|
|
|
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Vol. 13, Issue 10, 3477-3492, October 2002
Department of Biology, Syracuse University, Syracuse, New York 13244
Submitted May 2, 2002; Accepted July 10, 2002| |
ABSTRACT |
|---|
|
|
|---|
Protein phosphatase 2A (PP2A) regulates a broad spectrum of cellular processes. This enzyme is a collection of varied heterotrimeric complexes, each composed of a catalytic (C) and regulatory (B) subunit bound together by a structural (A) subunit. To understand the cell cycle dynamics of this enzyme population, we carried out quantitative and qualitative analyses of the PP2A subunits of Saccharomyces cerevisiae. We found the following: the level of each subunit remained constant throughout the cell cycle; there is at least 10 times more of one of the regulatory subunits (Rts1p) than the other (Cdc55p); Tpd3p, the structural subunit, is limiting for both catalytic and regulatory subunit binding. Using green fluorescent protein-tagged forms of each subunit, we monitored the sites of significant accumulation of each protein throughout the cell cycle. The two regulatory subunits displayed distinctly different dynamic localization patterns that overlap with the A and C subunits at the bud tip, kinetochore, bud neck, and nucleus. Using strains null for single subunit genes, we confirmed the hypothesis that regulatory subunits determine sites of PP2A accumulation. Although Rts1p and Tpd3p required heterotrimer formation to achieve normal localization, Cdc55p achieved its normal localization in the absence of either an A or C subunit.
| |
INTRODUCTION |
|---|
|
|
|---|
Protein phosphatase 2A (PP2A) is a major eukaryotic
serine/threonine phosphatase playing an important role in a wide array of cellular processes, including DNA replication, RNA transcription, RNA splicing, regulation of translation, and cell cycle progression (Mumby and Walter, 1993
; Schonthal, 1998
; Millward et al.,
1999
; Virshup, 2000
; Janssens and Goris, 2001
). PP2A is also an
integral cellular target of invading toxins, parasites, and viruses
(Millward et al., 1999
; Garcia et al., 2000
).
How PP2A can be involved in such a variety of different processes
(i.e., presumably have so many different substrates) is attributable in
great part to its structural plasticity. PP2A is a heterotrimer
composed of a catlytic (C), structural (A), and regulatory (B) subunit;
it is the multiplicity of regulatory subunits that primarily creates
the extensive PP2A heterogeneity. For example, in mammals there are
four separate classes of proteins that can furnish B function
designated PR55 (B), PR61 (B'), PR72 (B"), and PR93/110 (B
).
Multiple isoforms exist within each B-type subunit class, leading to
the potential of >40 different PP2A trimers. (reviewed in Janssens and
Goris, 2001
).
Although the complexity of PP2A in mammalian systems is considerable,
PP2A complexity in S. cerevisiae is far simpler. The catalytic subunits are encoded by PPH21 and PPH22
(Ronne et al., 1991
), the structural subunit by
TPD3 (van Zyl et al., 1989
, 1992
), and only two
regulatory subunits by CDC55 (a B-type) and RTS1 (a B'-type). However, although S. cerevisiae has a much
smaller repertoire of possible PP2A heterotrimers, mutations in the
above-mentioned five genes elicit complex pleiotropic phenotypes. For
example, although deletion of PPH21 or PPH22
alone produces no mutant phenotype, disruption of both generates cells
that are temperature sensitive, have decreased growth rates, and
exhibit cell wall and polarity defects (Ronne et al., 1991
;
Lin and Arndt, 1995
). Cells null for TPD3 are temperature
sensitive, exhibit RNA-processing defects, and become multibudded at
low temperatures (van Zyl et al., 1989
, 1992
). Finally,
genetic analyses have shown that Cdc55p is required for maintaining bud
morphology and proper cytokinesis (Healy et al., 1991
;
Minshull et al., 1996
; Wang and Burke, 1997
; Yang et al., 2000
), whereas Rts1p is necessary for regulating responses to
a variety of stressful cellular conditions, for proper nucleus and
spindle orientation, and for control of cyclin B2 degradation (Shu
et al., 1995
, 1997
; Yang and Hallberg, unpublished data).
The question then becomes, How can such a small number of potentially
different enzyme complexes affect so many different processes? We
considered the answer to lie in previous suggestions (Sontag et
al., 1995
; McCright et al., 1996
) that the role of the
PP2A regulatory subunit might be to determine the cellular site to
which a PP2A trimer is directed. For example, in mammalian cells
certain regulatory subunits are found only in the nucleus or cytoplasm
or associated with the cytoskeleton (reviewed in Janssens and Goris,
2001
). Also, two alternate forms of PP2A B' regulatory subunits in
Schizosaccharomyces pombe accumulate at different cellular
sites (Jiang and Hallberg, 2000
; Le Goff et al., 2001
) and,
more importantly, the sites of highest accumulation change during the
cell cycle (Jiang and Hallberg, 2000
; Le Goff et al., 2001
).
Clearly, the act of sequestering a particular form of PP2A to a
particular cellular site greatly limits the array of targets available
to that PP2A trimer.
