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Vol. 13, Issue 10, 3627-3645, October 2002


*Molecular Medicine Unit, University of Leeds, Clinical Sciences
Building, St. James's University Hospital, Leeds LS9 7TF, United
Kingdom; and Departments of
Biological Sciences and
§Chemistry and Biochemistry, University of Notre Dame,
Notre Dame, Indiana 46556
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ABSTRACT |
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EB1 is a microtubule tip-associated protein that interacts with
the APC tumor suppressor protein and components of the dynein/dynactin complex. We have found that the C-terminal 50 and 84 amino acids (aa) of EB1 were sufficient to mediate the interactions
with APC and dynactin, respectively. EB1 formed mutually exclusive
complexes with APC and dynactin, and a direct interaction between EB1
and p150Glued was identified. EB1-GFP deletion
mutants demonstrated a role for the N-terminus in mediating the
EB1-microtubule interaction, whereas C-terminal regions contributed to
both its microtubule tip localization and a centrosomal localization.
Cells expressing the last 84 aa of EB1 fused to GFP (EB1-C84-GFP)
displayed profound defects in microtubule organization and centrosomal
anchoring. EB1-C84-GFP expression severely inhibited microtubule
regrowth, focusing, and anchoring in transfected cells during recovery
from nocodazole treatment. The recruitment of
-tubulin and
p150Glued to centrosomes was also inhibited.
None of these effects were seen in cells expressing the last 50 aa of
EB1 fused to GFP. Furthermore, EB1-C84-GFP expression did not induce
Golgi apparatus fragmentation. We propose that a functional interaction
between EB1 and p150Glued is required for
microtubule minus end anchoring at centrosomes during the assembly and
maintenance of a radial microtubule array.
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INTRODUCTION |
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EB1 was originally identified as a protein
interacting with the C-terminus of the adenomatous polyposis coli (APC)
tumor suppressor protein (Su et al., 1995
). Truncating
mutations of the APC gene occur as an early event in
inherited and sporadic tumors of the colon (Polakis, 1997
). Truncated
APC proteins are defective in downregulating
-catenin in the WNT
signaling pathway (Munemitsu et al., 1995
), resulting in
increased cellular
-catenin and increased transcription of
proliferative genes (Korinek et al., 1997
). EB1 is the
prototypic member of a growing family of microtubule binding proteins
(MAPs; Tirnauer and Bierer, 2000
) including Bim1p in budding yeast and
Mal3 in fission yeast. Bim1p (Schwartz et al., 1997
)
localizes to the plus ends of extending microtubules and has been
suggested to play a role in regulating microtubule dynamics (Tirnauer
et al., 1999
). More recently Bim1p been shown to directly participate in the cortical capture of cytoplasmic microtubules during
spindle positioning through an interaction with Kar9p (Korinek et
al., 2000
; Lee et al., 2000
; Miller et al.,
2000
). It has also been shown to participate in a mitotic checkpoint,
which delays cytokinesis in the event of abnormal spindle positioning
(Muhua et al., 1998
; Adames and Cooper, 2000
). Mal3 was
originally isolated in a screen for yeast mutants defective in
chromosomal segregation (Beinhauer et al., 1997
), and its
loss was observed to affect microtubule length, nuclear positioning,
and cell shape. Taken together, these observations suggest a dual role
for EB1 proteins in yeast, the regulation of microtubule dynamics, and
participation in microtubule capture events at the cell cortex.
In mammalian cells, EB1 localizes to both the growing distal tip of
microtubules and the centrosome (Berrueta et al., 1998
; Morrison et al., 1998
; Mimori-Kiyosue et al.,
2000b
; Bu and Su, 2001
; Morrison et al., 2002
). EB1
interacts with the C-terminus of APC and may participate in either the
targeting of APC to microtubule tips or the APC-dependent capture of
microtubule tips at the cell cortex (Askham et al., 2000
;
Mimori-Kiyosue et al., 2000b
; Barth et al.,
2002
). APC itself can directly associate with microtubules in vitro and
in vivo (Munemitsu et al., 1994
; Smith et al.,
1994
; Näthke et al., 1996
; Deka et al.,
1998
; Askham et al., 2000
; Mimori-Kiyosue et al.,
2000a
), and it has been suggested that it may play a role in
controlling microtubule dynamics and stability during epithelial cell
migration (Näthke, 2000
; Zumbrunn et al., 2001
; Barth
et al., 2002
). Recently, the APC/EB1 complex has been demonstrated to positively regulate microtubule polymerization (Nakamura et al., 2001
) and has been suggested to
participate in kinetochore capture and the stabilization of
microtubule-kinetochore interactions (Fodde et
al., 2001
). Furthermore, APC mutations have been linked
to chromosomal instability, a common feature of many cancerous cells,
possibly as a consequence of the loss of the APC-EB1 interaction (Fodde
et al., 2001
; Kaplan et al., 2001
; see
Mimori-Kiyosue and Tsukita, 2001
for a recent review).
In addition to its interactions with microtubules and APC, EB1 has been
demonstrated to interact with components of the cytoplasmic dynein/dynactin microtubule motor complex (Berrueta et al.,
1999
). The functional significance of this interaction remains unknown, as does the identity of the specific binding partner for EB1 in this
large complex. Furthermore,
-catenin has recently been demonstrated to bind directly to dynein, suggesting a role for a
-catenin-dynein complex in microtubule attachment at adherens junctions (Ligon et
al., 2001
). There is therefore a multitude of potential complexes involving EB1, APC, microtubules, the dynein/dynactin complex, and
-catenin.
