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Vol. 13, Issue 5, 1566-1581, May 2002
Department of Biology, The Johns Hopkins University, Baltimore, Maryland 21218
Submitted June 28, 2001; Revised January 23, 2002; Accepted February 1, 2002| |
ABSTRACT |
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Quality control of protein biosynthesis requires ER-retention and
ER-associated degradation (ERAD) of unassembled/misfolded molecules.
Although some evidence exists for the organization of the ER into
functionally distinct membrane domains, it is unknown if such domains
are involved in the retention and ERAD of unassembled proteins. Here,
it is shown that unassembled MHC class I molecules are retained in the
ER without accumulating at ER-exit sites or in the ERGIC of
2m
/
cells. Furthermore, these
molecules did not cluster in the ER membrane and appeared to be highly
mobile even when ERAD or their association with calnexin were
inhibited. However, upon ATP depletion, they were reversibly segregated
into an ER membrane domain, distinct from ER exit sites, which included
calnexin and COPII, but not the ERGIC marker protein p58. This quality
control domain was also observed upon prolonged inhibition of
proteasomes. Microtubules were required for its appearance. Segregation
of unfolded proteins, ER-resident chaperones, and COPII may be a
temporal adaptation to cell stress.
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INTRODUCTION |
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Major histocompatibility complex (MHC) class I
molecules consist of a transmembrane heavy chain, a soluble
2-microglobulin (
2m) light chain, and an 8-10 residue
peptide. Assembly of MHC class I heterotrimers occurs in the
endoplasmic reticulum (ER) and involves binding to the ER-resident
chaperones calnexin, calreticulin and ERp57, and a peptide-loading
complex comprising the transporter associated with antigen processing
and tapasin (Cresswell et al., 1999
). Assembly begins with
noncovalent association of MHC class I heavy chains with
2m; this is
facilitated by their interaction with calnexin and calreticulin. In the
absence of
2m, unassembled/misfolded MHC class I molecules are
retained in the ER, and they are extruded into the cytosol where they
are deglycosylated and degraded by the proteasome (Sege et
al., 1981
; Hughes et al., 1997
).
ER retention of misfolded proteins occurs either by their retrieval
from post-ER compartments (ERGIC and/or cis-Golgi) or by
their exclusion from sites of vesicle formation for ER exit (Ellgaard
et al., 1999
). The intramembrane mechanism of ER retention can be either dynamic or static. Misfolded vesicular stomatitis virus G
(VSVG) proteins have been observed to diffuse freely in the ER
membrane, and this may reflect their dynamic association with and
dissociation from calnexin and BiP (Cannon and Helenius, 1999
; Nehls
et al., 2000
). In contrast, other unassembled proteins may
interact with ER resident chaperones that are part of a relatively immobile ER matrix (Tatu and Helenius, 1997
; Lee et al.,
1999
; Marguet et al., 1999
). A static mechanism can also
involve the aggregation of misfolded proteins into complexes that are
too large to be packaged into ER-budding vesicles (Rivera et
al., 2000
).
Prolonged retention of unassembled or misfolded proteins in the ER is
followed by their degradation. ER-associated degradation (ERAD) entails
recognition of terminally misfolded proteins by ER-resident chaperones,
retrotranslocation into the cytosol, and degradation by the proteasome
after deglycosylation and ubiquitination (Ellgaard et al.,
1999
). Differential mannose trimming by ER mannosidases I and II has
been proposed to signal the degradation of terminally misfolded
glyproteins (Liu et al., 1999
; Cabral et al.,
2000
). Recent studies have shown that ERAD is suppressed upon
inhibiting the activity of ER mannosidases (Liu et al.,
1999
; Tokunaga et al., 2000
; Wang and White, 2000
).
Retrotranslocation of misfolded proteins into the cytosol appears to
occur concurrently with their degradation by the proteasome. Several
studies have shown that upon inhibition of proteasomal activity,
misfolded proteins do not translocate into the cytosol, and they remain
intact in the secretory pathway (Hirsch and Ploegh, 2000
).
Although ER retention and ERAD of misfolded proteins are processes that
occur in tandem, they are mostly studied as separate phenomena, and it
is unknown how ERAD may sustain or contribute to mechanisms of ER
retention. Furthermore, it is unknown how the ER membrane is organized
to facilitate ER retention and ERAD of misfolded proteins. Some
biochemical and ultrastructural evidence exists for the organization of
the ER into restricted and perhaps functionally distinct membrane
domains (Pryme, 1986
; Vertel et al., 1992
; Baumann and Walz,
2001
), but no studies have probed for the accumulation of misfolded
proteins at such membrane domains.