In this article, we have designed experiments to test directly the notion that a role of PP2A regulatory subunits is to determine the sites within the cell at which the structural and catalytic subunits become localized. To that end, using S. cerevisiae as our test system, we have created strains expressing single genes encoding green fluorescent protein (GFP)-tagged forms of each of the PP2A subunits and have examined their locations throughout the cell cycle. Also, strains were constructed that expressed a GFP-tagged subunit and at the same time were null for one or more of the other PP2A subunit genes. In this manner, we have been able to establish some of the "rules" by which the cell cycle-specific localization of different PP2A trimers is achieved.
| |
MATERIALS AND METHODS |
|---|
|
|
|---|
Strains, Plasmids, and Media
All strains used were derivatives of W303 and are listed in
Table 1. Plasmids used are listed in
Table 2. Details of strain and plasmid
construction will be provided upon request. Standard yeast protocols
and media were used (Rose et al., 1990
) as were recombinant
DNA methodologies (Sambrook et al., 1989
). For microscopic visualization of fluorescently tagged proteins, cells were grown in YPD
(1% yeast extract, 2% bactopeptone, 2% glucose) or synthetic media
supplemented with the appropriate amino acids and 2% glucose and then
washed and viewed in synthetic media with the appropriate amino acids
and 2% glucose. To arrest cell growth nocodazole or hydroxyurea was
added to a final concentration of 20 µg/ml and 0.2 M, respectively,
for 3 h. In cases when pheromone was used for cell cycle arrest,
cells were grown to OD600 0.25 and
-factor was
added at a final concentration of 1 µg/ml. In all cases, cells were
microscopically examined (either by differential interference contrast
for cell morphology or with 4,6-diamidino-2-phenylindole (DAPI)
staining/fluorescence for nuclear morphology) throughout all
experiments to ensure that cell cycle arrest had occurred and to ensure
that cells were synchronous after arrest. When pheromone was used to
induce shmoo formation, cells were grown to OD600 0.25 and
-factor was added at a final concentration of 5 µg/ml. Yeast transformations were performed using lithium acetate as described
previously (Kaiser et al., 1994
).
|
|
Complementation of Epitope and GFP-tagged Genes
Each epitope-tagged or GFP-tagged gene on a CEN plasmid was transformed into a strain carrying a null allele of the tagged gene. Each strain was tested under a variety of conditions specific for the gene in question to test the functionality of the tagged gene. Tagged genes that fully complemented the null allele were then chromosomally integrated, replacing the endogenous gene. These strains were then assayed under the same conditions used previously to test the functionality of the plasmid-borne tagged gene. Finally, the doubling time of each strain was compared with a wild-type strain. Only those tagged genes that passed all criteria showing wild-type characteristics were used in subsequent studies.
Determining Relative Concentrations of PP2A Subunits
Our approach to quantitation was to generate identically epitope-tagged forms of all five PP2A subunits as a possible means of comparing cellular protein levels. To that end, we generated genes tagged with the epitopes HA or HA3 (influenza virus hemagglutinin), or MYC18 (human c-myc) at either their amino or carboxy terminus. We also generated some genes expressing the same or different epitopes at both termini. Using those genes that passed the complementation tests described above, we then determined the levels of each protein in a given strain by using the appropriate monclonal antibody (12CA5 for HA; 9E10 for MYC) and quantitative analysis of Western blots (see below). We found that regardless of the epitope used, and at which end of the protein to which it was attached, we calculated similar ratios of the various PP2A subunits (Figure 1, A-C; our unpublished data). Finally, to test for the possibility that the presence of epitopes might affect the turnover rates of the tagged proteins, we determined the cellular levels of differently epitope-tagged Tpd3p (Figure 1D) and Cdc55p (our unpublished data) by using antibodies specific for the two proteins. In all cases, the levels of the tagged proteins were essentially identical to those of the untagged forms.
DAPI Staining, Calcofluor Staining, FM4-64 Staining, and Microscopic Analysis
Staining cells with DAPI to determine their cell cycle stage was
carried out as described previously (Pringle et al.,
1989
). rhoO cells were used to
visualize nuclei. The rhoO strains MSG92
and MSG96 were generated by treating cells with ethidium bromide as
described previously (Guthrie and Fink, 1991
). FM4-64 staining of
vacuoles was carried out as described previously (Vida and Emr, 1995
).
Visualization of cells by differential interference contract microscopy
was carried out on an Eclipse TE300 microscope (Nikon, Tokyo, Japan).
Fluorescence of all cells was visualized on a BX60 microscope (Olympus,
Tokyo, Japan) by using the appropriate filter set. Visualization of GFP
or DAPI fluorescence was carried out using an enhanced green
fluorescent protein (EGFP) or DAPI filter set (Chroma Technology,
Brattleboro, VT), unless otherwise noted. Visualization of FM4-64 was
carried out using the HQ:Texas Red filter set (Chroma Technology).
Visualization of cyan fluorescent protein (CFP) fluorescence was
carried out using the cyan GFP v2 filter set (Chroma Technology). The
two-color imaging excitation and emission of fluorescent proteins was
performed as described previously (Pearson et al., 2001
).
Images were acquired using a charge-couple device camera (Olympus) with
Magnafire software (Olympus) and analyzed using Photoshop (Adobe
Systems, Mountain View, CA). Cells were prepared, sealed, and
photographed in an agarose chamber for continuous time analysis of
single cells as described previously (Tran et al., 2001
).
Protein Isolation, Electrophoresis, and Western Analysis
The extraction of total proteins by solubilizing cells in 1.8 M
NaOH-5%
-mercaptoethanol, the separation of proteins by SDS-PAGE, and procedures used for Western analysis have been described previously (Shu and Hallberg, 1995
; Shu et al., 1997
). Protein extracts
containing MYC18 epitope-tagged subunits were
separated using a 7% SDS-PAGE; all other protein extracts were
separated using a 10% SDS-PAGE. The mouse monoclonal antibodies 12CA5
(Roche Applied Science, Indianapolis, IN) and 9E10 (Zymed
Laboratories, South San Francisco, CA) were used to detect HA
epitope-tagged proteins and MYC epitope-tagged proteins, respectively.
Cdc28p and Pho85p were detected using the mouse PSTAIR monoclonal
antibody (Sigma-Aldrich, St. Louis, MO). Tpd3p was detected using the
rabbit anti-Tpd3p polyclonal antibody at 1:2000 (van Zyl et
al., 1992
). Cdc55p was detected using the rabbit anti-Cdc55p
polyclonal antibody at 1:3000 (Wei et al., 2001
).