When this work began the microtubule interaction domain in EB1 was undetermined, the regions of EB1 involved in APC and dynein/dynactin binding were poorly defined, and no clear cellular function had been identified for EB1. The aim of this study was to further characterize human EB1, producing the information and reagents required for a rational examination of EB1 function in mammalian cells.
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MATERIALS AND METHODS |
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Cells
HCT116, SW480, and COS-7 cells were cultured as described
previously (Morrison et al., 1998
; Askham et al.,
2000
). Nocodazole treatment and washout experiments were performed as
described previously (Morrison et al., 1998
).
Antibodies
Monoclonal antibodies specific for EB1 and
p150Glued were obtained from Transduction
Laboratories (Lexington, KY). Monoclonal antibodies specific for
-catenin, acetylated tubulin, and the 58-kDa Golgi protein, along
with monoclonal and polyclonal antibodies specific for
-tubulin,
were obtained from Sigma (St. Louis, MO). A rat anti-
-tubulin
antibody was obtained from Serotec (Raleigh, NC). Rabbit polyclonal and
mouse monoclonal anti-GFP antibodies were obtained from Clontech (Palo
Alto, CA). All secondary antibodies were Alexa 488, 568, and 633 conjugates obtained from Molecular Probes (Eugene, OR).
Plasmid Construction
The plasmids mediating the expression of the fusion proteins
GST-APC-C1 and GST-EB1 have been previously described (Askham et
al., 2000
). The EB1-GFP expression plasmid has also been
previously described (Morrison et al., 2002
). A series of
GFP-tagged EB1 deletion mutants were generated by PCR amplification
with Pfu DNA polymerase (Stratagene, La Jolla, CA) of
sections of EB1 cDNA encoding EB1 amino acids 51-268
(EB1-
N1), 102-268 (EB1-
N2), 150-268 (EB1-
N3), 1-218
(EB1-
C1), 1-168 (EB1-
C2), and 1-113 (EB1-
C3). PCR primers
incorporated restriction enzyme sites for cloning into pJMA2eGFP
(Askham et al., 2000
). All plasmids were sequenced to check
for errors during PCR amplification. A series of GST-tagged EB1
deletion mutants were also generated by subcloning the sequenced
EB1 cDNA fragments from pJMA2eGFP into pGEX-4T-A10 (Askham
et al., 2000
). Three further GST-tagged and GFP-tagged EB1
deletion mutants were generated by PCR amplification of sections of
EB1 cDNA encoding EB1 amino acids 219-268 (EB1-C50),
185-268 (EB1-C84), and 185-241 (EB1-bZIP). PCR primers incorporated
restriction enzyme sites for cloning into pGEX-4T-A10 and pJMA2eGFP.
All plasmids were sequenced to check for errors during PCR
amplification. A plasmid mediating the expression of a 6His-EB1 fusion
protein was generated by PCR amplification with Pfu DNA
polymerase of EB1 cDNA with primers incorporating
BamHI and HindIII restriction sites and cloning
into the same sites in pRSETA (Invitrogen, Carlsbad, CA). The resulting
plasmid was sequenced to check for errors in the EB1 cDNA
and was termed p6His-EB1. Plasmids mediating the expression of
6His-tagged p150Glued deletion mutants were
generated by cloning rat p150Glued cDNA
fragments encoding amino acids 1-811, 1-330, and 600-811 into pET21a
(Novagen, Madison, WI) and fragments encoding amino acids 39-1276 and
149-811 into pET15b (Novagen) as described previously (Waterman-Storer
et al., 1995
).
Bacterial Protein Expression
Recombinant proteins were expressed in BL21(DE3) cells. GST
fusion proteins were purified from bacterial cell extracts, using glutathione-Sepharose beads as described previously (Askham et al., 2000
), and stored at
80°C until use. GST, GST-EB1, and
GST-APC-C1 were recovered from glutathione-Sepharose beads by
incubation in a buffer comprising 10 mM Tris-HCl, pH 8.0, 25 mM
glutathione, and a cocktail of protease inhibitors (1 mM AEBSF, 100 µM leupeptin, 1 µM pepstatin) for 18 h at 4°C and stored at
80°C until use. The recovery of GST-EB1-
N1 and GST-EB1-
C3
from bacterial lysates was significantly lower than that obtained for
the other fusion proteins. To avoid the introduction of
artifacts associated with this discrepancy, these fusion proteins were
not used in subsequent precipitation experiments. Bacteria expressing
6His-EB1 were lysed in a buffer comprising PBS, 1% Triton X-100, and
protease inhibitors (PBS/TX100), and the soluble fraction was purified
by nickel affinity chromatography using His-Bind cartridges (Novagen).
6His-EB1 was eluted from the cartridge in PBS/TX100, 500 mM imidazole.
Imidazole was removed by dialysis, and the protein was stored at
80°C until use. For precipitation experiments, 6His-EB1 was
complexed to Ni-2+Sepharose beads by incubation
in PBS/TX100 for 16 h at 4°C. Bacteria expressing
6His-p150(1-330) were lysed in modified RIPA buffer (RIPA-M)
comprising PBS, 1% Nonidet-P40, 1% sodium deoxycholate, 0.1% SDS,
and a cocktail of protease inhibitors (1 mM AEBSF, 100 µM leupeptin,
1 µM pepstatin), and the soluble fraction was purified by nickel
affinity chromatography using His-Bind cartridges (Novagen). 6His-p150(1-330) was eluted from the cartridge in RIPA-M, 500 mM imidazole.