Here, we investigate the intramembrane mechanism by which unassembled
mouse MHC class I, H2Kb molecules are retained in
the ER of fibroblast cells from
2m knock-out mice (Koller et
al. 1990
; Zijlstra et al., 1990
). To probe for membrane
domains, unassembled H2Kb molecules were imaged
at a resolution of <100 Å by fluorescence resonance energy transfer
(FRET), and their diffusion was measured by fluorescence recovery after
photobleaching (FRAP). Unassembled MHC class I molecules diffused
freely and were randomly distributed in the ER membrane of
2m
/
cells even when
calnexin-association and ERAD were inhibited. However, when cells were
depleted of ATP, MHC class I molecules accumulated at an ER subdomain
that included calnexin and COPII.
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MATERIALS AND METHODS |
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Cells and DNA Constructs
Primary fibroblast cells from
2m
/
mice were passaged twice, and
they were transfected with a plasmid (pRSV-TAg) encoding for the SV40 (SV40) T-Ag, a kind gift of Dr. Stephen Gould (Johns Hopkins
School of Medicine). Cells were passaged once, and they were fed every
2-4 d with DMEM supplemented with glucose and 20% fetal bovine serum
(FBS). After the formation of foci, cells were trypsinized. The mixture
was placed in a conical tube, and it was left undisturbed until the
foci had settled to the bottom of the tube. The top 80% of the
supernatant was discarded. The foci along with the remaining 20% of
the supernatant were plated and fed for another 2 weeks to select for
transformed cells. At the end of this period, cells from the newly
harvested foci were expanded in a continuous culture. Frozen stocks
were made, and the new cell line was designated as
2m
/
cells. Stable cell lines
(
2m
/
KbGFP)
were produced by transfecting
2m
/
cells with pH2KbGFP (Spiliotis
et al., 2000
). Cells were transfected using LipofectAMINE reagent (Life Technologies, Rockville, MD), then selected for G418 resistance, and cloned. These cells lines were maintained by 1:10
passage three to four times weekly in DMEM supplemented with glucose,
15% FBS.
Transient transfections of
2m
/
cells were established using 2 µg of
pH2Lduntag (Marguet et
al., 1999
) per 6 µl of the FuGENE reagent (Roche Molecular
Biochemicals, Indianapolis, IN). L-cells were maintained as previously
described (Marguet et al., 1999
), and they were transiently
transfected using 2 µg of
pH2KbGFP per 6 µl of the
FuGENE reagent. For FRET experiments,
2m
/
cells were plated onto
coverslips for 24 h, and subsequently they were transfected with
pH2KbYFP and
pH2KbCFP at ratios of 1:1 (1 µg:1 µg), 2:1 (1 µg:0.5 µg), and 1:2 (1 µg:0.5 µg) per each
6 µl of the FuGENE reagent.
The pH2KbYFP and
pH2KbCFP constructs were made
by excising the EGFP from
pH2KbGFP using the restriction
enzymes BamHI and BsrGI (New England Biolabs).
The remaining linear DNA of
pH2KbGFP was ligated to the
BamHI/BsrGI fragments of pYFP-N3 and
pCFP-N3 (Pentcheva and Edidin, 2001
).
Where indicated, cells were incubated in medium supplemented with 1 mM castanospermine (Sigma Chemical, St. Louis, MO), 1 mM swainsonine (Calbiochem, La Jolla, CA), 1 mM kifunensine (Calbiochem), 20 µM lactacystin (Kamiya Biomedical, Thousand Oaks, CA). In ATP-depletion experiments, cells were incubated in glucose- and sodium pyruvate-free DMEM (Life Technologies) supplemented with 50 mM 2-deoxy-D-glucose (Sigma) and 0.02% sodium azide (Sigma). Where indicated, cell media were supplemented with 33 µM nocodazole (Sigma).