Visualization of protein concentration was done using alkaline
phosphatase-conjugated secondary antibodies as described previously
(Shu and Hallberg, 1995
) or by using horseradish peroxidase-conjugated
secondary antibodies and enhanced chemiluminescence as described
previously (Jiang and Hallberg, 2000
). When using enhanced
chemiluminescence (Figure 1, A-C), multiple exposures of every Western
blot were obtained both on film and by a Digital Science Image Station
440CF (Eastman Kodak, Rochester, NY). Signal intensities were
quantified using Kodak Digital Science 1D software. The quantified
signals from multiple exposures of each experiment were used to obtain
the mean relative amounts and SDs. In each case, the value obtained
from the signal of Tpd3p was divided into the value for the other
subunits. A correction was then made for the relative masses of the
different proteins to make comparisons at the level of the number of
molecules. The mean and SD for the relative protein amounts were
obtained using Exel (Microsoft, Redmond, WA).
Chromatin Immunoprecipitation
Chromatin immunoprecipitation was performed as described
previously (Meluh and Broach, 1999
) with the following modifications. The percentage of cells exhibiting Rts1p-GFP or GFP-Tpd3p localized at
kinetochores was enriched in hydoxyurea-arrested cells (our unpublished data). Cells were grown at 25°C to mid-exponential growth, arrested in 0.2 M hydoxyurea for 3 h at 25°C (25°C
lysates) or for 1.5 h at 25°C, and then shifted to 37°C for
1.5 h (37°C lysates). Cells were fixed at 30°C in 1%
formaldehyde for 2 h. The lysate from broken cells was sonicated
six times at 30% for 10 s (chromatin sheared to an average size
of 500 base pairs). The lysate was then centrifuged at 15,000 rpm for 5 min to remove debris, transferred to a new tube, and incubated
overnight at 4°C with the appropriate antibody (1 µg of 3F10
anti-HA; Roche Applied Science; and 8 µg of 9E10 anti-MYC; Zymed
Laboratories). To recover coimmunoprecipitated DNA, protein A-Sepharose
beads were suspended in 175 µl of TE and 25 µl of elution buffer
and incubated at 37°C for 3 h. The supernatant was collected and
beads were suspended in 300 µl of elution buffer at 37°C for 2-3
h. To reverse cross-linking, lysates were incubated in 0.2 M NaCl at
65°C overnight; 1/20 of the immunoprecipitate and 1/40 of total chromatin were used as template for 21 cycles of PCR reactions with
REDTaq DNA polymerase (Sigma-Aldrich). CEN4 and
URA3 primers were used as described by He et al.
(2001)
.
| |
RESULTS |
|---|
|
|
|---|
PP2A Subunit Stoichiometry
Before investigating the dynamics of PP2A subunits during the cell cycle, we felt it necessary to determine their relative stoichiometries. To that end, we constructed strains chromosomally expressing PP2A-encoding genes having either HA or MYC epitopes affixed to the C or N terminus (see MATERIALS AND METHODS). Each gene construct used complemented its respective null allele and, as shown below, the cellular levels of the tagged proteins was, in all cases examined, indistinguishable from the levels of their untagged, wild-type counterparts.
We first compared three strains expressing chromosomally integrated
HA3-TPD3 (MSG41),
HA3-CDC55 (MSG36), and
RTS1-HA3 (YS69). Figure
1A shows some of the data generated and a
summary of the quantitative measurements. Normalizing protein levels of
Tpd3p to 1.00 and correcting for mass differences, we calculated the relative amounts of Cdc55p and Rts1p to be 0.26 ± 0.06 and
3.58 ± 0.93, respectively. When strains expressing
MYC18-tagged forms of the same three genes were
similarly analyzed (Figure 1B), the calculated ratios of the three
proteins were 1.00 Tpd3p:0.29 ± 0.05 Cdc55p:2.80 ± 0.68 Rts1p. These data indicate that early log phase cells contain 10-14
times more Rts1p than Cdc55p. As a test of that prediction, we made
serial dilutions of protein extracts of each of the strains
expressing both identically tagged forms of Rts1p and Cdc55p and then
carried out quantitative Western analyses. A 1:10 to 1:12 dilution of
the Rts1p-HA3 and
Rts1p-MYC18 protein extracts gave approximately
the same intensity as the signal from HA3-Cdc55p
and MYC18-Cdc55p extracts, respectively (our
unpublished data). Thus, there is indeed ~12 times more Rts1p than
Cdc55p in early log phase cells.
|
We then analyzed in a similar manner HA-Tpd3p (MSG39), HA-Pph21p
(LH333), and HA-Pph22p (LH337). These results showed (Figure 1C) that
for every Tpd3p there was 3.41 ± 0.53 Pph21p, and 3.30 ± 0.57 Pph22p. Our finding an equivalence of Pph21p and Pph22p confirms
previous reports (Di Como and Arndt, 1996
). Finding an excess of
catalytic subunits relative to Tpd3p was not unexpected given that both
Pph21p and Pph22p can assemble into other complexes (Di Como and Arndt,
1996
; Jiang and Broach, 1999
).
It was possible that a tagged protein could have an altered turnover rate and hence affected the level of that protein relative to a wild-type form. We thus compared the protein levels of a number of differently tagged subunits with the level of an untagged subunit and found that the cellular levels of amino-terminal-tagged Tpd3p, carboxy-terminal-tagged Tpd3p, and Tpd3p tagged at both termini were all similar to the level of untagged Tpd3p (Figure 1D). Similar results were obtained using an anti-Cdc55p antibody (courtesy of E. Ogris) and variously tagged CDC55 constructs (our unpublished data). Thus, degradation rates of the epitope-tagged proteins were not altered.
We concluded that 1) epitope-tagged subunits can yield an accurate measurement of relative protein abundance; 2) there is a significant excess of both regulatory (B plus B') subunits and catalytic (C) subunits relative to Tpd3p (the A subunit); 3) at no time can all Rts1p be a part of a PP2A trimer; 4) at any given time a maximum of one-seventh of all catalytic subunits can be associated with Tpd3p; and 5) some mechanism must operate to permit Cdc55p to effectively compete with Rts1p for binding to the AC dimer.