Immunofluorescence and Confocal Microscopy
COS-7 cells were cultured on glass coverslips. Transfections
were performed as described previously (Askham et al.,
2000
). Cell treatments with nocodazole have been previously described (Morrison et al., 1998
). Eighteen hours after transfection,
cultures were fixed in methanol at
20°C, processed for
immunocytochemistry, and imaged using a Leica TCS-SP confocal
microscope (Deerfield, IL) as described previously (Morrison et
al., 1998
; Askham et al., 2000
). Care was taken to
image cells with a relatively normal, well-spread, interphase
morphology; cells exhibiting obvious signs of apoptosis or entry into
mitosis (as revealed by the routine staining of chromatin using DAPI)
were excluded for the purposes of this study. Comparisons of EB1-GFP
fusion protein expression levels in transfected cells were performed
using either the Quantitation software module of the Leica confocal
microscope operating system, by exporting images to NIH Image v1.62
(obtained free of charge from the National Institutes of Health,
Bethesda, MD) for further analysis or by examining confocal datasets in
the Imaris suite of image analysis software (Bitplane AG, Zurich,
Switzerland). The localizations identified for EB1-GFP and the
deletion mutants derived from it in transfected cells (Figure 3;
summarized in Table 1) are based on
observations of cells expressing the lowest levels of fusion protein
detectable by immunofluorescence unless otherwise stated.
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SDS-PAGE and Western Blotting
SDS-PAGE and Western blotting were performed as described
previously (Morrison et al., 1998
).
GST Fusion Protein Precipitations from Cell Extracts
Confluent cells in a 150-cm2 flask were scraped into PBS and pelleted by centrifugation, and the pellet was lysed in 3 ml of ice-cold PBS/TX100, 2 mM EDTA, 50 mM sodium fluoride, and 100 µM sodium orthovanadate (PBS/TX100-E). Insoluble material was pelleted by centrifugation at 12,000 ×g and discarded. Supernatants were precleared using glutathione-Sepharose beads before addition of GST fusion proteins bound to glutathione-Sepharose beads and incubation for 18 h at 4°C. Captured complexes were collected by centrifugation and washed five times for 15 min in 20 volumes of PBS/TX100-E. Finally, the complexes were resuspended in Laemmli SDS-PAGE loading buffer containing 10 mM DTT and boiled for 5 min before analysis by SDS-PAGE and Western blotting.
6His-EB1 Precipitations from Cell Extracts
Ni-2+Sepharose bound 6His-EB1 or Ni-2+Sepharose beads alone were preincubated in PBS/TX100 with GST, GST-APC-C1, or buffer alone for 1 h at 4°C with mixing. Cell extract, prepared as described above (but without EDTA), was then added, and incubation was continued for a additional 18 h. Captured complexes were processed and analyzed as described above.
In Vitro Binding Assays
One microgram each of plasmid DNA (encoding EB1-GFP and EB1-GFP deletion mutants or GFP-p150Glued, GFP alone, or 6His-p150Glued deletion mutants, as appropriate) were transcribed and translated in vitro in the presence of [35S]cysteine/methionine using the Promega TNT coupled transcription/translation system according to the manufacturers instructions (Madison, WI). The reaction mix was diluted in PBS/TX100, and a precipitation was performed using GST-APC-C1, GST-EB1, or GST alone as appropriate, essentially as described above. Precipitates were subjected to SDS-PAGE, and the gels were dried and exposed to photographic film to visualize captured fusion proteins.
Approximately 2 µg of purified 6His-p150(1-330) was incubated with ~2 µg of purified, glutathione-Sepharose-bound GST or GST-EB1 in 1 ml RIPA-M for 18 h at 18°C. Captured proteins were recovered by centrifugation and washed four times for 15 min in 1 ml RIPA-M. Finally, the complexes were resuspended in Laemmli SDS-PAGE loading buffer containing 10 mM DTT and boiled for 5 min before analysis by SDS-PAGE and Western blotting.
Approximately 2 µg of purified 6His-p150(1-330) was incubated with ~2 µg of purified GST or GST-EB1 in 1 ml RIPA-M (0.35% SDS) for 18 h at 18°C. Protein complexes were captured using His-bind magnetic beads (Novagen) and washed four times for 15 min in RIPA-M (0.35%) SDS. Finally, the complexes were resuspended in Laemmli SDS-PAGE loading buffer containing 10 mM DTT and boiled for 5 min before analysis by SDS-PAGE and Western blotting.
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RESULTS |
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Identification of Functional Domains in EB1
The EB1 interactions with APC, dynein/dynactin, and microtubules
have been described previously (Su et al., 1995
; Berrueta et al., 1998
; Morrison et al., 1998
; Berrueta
et al., 1999
; Askham et al., 2000
; Nakamura
et al., 2001
). To identify the functional domains in EB1
responsible for these interactions, a series of deletion mutants were
created by the sequential removal of 50 aa from the N- and C-termini of
the protein, creating six mutant proteins in total (see Figure
1). These deletions, along with full-length EB1, were cloned into a plasmid driving their expression as
C-terminal fusions with GFP. We have previously
described a GST fusion protein derived from the C-terminal 170 aa of
APC, which efficiently precipitates EB1 from cell extracts (GST-APC-C1; Askham et al., 2000
). We therefore used this tool to define
the APC-interacting region in EB1. The EB1-GFP fusion proteins were in
vitro transcribed/translated, and a precipitation reaction was
performed using GST-APC-C1. As shown in Figure
2A, EB1-GFP and the EB1-
N1, -
N2 and
-
N3-GFP fusion proteins were precipitated by GST-APC-C1,
demonstrating that the C-terminal addition of GFP to EB1 did not
inhibit the interaction with GST-APC-C1. None of the C-terminal
deletion mutants were precipitated, suggesting that the final 50 aa in
EB1 are essential for APC binding. To confirm this finding
N-terminal GST fusion proteins were produced using the same
deletion series used to make the GFP fusions (see Figure 1). All except
GST-EB1-
N1 and GST-EB1-
C3 were efficiently purified from
bacterial lysates. The remaining fusion proteins were used in
precipitation experiments from lysates of HCT116 and SW480 cells.
