., 1999
). Elucidation of the
details for why PtdCho is toxic to yeast Golgi function now defines an important area for future study.
| |
ACKNOWLEDGMENTS |
|---|
We are very grateful to JoAnne Engebrecht (State University of
New York, Stony Brook, NY) for the generous gift of SPO14, spo14K
H, and
spo14
N plasmids from which the plasmids we
used were derived. We are also grateful to Fritz Paltauf (Graz,
Austria) for providing a PLB1 clone, and Christiane
Walch-Solimena and Peter Novick (Yale University) for making
YEp(PIK1) available to us. This work was supported by
National Institutes of Health Grant GM44530 awarded to V.A.B.
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FOOTNOTES |
|---|
Corresponding author. E-mail address:
bktis{at}med.unc.edu.
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REFERENCES |
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