PP2A Subunit Localization Methodology
For localization studies we used the same strategy used for the
quantitation studies, namely, GFP tag each PP2A gene, replace the
chromosomal gene with the GFP-tagged version (with its normal promoter), and use only those strains exhibiting wild-type behavior. We
then used two methods to assess whether there were any cell cycle-dependent localizations of PP2A subunits. In the first case, we
grew cells in YPD to early log phase and microscopically examined a
representative sample of all cells in the asynchronous population. Cells were divided into classes based on cell cycle morphology: nonbudded, small/medium budded, large budded with one nucleus, and
large budded with two nuclei. Each class was scored for either having
or lacking a characteristic localization pattern of a particular subunit. The percentage of cells in each class showing the trademark localization pattern was calculated. Alternatively, we grew cells to
early exponential phase in YPD, arrested them with nocodazole or
-factor for 3 h, washed them into fresh medium, and then
photographed cells at 15-min intervals over a 3-h period. Quantitation
of cellular localization patterns of PP2A subunits was the same as with
the first method. Both methods generated essentially the same results. Because we photographed cells to score localizations, in each photograph a certain percentage of cells with a trademark localization pattern was not in focus. Thus, our reported percentages for
localization are conservative and never reach 100%.
PP2A Subunit Localizations
GFP-Tpd3 was found in the cytoplasm and nucleus of cells in all
cell cycle stages (Figure 2A, i and ii).
It was seen concentrated in a crescent shape at the bud tip of
small/medium budded cells and in cells with the smallest visible bud
(Figure 2A, closed arrowheads). In small/medium budded cells, GFP-Tpd3p
localized to a bright spot (large arrows) in or adjacent to the
nucleus. This spot appeared in cells in which the nucleus had migrated toward the bud neck, but before nuclear division was visible. We
assumed it most likely to be at the spindle pole body (SPB) and
attempted to determine whether GFP-Tpd3p colocalized with CFP-Spc42, a
SPB component (Donaldson and Kilmartin, 1996
). Unfortunately, due to
the strong nuclear signal of GFP-Tpd3p, we were unable to confirm or
disprove this assumption. However, we later show that Rts1p does, in
fact, colocalize with Spc42p and that the localization of Tpd3p to this
perinuclear spot requires the presence of Rts1p (see below).
|
GFP-Tpd3p also accumulated at the bud neck of post-telophase cells (Figure 2, A and B). This localization changed (Figure 2B, i-iv) as cells progressed from mitosis through cytokinesis. (To determine the kinetics of localization changes we used continuous microscopy of single cells; see MATERIALS AND METHODS.) Tpd3p was first found on the daughter side of the bud neck (Figure 2B, i) and then at the neck as two rings (Figure 2B, ii). Just before cytokinesis, Tpd3p was concentrated in a tight single band at the juncture between the mother and bud (Figure 2B, iii), and then, after cell separation, it was seen at the new cell wall of just one of the postdivisional cells (Figure 2B, iv). Finally, GFP-Tpd3p became localized at the presumptive bud site of one of the newly formed nonbudded cells (Figure 2A, iii, small arrow).
Because some proteins that are known to localize to newly emerging buds
also show accumulation at the polarized tips of premating cells
("shmoos"), we asked whether Tpd3p also exhibited this behavior. We
found that essentially all cells treated with mating pheromone, when
examined after 60 and 120 min, had GFP-Tpd3p localized as a crescent at
the shmoo tip. Consistent with this finding is the fact that
tpd3
cells treated with pheromone have abnormal mating projections and display a reduced mating efficiency (our unpublished data). Thus, it is most likely that localized PP2A activity is required
for proper polarized growth in both normal cell division and in the
mating process.
Rts1p-GFP appeared in the cytoplasm and nucleus in all cell cycle
stages (Figure 3A, i and ii), but the
relative intensity of the nuclear signal was far less pronounced than
the nuclear signal of GFP-Tpd3p (Figures 2A and 3A). Rts1p-GFP was
localized as a bright spot (large arrows) in or adjacent to the nucleus in 70% of small/medium budded cells (Figures 3A and 6). As with Tpd3p,
perinuclear localization of Rts1p-GFP occurred after the nucleus had
migrated toward the bud and before visible nuclear division. Rts1p-GFP
was also seen at the bud neck (open arrowheads) in 45% of
post-telophase cells (Figures 3A and 6). Rts1p-GFP localization at the
bud neck was dynamic and similar to the GFP-Tpd3p localization (Figure
3B, i-iii). As before, to determine the kinetics of its localization
at the bud neck, we followed Rts1p in single cells. Rts1p-GFP was first
seen on the bud side (Figure 3B, i); then in the middle, occasionally
as two rings (Figure 3B, ii); and finally, as a single band between the
mother and daughter (Figure 3B, iii). Unlike Tpd3p, however, Rts1p-GFP
was never seen at the bud neck in cells in the latest stages of
cytokinesis, in cells that had just completed cytokinesis, or at new
bud sites.
|
To determine whether Rts1p-GFP was localized at a SPB, we constructed a
strain (MSG136) expressing both RTS1:GFP and
CFP:SPC42 and found that Rts1p-GFP and CFP-Spc42p
colocalized after SPBs migrated toward the bud but before the
duplicated SPBs begin to separate (Figure 3C, i-iii). At this time,
centromeres are proximal to the SPBs (Goh and Kilmartin, 1993
; Jin
et al., 1998
). Given that the Rts1p-GFP spot often seemed
significantly larger than the CFP-Spc42p spot, we considered that
Rts1p-GFP might actually be localized at the kinetochores
near the SPBs. This indeed seemed to be the case. As the SPBs
separated, Rts1p-GFP was found between the two SPBs as a single dot
(Figure 3C, iv and v) or in a bilobed pattern (Figure 3C, vi) in a
manner previously described for kinetochore components (He
et al., 2000
, 2001
). As the SPBs moved further apart,
Rts1p-GFP was then seen as two dots between the SPBs (Figure 3C, vii),
a pattern also seen for bone fide kinetochore proteins (He
et al., 2000
, 2001
). The concentration of Rts1p in the
nucleus remained relatively high throughout karyokinesis, and it was
only after complete nuclear separation that Rts1p then began its
accumulation at the bud neck.