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We and others have previously shown that APC simultaneously binds EB1
and
-catenin (Morin et al., 1996
; Askham et
al., 2000
), allowing the detection of precipitated APC-EB1
complexes by immunoblotting for
-catenin.
-Catenin was detected in GST-EB1, GST-EB1-
N2, and GST-EB1-
N3
precipitates (Figure 2B) from HCT116 cells, which contain a full-length
APC capable of interacting with EB1 but not in precipitates from SW480
cells, which express a truncated APC protein that cannot bind to EB1
(Figure 2B). C-terminal GST-EB1 deletion mutants did not precipitate
-catenin. These results were entirely consistent with the in vitro
interaction studies. GST-EB1 and a fragment comprised of aa 136-268
have previously been shown to interact with components of the
cytoplasmic dynein/dynactin complex in cell extracts (Berrueta et
al., 1999
). GST-EB1 precipitates from SW480 cell extracts were
therefore probed using an antibody specific for the
p150Glued subunit of dynactin. The results
indicated that dynactin binding also required the final 50 aa of EB1.
Furthermore, the interaction was not dependent on APC (Figure 2B).
A recent study has shown that dynein can interact directly with
-catenin (Ligon et al., 2001
). Because EB1 can interact
with dynein/dynactin, it was possible that
-catenin present in
GST-EB1 precipitates from cell extracts could result from an
EB1/dynein/dynactin/
-catenin complex as well as from an
EB1/APC/
-catenin complex. The observation that no
-catenin was
specifically precipitated from cell extracts in the absence of an
EB1/APC interaction suggests that EB1 does not interact with
-catenin via dynein/dynactin (Figure 2B). To check whether there was
even a minor component of the EB1/
-catenin interaction was via
dynein/dynactin, the Western blot showing
-catenin precipitations
from SW480 cell extracts was overexposed (Figure 2B). A small amount of
background, nonspecific binding of
-catenin was observed in all
precipitations. Crucially, there was no detectable decrease in the
amount of background
-catenin in GST-EB1-
C1, -
C2
precipitations when compared with GST, full-length GST-EB1 and the
N-terminal deletion mutant precipitations. This result suggests that
EB1 is not a significant component of any
-catenin/dynein/dynactin complex.
To test which C-terminal EB1 residues were sufficient to bind APC and
dynactin, three further EB1 fusion proteins were created and used in
precipitation experiments. GST-EB1-C50, GST-EB1-C84, and GST-EB1-bZIP
all precipitated
-catenin from cell extracts, demonstrating an
association with APC, whereas only GST-EB1-C84 precipitated
p150Glued (Figure 2C). This refines the minimal
dynactin interaction region in EB1 to aa 185-268. In addition, the
overlapping region of these three fusion proteins suggests a minimal
APC binding region between aa 219 and 241.
The EB1 C-terminus contains a sequence with limited homology to leucine
zipper domains known to mediate protein-protein interactions in other
proteins, and it has been suggested that this region may facilitate
homodimerization of EB1 molecules (Juwana et al., 1999
). We
performed an in vitro transcription/translation of EB1-GFP followed by
precipitation using GST or GST-EB1 coupled to glutathione-Sepharose beads to test this hypothesis. No specific interaction between GST-EB1
and EB1-GFP was detected, suggesting that EB1 does not homodimerize in
this in vitro assay.
To define the region of EB1 involved in the association with
microtubules, EB1-GFP and the EB1 deletion mutants were transiently transfected into COS-7 cells and the distribution of the fusion proteins examined by fluorescence microscopy. At lower expression levels, EB1-GFP localized to a subset of microtubule tips in a manner
identical to endogenous EB1 as well as to the centrosome (Figure
3A, left-hand cell). At higher expression
levels, more extensive microtubule labeling was observed (Figure 3A,
right-hand cell). Removal of the N-terminal 50 aa of EB1
(EB1-
N1-GFP) abolished the microtubule association, but the
centrosomal association was still observed (Figure 3B). Removal of the
N-terminal 100 aa of EB1 (EB1-
N2-GFP) also abolished the microtubule
association, but at higher levels of expression the fusion protein was
seen to accumulate around the centrosome of the cell (Figure 3C). When the N-terminal 150 aa of EB1 were removed (EB1-
N3-GFP), weak microtubule labeling was seen in some cells, along with a centrosomal association (Figure 3D). The EB1-
C1-GFP fusion protein displayed a
robust microtubule association in transfected cells, which was less
polarized toward the microtubule plus-end than the distributions seen
for endogenous EB1 or EB1-GFP (Figure 3E). Removal of the C-terminal
100 aa of EB1 (EB1-
C2-GFP) gave a similar result (Figure 3F).
Removal of the C-terminal 150 aa of EB1 (EB1-
C3-GFP) completely abolished any microtubule association (Figure 3G). Thus it appears that
the first 50 aa of EB1 are essential for its microtubule association,
and aa 1-168 are sufficient for this association. Furthermore, none of
the C-terminal EB1 deletion mutants displayed a centrosomal
localization, in contrast to EB1-GFP and the N-terminal deletion
mutants.
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Direct Association of EB1 with p150Glued
Given that EB1 could associate with complexes containing
p150Glued in pull-down experiments from cell
extracts (Figure 2; Berrueta et al., 1999
) and that both EB1
and p150Glued localize to microtubule tips and
centrosomes (Vaughan et al., 1999
), we investigated whether
there was a direct interaction between EB1 and
p150Glued. In a simple in vitro binding assay,
in vitro-translated GFP-p150Glued was
precipitated by GST-EB1, but not GST alone, suggesting a direct
interaction between EB1 and p150Glued (Figure
4A). To define the region of
p150Glued responsible for the interaction, the
binding assay was repeated using in vitro-translated
p150Glued deletion mutants (Figure 4B).