Although the pattern of Rts1p localization was highly suggestive of a
kinetochore association, to test that directly we performed a chromatin immunoprecipitation (ChIP) analysis. NDC10
encodes a protein that is part of the CBF3 complex that is required for kinetochore assembly and maintenance (Goh and Kilmartin,
1993
). In an ndc10-1 strain, the kinetochore
complex disassembles at 37°C (Goh and Kilmartin, 1993
). We
constructed strains carrying both an ndc10-1 gene and an
RTS1:HA3 gene and then determined whether
an immunoprecipitation of HA-tagged Rts1p would coprecipitate chromatin-associated centromeric DNA (CEN4) when the
kinetochore was intact (at 25°C) but not when it had been
disassembled (at 37°C). This turned out to be the case (Figure 3D).
In negative controls in which the Rts1p was not tagged, no centromeric
DNA was precipitated. As a control for the specificity of the DNA precipitated, we examined the precipitate for a DNA sequence that is
not present at the centromere (URA3) and found none (Figure 3D). Similar results were obtained using
MYC18-Tpd3p (our unpublished data). Therefore,
Rts1p-HA3 and MYC18-Tpd3p
are both bound to centromeric DNA in a CBF3-dependent manner.
As with both Rts1p and Tpd3p, GFP-Cdc55p localized to the nucleus in
>90% of all cells, albeit at a reduced intensity compared with the
other two. GFP-Cdc55p localized to the
bud tip of the smallest visible buds, to the bud tip of small/medium
budded cells, and to some buds that were nearly as large as the mother
(Figure 4A, closed arrowheads). It also
localized to the bud neck (Figure 4A, open arrowheads) in 53% of
post-telophase cells (Figure 6). GFP-Cdc55p was seen on the daughter
side of the bud neck (Figure 4B, i), as a ring at the bud neck (Figure
4B, ii), as two rings at the bud neck (Figure 4B, iii), and at the new
cell wall of one of the two buds that were completing cytokinesis
(Figure 4B, iv). Finally, GFP-Cdc55p localized to what seemed to be the
presumptive bud site and/or the postcytokinesis new cell wall of cells
completing or just having completed cytokinesis (Figure 4A, small
arrows). Thus, it showed an identical localization pattern to that
observed for Tpd3p.
|
GFP-Cdc55p also showed significant localization at what seemed to be
vacuoles in cells of all cell cycle stages (Figure 4A). FM4-64 is a
vital stain that stains the vacuolar membrane and can be visualized
with fluorescence microscopy (Vida and Emr, 1995
). When
GFP-CDC55 cells were stained with FM4-64, GFP-Cdc55p colocalized with the stain in cells in all cell cycle stages (Figure 4C). A closer examination of GFP-Tpd3p localization showed a relatively weak signal at vacuolar membranes as well (our unpublished data). Thus,
some PP2A is vacuolar membrane associated throughout the cell cycle.
Because GFP-Cdc55p, like Tpd3p, localized to the polarized bud tip we examined GFP-Cdc55p localization in pheromone-treated cells. In cells treated with mating pheromone for 60 or 120 min, GFP-Cdc55p also localized to the shmoo tip in a pattern identical to that shown by Tpd3p (Figure 4D).
Finally, we examined the subcellular localization of Pph21p and Pph22p.
Initially, we determined Pph21p and Pph22p localization by
immunofluorescence with a strain expressing an HA-tagged
PPH21 or PPH22 that fully complemented the
pph21
pph22
(CY1145) null phenotype. The
immunofluorescence data showed that Pph21p and Pph22p were uniformly
distributed in the cytoplasm and highly concentrated in the nucleus
(our unpublished data). We then GFP tagged PPH21 and
although the GFP-PPH21 construct did not fully complement
its null allele (our unpublished data), the distribution of Pph21p gave
similar results to our immunofluorescence experiments. In addition to
nuclear and cytoplasmic localization, GFP-Pph21p was also observed at
the bud tip of small and medium budded cells (Figure
5, closed arrowheads), as a faint
perinuclear spot (Figure 5, arrows), and at the bud neck of
post-telophase cells (Figure 5, open arrowheads). However, localization
of Pph21p at bud tips, the bud neck, or the kinetochore was
rarely observed, but because GFP-PPH21 did not complement
the null allele, these observations are not necessarily that
surprising.
|
Tpd3p Is Dependent on B and C Subunits to Establish and/or Maintain Normal Localization Patterns
To begin to understand the "rules" regarding the necessity, or lack thereof, of particular subunits in directing the localization of other PP2A subunits, we first examined the effects of deleting individual PP2A subunit-encoding genes on the localization of Tpd3p. In all cases, we developed strains encoding GFP-Tpd3p and also deleted for one of the other PP2A-encoding genes. (It should be emphasized that if we find abnormal accumulations of a particular subunit, we cannot distinguish between the loss of targeting of that subunit or the inability to maintain an accumulation at its cellular location.)