Significantly greater amounts of 6His-p150(1-811) and
6His-p150(1-330) were precipitated by GST-EB1 than GST alone,
suggesting that the EB1 binding domain lies within the N-terminal 330 aa of p150Glued (Figure 4C). Furthermore,
6His-p150(39-1276) and 6His-p150(149-811) showed no specific binding
to GST-EB1 above background, demonstrating that the N-terminal 39 aa
are required for binding to EB1 (Figure 4C).
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To confirm a direct interaction between EB1 and p150Glued, further binding assays were performed using only purified recombinant proteins. Purified 6His-p150(1-330) was precipitated by purified GST-EB1 but not GST alone (Figure 4D). Similarly, purified GST-EB1 was precipitated with purified 6His-p150(1-330), whereas GST was not (Figure 4E). These experiments demonstrate a direct interaction between EB1 and p150Glued.
Mutually Exclusive Binding of EB1 to p150Glued and APC
Because the interaction sites for APC and
p150Glued in EB1 appeared to overlap, we next
investigated whether these proteins could bind to EB1 simultaneously.
We performed precipitation reactions from cell extracts using
Ni-2+Sepharose-conjugated 6His-EB1, preincubated
with either GST or GST-APC-C1. Preincubation with GST-APC-C1 abolished
precipitation of p150Glued, showing that binding
of APC to EB1 prevents the interaction with
p150Glued (Figure
5). Furthermore, although EB1 is
efficiently precipitated from cell extracts by GST-APC-C1 (Askham
et al., 2000
), no p150Glued was
detected in these precipitates, again demonstrating the absence of
dynactin in EB1-APC complexes.
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Full-length EB1 Is Required for Microtubule Stabilization and Bundling
It has previously been shown that EB1 overexpression in
transfected cells results in the formation of nocodazole-resistant bundles of acetylated microtubules (Bu and Su, 2001
). We investigated which domains of EB1 were required for this phenomenon. At levels of
expression ~5-10-fold higher than that observed to result in microtubule tip labeling, EB1-GFP extensively labeled microtubules and
induced nocodazole-resistant microtubule bundles, in agreement with the
findings of Bu and Su (2001)
. In all cells where EB1-GFP expression
induced microtubule bundling, these bundles immunostained intensely for
acetylated tubulin (Figure 6, A and B).
In contrast, no significant microtubule bundling was observed when any
of the EB1-GFP deletion mutants were expressed in transfected cells. Furthermore, no obvious increase in acetylated tubulin immunoreactivity was seen (Figure 6, C-F; only EB1-
C2-GFP and EB1-
N1-GFP are shown for brevity), although we note that that the immunostaining for
acetylated tubulin was very heterogeneous within a given population of
COS-7 cells. This shows that overexpression of the whole EB1 protein is
necessary to bundle and stabilize microtubules. Deletion of regions
known to be essential for binding microtubules or APC and dynactin
prevented this phenomenon. This finding is consistent with results from
previous studies investigating the functions of these EB1 binding
partners. A role for APC in stabilizing a subpopulation of cortically
anchored microtubules during cell migration has been suggested
(Näthke, 2000
; Zumbrunn et al., 2001
; Barth et
al., 2002
). Furthermore, a role for the APC/EB1 complex in
stabilizing kinetochore microtubules has been suggested (Fodde et al., 2001
), and the APC-EB1 interaction has been
shown to promote microtubule polymerization (Nakamura et
al., 2001
). It is also well established that
p150Glued overexpression induces microtubule
bundling (Waterman-Storer et al., 1995
; Quintyne et
al., 1999
).
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EB1 Deletion Mutants Interfere with the Microtubule Tip Localization of the Endogenous Protein
During our characterization of the EB1-GFP deletion series, we
noted that the epitope recognized by the monoclonal anti-EB1 antibody
from Transduction Laboratories was destroyed by removal of the final 50 aa in EB1 (Figure 7A). Exploiting this,
we investigated the effects of overexpressing the EB1-
C1-GFP fusion
protein on the distribution of endogenous EB1 in transfected cells,
because both of these proteins localized to microtubules. EB1-
C1-GFP displaced endogenous EB1 from microtubule tips in an expression level-dependent way (Figure 7, B-D). This suggested that this fusion
protein could compete with endogenous EB1 for binding to microtubule
tips. Similar results were obtained with EB1-
C2-GFP.
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However, the observed displacement of endogenous EB1 by EB1-
C1-GFP
could be due to either a direct competition effect or an indirect
effect resulting from changes in, for example, microtubule dynamics. To
resolve this question, we tested whether overexpression of these EB1
deletion mutants could displace CLIP-170, another protein that
specifically localizes to growing microtubule tips (Perez et
al., 1999
). When overexpressed, full-length EB1-GFP (Figure
8, A-C) but not EB1-
C1-GFP (Figure 8,
D-F) caused a loss of CLIP-170 from microtubule tips, suggesting that
EB1-
C1-GFP can indeed displace endogenous EB1 from microtubule tips
by direct competition. Similar results were obtained with
EB1-
C2-GFP.
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EB1 Is Required for Microtubule Focusing and Anchoring at Interphase Centrosomes
The results of our in vitro binding studies suggested that several EB1 deletion mutants had the potential to act as dominant-negative mutants if they were overexpressed in cells, giving us an opportunity to identify cellular functions for EB1, based on our knowledge of its interactions. In particular, the C84 fragment of EB1 would be predicted to competitively inhibit the interaction between endogenous EB1 and both APC and p150Glued, whereas the C50 fragment should only inhibit the EB1-APC interaction. These fragments were therefore overexpressed as GFP fusion proteins in COS-7 cells and the effects examined by immunofluorescence microscopy.