In cdc55
cells (MSG81) GFP-Tpd3p maintained its
cytoplasmic distribution and nuclear localization in all cell cycle
stages, but the relative intensity of the nuclear localization was
diminished (Figure 7A). Normal
localization to the kinetochore (large arrows) in
small/medium budded cells occurred, and although bud neck localization was still observed (open arrowheads), it was at a reduced frequency (42 vs. 61%) in post-telophase cells (Figure 7, A and E). Most strikingly,
in cdc55
cells, GFP-Tpd3p was rarely found at bud tips,
being seen in <5% of small/medium budded cells compared with 70% in
wild-type cells (Figure 7E).
|
|
In rts1
cells (MSG68) GFP-Tpd3p was still found in the
cytoplasm, but there was a sharp increase in its relative nuclear staining (Figure 7, B and E). Although it was still found at the bud
tips of small/medium budded cells and at the bud neck of post-telophase cells, GFP-Tpd3p was there at a reduced frequency and a decreased intensity. In contrast, no GFP-Tpd3p was seen at the
kinetochores in these cells (Figure 7, B and E). Thus,
there is an absolute requirement for Rts1p for Tpd3p localization at
the kinetochore, and although Tpd3p can still be directed
to the bud neck and bud tip in the absence of Rts1p, the maintenance of
wild-type levels at these locales also requires the presence of Rts1p.
In cells in which both CDC55 and RTS1 were disrupted, Tpd3p was never found at the bud neck, the emerging bud periphery, or the kinetochore (our unpublished data). It was, however, more concentrated in the nucleus. This is consistent with the localization patterns found in the single knockout strains and clearly indicates that Tpd3p bud neck localization is directed by both Cdc55p and Rts1p. Whether the initial timing of Tpd3p localization and the specific sites of accumulation directed by the B and B' subunits differ remains to be determined.
In strains in which one or the other of the C-encoding subunits was
deleted, the results were the same: GFP-Tpd3p localized to the
kinetochore, the bud neck, and the emerging bud tips,
albeit at a reduced frequency and usually at a reduced intensity
(Figure 7, C and E). In contrast, in a pph21
pph22
strain, localization of GFP-Tpd3p to these same three sites was
essentially abolished, although a strong nuclear signal was still
evident along with a uniform cytosolic staining (Figure 7D). These data
would indicate that if a PP2A heterotrimer cannot be formed, Tpd3p
cannot be directed to, and/or be maintained at, any of the cell
cycle-specific sites at which it normally accumulates.
One possible explanation for the preceding results would be that Tpd3p is more subject to ectopic degradation when other subunits are not present. The changes in localization patterns could then be the result of selective degradation of Tpd3p rather than the loss of localization. To address this possibility, we measured, using quantitative Western analyses, the levels of MYC18-Tpd3p in strains deleted of RTS1, CDC55, PPH21, PPH22, and PPH21 PPH22, comparing them with a wild-type strain. Because the levels of Tpd3p in all these strains were essentially the same (our unpublished data), this indicated that the differences in staining patterns of GFP-Tpd3p in the deletion strains must be due to faulty localization processes.
Rts1p Is Dependent on A and C Subunits to Maintain Its Localization
As we had done with GFP-Tpd3p, we asked which PP2A subunits were
required for Rts1p-GFP to achieve and maintain normal
localization patterns. We first determined whether the loss of Cdc55p
had an effect on Rts1p localization and found that the cellular pattern of Rts1p-GFP was both quantitatively and qualitatively similar to that
seen in wild-type cells (Figure 8, A and
E). In contrast, when we examined tpd3
cells expressing
Rts1p-GFP (MSG100) it was clear that the correct localization of Rts1p
was dependent on the presence of Tpd3p. In the tpd3
strain, Rts1p-GFP lost virtually all of its nuclear,
kinetochore/spindle and bud neck localization, and became
generally distributed throughout the cytosol in all cell cycle stages
(Figure 8, B and E).
|
As with GFP-Tpd3p, Rts1p-GFP showed partial dependence on Pph21p
and Pph22p to maintain its normal localization patterns. The
localization of Rts1p-GFP seemed similar in either deletion strain (our
unpublished data). When either C subunit was absent, Rts1p-GFP
maintained all of its trademark localization patterns, but each pattern
was decreased in intensity (Figure 8C). Also, the percentage of cells
displaying kinetochore/spindle and bud neck localization
patterns was reduced to varying levels (Figure 8E). When both C
subunits were deleted, all normal Rts1p localization was affected
(Figure 8D). In pph21
pph22
(MSG129) cells, Rts1p-GFP appeared as it did in tpd3
cells (MSG100), i.e., it was
generally distributed throughout cells in all cell cycle stages. The
percentage of cells exhibiting the trademark localization patterns was
reduced to <5% (Figure 8E). Thus, for Rts1p to accumulate at
kinetochores and the bud neck, the formation of a complete
heterotrimer is required.
As before, we examined the concentration of
Rts1p-MYC18 in various strains lacking PP2A
subunits to determine whether the Rts1p-GFP localization changes in
deletion strains were due to a change in Rts1p concentration.
RTS1-MYC18 was expressed on a CEN plasmid in rts1
(YS96),
rts1
tpd3
(AS11), rts1
cdc55
(HFY3), rts1
pph21
(AS3), rts1
pph22
(AS5), and
rts1
pph21
pph22
(AS8) cells. Quantitative Western
analysis showed that the concentration of
Rts1p-MYC18 in each of the deletion strains was
indistinguishable (our unpublished data), indicating that the change in
localization patterns of Rts1p-GFP in the various deletion strains
could not be a consequence of altered Rts1p stability.
Cdc55p Can Be Localized Independently of Other PP2A Subunits
To determine whether GFP-Cdc55p was dependent on Tpd3p to maintain
its localization, we examined cdc55
tpd3
cells (AS13) expressing GFP-CDC55 on a CEN plasmid (MSG369).