In common with the EB1 N-terminal deletions previously described in
this article, EB1-C84-GFP localized to the centrosome in transfected
cells (i.e., Figure 9, J-L, arrow). This
association appears weaker or absent in some cells, either because
background expression levels of the fusion protein are higher (Figure
9, A-C) or because centrosomal integrity appears to have been
compromised (Figure 9, D-I). In cells expressing even moderate levels
of EB1-C84-GFP, an inhibition of microtubule minus-end focusing at the
centrosome was seen (Figure 9, A-C and J-L). In many cells a profound
disruption of the normal radial microtubule array was apparent, and an
increased number of free cytoplasmic microtubules was seen (Figure 9,
D-L, arrowheads), implying that microtubule anchoring at the
centrosome was defective. These unanchored microtubules were often
short or looped. Occasionally, microtubules appeared to be loosely
focused around a variable number of amorphous structures in the
cytoplasm, which were also immunostained for
p150Glued (Figure 9, D-I, arrows). In general,
the perturbation of microtubule organization made it difficult to
examine whether the microtubule tip localization of
p150Glued was directly affected by EB1-C84-GFP
overexpression, although our results appear to suggest that it was
relatively unaffected (i.e., Figure 9, G-L). However, cells displaying
a clear centrosomal EB1-C84-GFP localization appeared to have less
p150Glued present at this organelle (i.e.,
Figure 9, J-L, arrow). Many cells expressing EB1-C84-GFP appeared to
have a lower microtubule density than adjacent untransfected cells
(i.e., Figure 9, A-C). This phenomenon was more marked in cells
transfected for longer times. Again, this observation is consistent
with a failure in microtubule anchoring at the centrosome because
microtubules with free minus ends are unstable in fibroblast cells
(Rodionov et al., 1999
). This would lead to a progressive
depletion of microtubules in cells expressing EB1-C84-GFP.
|
Because EB1-C84-GFP overexpression appeared to disrupt normal
microtubule anchoring and focusing at the centrosome, we costained EB1-C84-GFP-overexpressing cells for
-tubulin to reveal the
location of this organelle. Figure 10
shows cells in which EB1-C84-GFP overexpression again resulted in an
unfocused microtubule array and the appearance of detached
microtubules. In these cells, clear centrosomal
-tubulin staining
was still evident, although this staining was weaker in cells with a
highly disrupted microtubule cytoskeleton. No evidence of an increase
in noncentrosomal
-tubulin foci was seen. These observations
suggested that the increase in unanchored microtubules seen in cells
overexpressing EB1-C84-GFP was unlikely to arise from ectopic
nucleation of new microtubules at noncentrosomal sites, but instead
arose from defective microtubule anchoring at centrosomes.
|
EB1-C50-GFP inconsistently displayed a weaker centrosomal localization
in transfected cells (for example, this is seen in Figure
11D, arrow, but not in A). In cells
overexpressing EB1-C50-GFP a relatively normal radial microtubule array
was seen (Figure 11, B and F). In contrast to the effects of
EB1-C84-GFP overexpression, no evidence for an increase in the
proportion of free cytoplasmic microtubules was noted. Furthermore, the
centrosomal localization of p150Glued was
unaffected in transfected cells (Figure 11D, arrow). These findings
suggested that inhibition of the EB1-p150Glued
interaction and not the EB1-APC interaction underlie the defects in
microtubule anchoring at the centrosome observed in cells
overexpressing EB1-C84-GFP.
|
Because microtubule organization and centrosomal anchoring was inhibited in the presence of EB1-C84-GFP, we next investigated whether the expression of EB1 deletion mutants affected centrosomal assembly and function. Transfected cells were incubated with nocodazole to completely depolymerize the microtubule cytoskeleton then thoroughly washed to remove the drug. After increasing periods of time to allow microtubule regrowth, cells were fixed and immunostained.
At higher expression levels, EB1-C84-GFP completely inhibited
microtubule regrowth (Figure 12, A-C
and G-I, asterisks). This effect was often associated with a failure
to recruit p150Glued and
-tubulin to
centrosomes. Instead, both proteins were distributed in discrete foci
scattered throughout the cytoplasm (Figure 12, H and K, arrows). In
transfected cells where microtubule regrowth was evident (Figure 12,
D-F and J-L), it often centered on a subset of cytoplasmic foci
containing
-tubulin (Figure 12, K and L, arrowheads). However, the
resulting microtubule array was disorganized and unfocused (compare
transfected cell in Figure 12, D-F, with surrounding cells), and
evidence of defective microtubule anchoring at the centrosome was again
seen (Figure 12L, small arrows).
|
Microtubule regrowth and focusing in cells overexpressing EB1-C50-GFP
was essentially indistinguishable from that in adjacent, untransfected
cells (Figure 13, A-F). In addition,
recruitment of p150Glued and
-tubulin to
centrosomes appeared unaffected (Figure 13, A-F, arrows). Similar
results were obtained in cells overexpressing EB1-
C1-GFP (Figure 13,
G-I), suggesting that competitive inhibition of the localization of
endogenous EB1 to microtubule tips had little effect on microtubule
regrowth or focusing in this system.
|
Defects in microtubule focusing at the centrosome after inhibition of
dynactin function have been previously described by other workers
(Quintyne et al., 1999
). We therefore wanted to assess
whether the effects induced by EB1-C84-GFP overexpression were due to a
similar inhibition of dynactin function. A classic hallmark of
dynein/dynactin functional inhibition in interphase cells is the
fragmentation and dispersal of the Golgi apparatus (Burkhardt et
al., 1997
). We therefore immunostained transfected cells with
antibodies to a Golgi marker protein. Because Golgi dispersal can also
be produced by disruption of the microtubule cytoskeleton, we
coimmunostained the cells with tubulin-specific antibodies. EB1-C84-GFP
expression did not induce Golgi fragmentation (Figure
14, A-F), and any observable effects
on Golgi morphology and localization were entirely consistent with the
severity of the defects in microtubule organization in that cell.