Surprisingly, cells lacking TPD3 maintained GFP-Cdc55p at
all trademark subcellular locations, albeit at reduced frequencies and
intensities (Figure 9, A and F). Nuclear
localization of GFP-Cdc55p was greatly reduced (Figure 9F). Similarly,
GFP-Cdc55p localization at the bud tip (closed arrowheads) in
small/medium budded cells decreased from 61 to 27% and at the bud neck
(open arrowheads) of post-telophase cells from 53 to 23% (Figure 9, A
and F). Nonetheless, unlike GFP-Tpd3p and Rts1p-GFP, GFP-Cdc55p could
still maintain some normal localization whether a heterotrimer could be
assembled or not. This would indicate that there is decodable targeting information within Cdc55p itself sufficient for it to achieve and
maintain its correct localization at the emerging bud tip and bud neck.
|
To see whether GFP-Cdc55p localization was in any way affected by the
presence of Rts1p, we expressed GFP-CDC55 from its
endogenous promoter on a CEN plasmid (MSG369) in
cdc55
rts1
(HFY3) and cdc55
rts1
tpd3
(AS21) strains. Although deletion of CDC55 had essentially
no effect on Rts1p localization, the reverse was not true. GFP-Cdc55p was still seen at the bud tip and at the bud neck of small/medium budded cells but at considerably reduced frequencies (Figure 9, B, C,
and F). Thus, like Rts1p-GFP, GFP-Cdc55p can achieve its normal
localization independent of the other B subunit but at a reduced
efficiency and frequency. How the absence of Rts1p can affect the
relative distribution of Cdc55p in the cell remains to be determined,
but we believe it likely to be related to the dramatic asymmetry in the
concentrations of these two proteins.
Normal Cdc55p localization also exhibited a partial dependence on the C
subunit. In both pph21
(MSG144) and pph22
(MSG146) strains, Cdc55p localization seemed the same (our unpublished data); therefore, only pph21
cells are shown (Figure 9D).
GFP-Cdc55p was localized in the nucleus in >90% of all cells (Figure
9F). However, GFP-Cdc55p localization at the bud tip (closed
arrowheads) was decreased from 61 to 49% in pph21
cells
and to 36% in pph22
(Figure 9, D and F). Similarly,
GFP-Cdc55p localization to the bud neck (open arrowheads) decreased
from 53% in wild-type cells to 37% in pph21
cells and
36% in pph22
cells (Figure 9, D and F).
When both C subunits were deleted the percentage of cells exhibiting both bud tip and bud neck localizations decreased to 18 and 20%, respectively (Figure 9, E and F). The GFP-Cdc55p localization that remained at these sites was decreased in intensity compared with wild-type cells, and the bud neck localization was often fragmented and incomplete. Nonetheless, unlike Tpd3p and Rts1p, Cdc55p could be targeted to and accumulate at its normal sites whether or not a catalytic subunit was present in the cell. Thus, the formation of a heterotrimer is unnecessary for localization of Cdc55p. It may well be that the decreased frequency and intensity of localizations seen reflects the necessity of heterotrimer formation for the maintenance of localizations.
As was done with Tpd3p and Rts1p, we then determined the concentration
of MYC18-Cdc55p in various PP2A subunit deletion
strains: cdc55
(YS95), cdc55
rts1
(HFY21), cdc55
tpd3
(AS13), cdc55
pph21
(HFY17), cdc55
pph22
(HFY19), and
cdc55
pph21
pph22
(HFY21). As with the previous two
subunits examined, MYC18-Cdc55p concentrations were similar in all strains (our unpublished data). Thus, as with the
other two PP2A subunits, the change in localization of GFP-Cdc55p in
various PP2A deletion strains was not due to a change in Cdc55p concentration.
| |
DISCUSSION |
|---|
|
|
|---|
Quantitative Studies
Although our primary goal in this work was to answer the question
of whether PP2A regulatory subunits determined the cellular localization of PP2A holoenzymes, our preliminary analyses of subunit
quantitation gave unexpected results. Whereas the cellular levels of
all the individual subunits varied little throughout the cell cycle,
consistent with the finding that mRNA levels for all the PP2A subunits
also vary little (Spellman et al., 1998
), they were,
surprisingly, far from equimolar. The total number of regulatory
subunits (Rts1p plus Cdc55p) per cell was approximately 4 times that of
the A subunit (Tpd3p). Similarly, there was 8 times the number of
catalytic subunits (Pph21p plus Pph22p) relative to Tpd3p. Clearly, A
subunit binding sites must be limiting for both catalytic as well as
regulatory subunits. This indicates that some mechanism(s) must exist
to regulate the formation of the various trimers. As Pph21p and Pph22p
become incorporated into other complexes (Di Como and Arndt, 1996
), the
excess of these subunits relative to Tpd3p is understandable, but,
again, the control of their partitioning must be regulated in some
manner. To date, there have been no reports that indicate that either Rts1p or Cdc55p assemble into other complexes.
The fact that we see no changes in levels of any PP2A subunit proteins
in cells unable to express another subunit gene indicates that the
stability of the individual proteins is not dependent on whether a
particular subunit is or is not in a PP2A complex. Recently,
Silverstein et al. (2002)
reported that in Schneider S2
cells the absence of the A or C subunit led to the degradation of
regulatory subunits and the absence of the regulatory subunits led to
the degradation of the A and C subunits. In contrast to this report and
in agreement with our findings, Wu et al. (2000)
, Evans and
Hemmings (2000)
, and Wei et al. (2001)
found that subunit stability was not linked to heterotrimer formation in yeast. In addition, our GFP data clearly show that PP2A-GFP fusion proteins persist when PP2A complexes are unable to form. Thus, it seems there is
a difference between the two systems with respect to this regulatory mechanism.
In mammalian cells, there is good evidence that a significant pool of
AC dimers can be present in the cytosol (Kremmer et al.,
1997
). We have not addressed experimentally whether such a situation
also occurs in S. cerevisiae. Although certainly a possibility that needs to be addressed, given the vast excess of B and
C subunits relative to Tpd3p in this organism, how such a subpopulation
might be maintained would clearly be problematic.