Similar results were obtained in cells overexpressing EB1-C50-GFP
(Figure 14, G-I) and EB1-
C1-GFP and when the Golgi apparatus in
transfected cells was detected using fluorescently tagged wheat germ
agglutinin.
|
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DISCUSSION |
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Protein-Protein Interaction Domains in EB1
We initially set out to define domains in EB1 responsible for mediating the interactions with APC, the dynein/dynactin complex, and microtubules. Table 1 represents a summary of the data presented in this study.
In vitro protein-protein interaction studies localized the
dynein/dynactin association region in EB1 to the C-terminal 84 aa.
These data significantly refine the binding region identified in a
previous study (Berrueta et al., 1999
). Previously it was known that the C-terminal two thirds of EB1 was sufficient to bind APC
(Su et al., 1995
), and a more recent study confirmed that
the binding region lay within the C-terminal half of the protein (Barth
et al., 2002
). Because GST-EB1-C50, -C84, and -bZIP were
all able to associate with APC, our data show that the APC binding
region is fully encompassed by the final 84 aa of EB1 and is likely to
lie between EB1 amino acids 219 and 241. Interestingly, this is a
region of EB1 highly conserved between different species and which in
Bim1p overlaps with the binding region identified for Kar9p (Miller
et al., 2000
). However, it remains possible that EB1 has
multiple APC binding regions within the last 84 amino acids.
In transfected cells the association of EB1 with microtubules required
the N-terminus of the protein. At 30-kDa EB1 is much smaller than many
other proteins that localize to growing microtubule tips, such as
CLIP-170, CLIP-115, and p150Glued (Perez
et al., 1999
; Vaughan et al., 1999
; Hoogenraad
et al., 2000
). These proteins possess a structurally related
microtubule-binding region, which in the case of CLIP-170 exceeds the
size of full-length EB1 (Diamantopolous et al., 1999
). A
requirement for the entire N-terminal half of EB1 in microtubule
binding therefore appears reasonable. The weak localization of
EB1-
N3-GFP to microtubules in transfected cells (Figure 3D) can be
explained by an interaction with APC or
p150Glued, because this deletion mutant can
still associate with both of these proteins (Figure 2B). This raises
the possibility that the EB1 microtubule association is at least partly
dependent on interactions with other microtubule-binding proteins.
However, given the weak nature of the EB1-
N3-GFP microtubule
localization, we would suggest that any such contribution was minor,
especially because both EB1-
C1-GFP and EB1-
C2-GFP were able to
compete endogenous EB1 away from microtubule tips even though neither
can interact with APC or dynein/dynactin. However, a model in which EB1
binds to microtubules directly but interactions with other MAPs
contribute to a polarized localization at microtubule tips is
consistent with our data.
Dissecting the Interactions between EB1, p150Glued, and APC
In vitro binding assays demonstrated a direct interaction between
EB1 and p150Glued (Figure 4). The EB1 binding
region in p150Glued localized within the first
330 aa of the protein. The N-terminus of
p150Glued has been shown to harbor the
microtubule-binding region (Waterman-Storer et al., 1995
;
Vaughan and Vallee, 1999
), and the CDIC binding region lies
between aa 150-811 (Vaughan and Vallee, 1999
). Because aa 1-39
were essential for EB1 binding (Figure 4), it seems unlikely that there
is much overlap between the EB1 and CDIC binding regions. This is
consistent with the previously observed coimmunoprecipitation of both
p150Glued and CDIC with EB1 from cell extracts
(Berrueta et al., 1999
).
It has recently been suggested that a dynein-
-catenin interaction
plays a role in capturing and tethering microtubules at the adherens
junction (Ligon et al., 2001
). In this study we found no
evidence for a stable EB1-
-catenin interaction mediated via dynein/dynactin (Figure 2B), although a transient interaction during
microtubule capture cannot be ruled out. With this in mind we note that
an EB1-p150Glued complex at the microtubule tip
could contact cortically anchored,
-catenin-associated dynein,
enabling the cortical capture of the microtubule via a
p150Glued-dynein interaction.
In yeast a cortical microtubule capture mechanism that participates in
mitotic spindle positioning has been shown to involve an interaction
between microtubule-associated Bim1p and Kar9p, a protein whose
cortical localization is actin dependent (see Schuyler and Pellman,
2001
for a review). Because there is some homology between the Kar9p
and APC sequences in the EB1-binding region of APC, it has been
suggested that Kar9p function might be provided by APC in higher
eukaryotes (Bienz, 2001
). This idea is supported by the observation
that APC localizes to the lateral plasma membrane of epithelial cells
in an actin-dependent manner (Rosin-Arbesfeld et al., 2001
).
A model in which EB1 at astral microtubule tips (Morrison and Askham,
2001
) is involved in the capture of these microtubules at the cortex
via an interaction with APC during mitosis can therefore be
constructed. This model is supported by observations that implicate
Drosophila APC and EB1 homologues in the orientation of cell
divisions in neuroepithelial tissue (McCartney et al., 1999
;
Lu et al., 2001
).
To complicate matters, however, the dynein/dynactin complex is already
known to be required for the spindle movements arising from the
cortical capture of astral microtubules in mammalian cells (Busson
et al., 1998
; O'Connell and Wang, 2000
). A case can
therefore be made for a simple model in which EB1 interacts directly
with cortically anchored dynein/dynactin without any APC involvement. A
direct EB1-dynein/dynactin interaction has the potential to both tether
microtubules and exert force on them, an essential feature for
subsequent spindle movement. Interestingly, APC is now known to
interact with kinesin motor proteins (Jimbo et al., 2002
).
It may be possible that EB1 participates in two separate mechanisms
linking cortical microtubule capture to spindle movement in animal
cells, one involving an APC interaction with force generation provided
by kinesins and the other an interaction with dynactin with force
generation provided by dynein. This would reflect the situation in
budding yeast, where dynein and the kinesin protein Kip3p define
redundant mechanisms for orienting the mitotic spindle. The Bim1p-Kar9p
interaction is known to act in the Kip3p-dependent pathway (Schuyler
and Pellman, 2001
). The potential existence and significance of these
currently hypothetical interactions for EB1 at the cell cortex in
mammalian cells requires careful examination.
EB1: A Microtubule Plus-end-associated Protein Required for Microtubule Anchoring at Centrosomes
Initially, the lack of microtubule focusing and retention at the
centrosome in cells overexpressing EB1-C84-GFP seemed consistent with a
profound inhibition of dynein/dynactin function. Previous investigators
have carefully examined the function of dynactin at centrosomes using
the same cell system and similar methods to those used here (Quintyne
et al., 1999
). Of particular interest were the effects of
inhibiting p150Glued function by overexpression
of the CDIC and Arp1 binding regions of the protein and the effects of
a general blockade of dynein/dynactin function by
p50Dynamitin overexpression. In all three cases
both microtubule focusing and the p150Glued
localization to centrosomes was inhibited.
However, the effects of EB1-C84-GFP expression are significantly more
severe than those reported in this earlier study. For example,
inhibition of dynactin function had no effect on microtubule regrowth
and organization during recovery from nocodazole treatment until
several hours after nocodazole washout, when a progressive defect in
microtubule focusing at the centrosome became apparent. It is possible
that the effects of EB1-C84-GFP overexpression arise from the combined
inhibition of the EB1 interactions with APC and
p150Glued. However, as any consequences of
EB1-C50-GFP expression on microtubule organization were not obvious in
this study, a powerful synergistic effect would be needed to produce
the severe defects induced by EB1-C84-GFP. We also note that
EB1-
C1-GFP overexpression might be expected to inhibit any EB1
interactions at microtubule plus-ends by displacing endogenous EB1 from
microtubule tips, but this had no effect on microtubule regrowth and
centrosomal focusing after nocodazole treatment. Taking this into
account, and given the previously identified role for centrosomal
p150Glued in microtubule focusing, we propose
that the effects of EB1-C84-GFP overexpression arise primarily from the
competitive inhibition of an EB1-p150Glued
interaction at the centrosome. However, we would not rule out the
possibility that the inhibition of EB1 interactions at microtubule plus-ends could also contribute to these effects.
The specific role that an EB1-p150Glued
interaction might play in promoting microtubule anchoring at
centrosomes remains unclear. The severity of the effects induced by
EB1-C84-GFP overexpression when compared with those seen by previous
workers suggests that a simple inhibition of dynein/dynactin function
cannot fully account for them. Indeed, the observation that EB1-C84-GFP
overexpression did not induce Golgi fragmentation demonstrates that
inhibition of the EB1-p150Glued interaction does
not affect all cytosolic dynein/dynactin functions (Figure 14). In the
study by Quintyne et al. (1999)
, defects in microtubule
organization were tightly correlated with the loss of
p150Glued from centrosomes. The authors proposed
that p150Glued was directly involved in the
anchoring of microtubules at the centrosome, a function distinct from
its established role as a dynein-associated dynactin subunit involved
in intracellular membrane transport. We might therefore speculate that
the EB1 interaction plays a fundamental role in the centrosomal
recruitment and retention of p150Glued, a
hypothesis consistent with our observations in this article (Figures 9
and 12). Another possibility is that EB1-C84-GFP overexpression inhibits the interaction between EB1 and an, as-yet unidentified binding partner. Although it cannot be excluded, we have tried to
reduce the likelihood of this by the use of fusion proteins representing defined minimal protein-protein interaction regions within EB1 in our experiments.
Regulated microtubule release from centrosomes is a normal
physiological event during the differentiation of a number of cell types, although the mechanisms underlying this phenomenon remain poorly
defined (Keating and Borisy, 1999
). It is tempting to speculate that
modulation of the interaction between EB1 and
p150Glued might play a role in this process. The
interaction between EB1 and APC is known to be regulated by APC
phosphorylation (Askham et al., 2000
; Nakamura et
al., 2001
). Future studies should reveal whether the
EB1-p150Glued interaction is regulated in a
similar way.
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ACKNOWLEDGMENTS |
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This work was supported by Yorkshire Cancer Research, the Medical Research Council (UK), and Cancer Research UK. E.E.M. was an MRC Fellow during the majority of this work.
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FOOTNOTES |
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Corresponding author. E-mail address:
rmrjma{at}leeds.ac.uk.
¶ Present address: CRUK Clinical Center at Leeds, Division of Cancer Medicine Research, St. James's University Hospital, Leeds LS9 7TF, United Kingdom.
Article published online ahead of print. Mol. Biol. Cell 10.1091/mbc.E02-01-0061. Article and publication date are at www.molbiolcell.org/cgi/doi/10.1091/mbc.E02-01-0061.
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REFERENCES |
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