Qualitative Analyses
Our data show that Rts1p and Cdc55p do indeed determine where in
the cell Tpd3p, and by inference, Pph21p and Pph22p, accumulate during
the cell cycle. Although we could not directly test the effects of B
subunit deletion on C subunit localization, the fact that Tpd3p is the
only A subunit in S. cerevisiae, and that the association of
B and C subunits absolutely requires the presence of Tpd3p (Di Como and
Arndt, 1996
; Shu et al., 1997
), its location should define
the location of PP2A heterotrimers. Furthermore, the cellular sites at
which Rts1p and Cdc55p accumulate are consistent with the mutant
phenotypes of RTS1-null and CDC55-null strains. For example, at elevated temperatures, rts1
cells
accumulate as large budded 2N cells with short spindles, many of which
are not correctly oriented (Shu et al., 1997
; Hallberg,
unpublished data). It was shown (Bloom, personal communication) that
these cells display a delayed acquisition of cytoplasmic dynein at
their SPBs, consistent with the spindle orientation defect. Similarly, a mutation in RTS1 is synthetically lethal with a
CIN8 knockout (Hildebrand and Hoyt, unpublished data).
Because CIN8 encodes a microtubule motor protein required
for spindle elongation and localizes to kinetochores and
the mitotic spindle (Hoyt et al., 1992
; He et
al., 2001
), this correlates with the kinetechore localization of
Rts1p. Finally, rts1
cells are deficient in the splitting of the septin rings just before cell separation (Dobbelaere, Gentry, Hallberg, and Barral, unpublished data), indicating a role for Rts1p in
this process. With regard to CDC55, cells null for this gene
show a random budding pattern (Yang and Hallberg, unpublished data),
they display bud morphology defects (Healy et al., 1991
), they exhibit septation defects (Healy et al., 1991
), septin
deposition patterns are aberrant (our unpublished data), and they have
deficiencies in degrading Swe1p (Yang et al., 2000
). Because
Swe1p is thought to be degraded at the bud neck (McMillan et
al., 1999
; Shulewitz et al., 1999
), this again is
consistent with bud neck localization of Cdc55p. One Cdc55p
localization for which we have yet to identify a mutant phenotype is
that at the vacuolar membrane.
In most cases examined, the selective accumulation of a particular subunit absolutely required the presence of a member of each of the other two classes of subunits. For example, selective Tpd3p accumulation at any site required at least one catalytic and one regulatory subunit to be present in the cell. Furthermore, and of primary importance to the hypothesis being tested herein, selective accumulation seen for Tpd3p in either a CDC55-null or RTS1-null strain reflected only the accumulation sites associated with the particular regulatory subunit still present in the cell. Similarly, Rts1p showed no SPB/kinetechore or bud neck accumulation if either Tpd3p or both of the catalytic subunits were absent. Thus, in all these cases, the capacity to assemble a complete trimer is necessary to achieve selective accumulation at different sites within the cell. Although it may be tempting to hypothesize that the targeting information for these trimers is composed of "bits" from all three subunits, we cannot rule out the alternative explanations that, for example, Rts1p contains the targeting information, but that without an interaction with the other subunits this information is masked, or that targeting of Rts1p takes place but that stable accumulation at a particular site requires a complete trimer. This remains to be resolved.
In contrast, Cdc55p can be targeted to and be accumulated at its normal cellular sites without requiring the presence of either an A subunit or C subunit, albeit that this localization seems not to be as stable as PP2ACdc55p localization. This means that, theoretically, Cdc55p could be prerecruited to a site in the cell and only later would an AC dimer, should such entities exist in yeast, assemble with it. It remains to be determined whether that, in fact, is what happens in vivo. It may well be that although the targeting information for all trimers resides in their attached regulatory subunits, only in the case of Cdc55p can the regulatory subunit semi-stably accumulate at its normal sites without its associated partners.
Whatever the identity of the cis-acting targeting
information carried by either of the regulatory subunits, be it
necessary and sufficient or just necessary but not sufficient, it must
be fairly complex. For instance, with regard to Rts1p, there has to be
information that targets Rts1p from the cytosol to the nucleus, to the
kinetechore, out of the nucleus, and then to the bud neck. In all these
cases, there will presumably be different trans-acting proteins with which the regulatory subunits interact. Although most of
these will be positive effectors of targeting, it may be that some
trans-acting factors play a negative role, e.g., they tether
Rts1p, thereby preventing an association with Tpd3p. The state of
phosphorylation of Rts1p (Shu et al., 1995
), which we now
know can be regulated during the cell cycle (our unpublished data), may
be important in altering its interactions with either of these classes
of trans-acting factors.
Our localization results, in combination with genetic data currently available or newly generated, should now make it possible to ask whether a particular protein, identified as functionally interacting with Rts1p or Cdc55p, actually colocalizes with either of these B subunits. Given the ever-increasing power of the in situ imaging of cellular proteins, identifying likely potential substrates for particular PP2A holoenzymes by using this approach would seem to us quite promising.
| |
ACKNOWLEDGMENTS |
|---|
We thank those who kindly supplied strains, plasmids, and antibodies: K. Arndt, J. Bachant, J. Broach, P. Kane, E. Ogris, P. Sorger, and D. Virshup. We thank D. Amberg, S. Erdman, E. Hallberg, W. Jiang, P. Kane, J. Mannion, A. Smuckler, P. Tran, and H. Yang for advice and technical assistance. The critical review of this work and helpful suggestions by the Syracuse University genetics group and UMU-Syracuse/Syracuse University yeast journal club were also greatly appreciated. This work was supported by National Science Foundation grants MCB-9603733 and MCB-0113355.
| |
FOOTNOTES |
|---|
* Corresponding author. E-mail address: hallberg{at}syr.edu.
Article published online ahead of print. Mol. Biol. Cell 10.1091/mbc.02-05-0065. Article and publication date are at www.molbiolcell.org/cgi/doi/10.1091/mbc.02-05-0065.
| |
REFERENCES |
|---|
|
|
|---|