Confocal Microscopy
Cells were fixed for 30 min at room temperature with 4%
paraformaldehyde in PBS. After washing with 0.25%
NH4Cl in PBS, cells were permeabilized in PBS
containing 0.2% saponin and 1% BSA. This solution was also used for
all antibody dilutions and washes. Rabbit anti-p137 (Shugrue et
al., 1999
) was the gift of Dr. Ann Hubbard (Johns Hopkins School
of Medicine); it was diluted at 1:1000. Rabbit anti-p58 (Saraste and
Svensson, 1991
) was donated by Dr. Jaakko Saraste (University of
Bergen, Norway); it was used at 1:50. Rabbit anti-
-mannosidase II
(Velasco et al., 1993
) was the gift of Dr. Marilyn Farquhar
(University of California, San Diego); it was diluted at 1:800. A
rabbit anticalnexin carboxy terminus polyclonal antibody (StressGen,
Victoria, British Columbia, Canada) was diluted at 1:200. mAb 64-3-7 (Shiroishi et al., 1985
) was the kind gift of Dr. Ted Hansen
(Washington University School of Medicine), and it was used at 20 µg/ml. Rabbit anti-UDPGlc:glycoprotein glucosyltransferase (Zuber
et al., 2001
) was kindly donated by Dr. Armando Parodi
(University of San Martin, Buenos Aires, Argentina); it was diluted at
1:200. The Cy5-conjugated F(ab')2 donkey
anti-rabbit and anti-mouse IgG (H+L), and the Alexa 488
conjugated
F(ab')2 goat anti-rabbit (H+L) reagents (Jackson
ImmunoResearch Laboratories, West Grove, PA) were used at 10 µg/ml.
An ethanol stock (1 mg/ml) of DiOC6 (Molecular Probes, Eugene, OR) was
diluted at 200 ng/ml, and it was immediately added to permeabilized
cells for no longer than 30 s. Before staining, antibodies were
airfuged at 80,000 rpm. Coverslips were mounted onto glass slides in
antifade solution containing 0.1% DABCO (Sigma) and 90% glycerol.
Samples were imaged on a confocal laser scanning microscope (Leica TCS
SP, Deerfield, IL) from ~1-µm optical sections.
Measurements of Lateral Diffusion by FRAP
Before each experiment,
2m
/
KbGFP
cells were grown on coverslips for 2 days. `Untreated and drug-treated
cells (see Table 1) were washed twice in
Hanks balanced salt solution (Life Technologies), supplemented with 1%
FBS and 10 mM HEPES (pH 7.3). Cells were mounted on slides in the same
solution containing castanospermine, swainsonine, kifunensine, or
lactacystin, and they were sealed with nail polish. Measurements of
lateral diffusion were performed at 37°C for no longer than 45 min
per each newly mounted coverslip. After incubation of cells in
ATP-depletion medium for 30 min, measurements of lateral diffusion were
performed in glucose-free medium containing 50 mM
2-deoxy-D-glucose and 0.02% sodium azide for no
longer than 30 min.
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Measurements of lateral diffusion, data collection, and analysis were
all as previously described (Marguet et al., 1999
). D and R
were derived from more than 25 measurements per each condition.
FRET Microscopy
Cells were fixed with 4% paraformaldehyde in PBS for 30 min at room temperature. After washing with PBS, cells were incubated for 10 min in equilibration buffer from the SlowFade Light antifade kit (Molecular Probes). Coverslips were mounted on slides in antifade from the same kit and sealed with nail polish.
Cells were imaged on a Zeiss Axiovert 135 TV microscope (Carl Zeiss, Inc., Thornwood, NY) using a 1.4 NA ×100 Zeiss Plan-apochromat objective. Fluorescence was exited with a 75-W arc lamp. CFP and YFP were detected with XF114 and XF30 filter sets, respectively (Omega Optical, Brattleboro, VT). Digital images were collected with a 12-bit Series 300 cooled CCD (Roper Scientific, Tucson, AZ), operated by the IC300 digital imaging system (Inovision, Raleigh, NC). During the course of a FRET experiment, four images were acquired in the following sequence: 1) an image of the CFP fluorescence; 2) an image of the YFP fluorescence; 3) another image of the YFP fluorescence after 30 s of continuous excitation (photobleaching); and 4) an image of the CFP fluorescence after the photobleaching of YFP. Data were collected from more than 10 fields per coverslip.
Image registration and data analysis were all exactly as previously
described (Pentcheva and Edidin, 2001
).
Immunoprecipitations, Western Blots, and Pulse-chase
Cells were lysed in buffer containing 1% CHAPS (Sigma), 0.15 M NaCl, 0.05 M Tris-HCl (pH 7.5), 1 mM PMSF, and protease inhibitors. Postnuclear supernatants were precleared with protein A-Sepharose beads (Sigma) and incubated with rabbit anticalnexin (StressGen), and then protein complexes were recovered by incubating with protein A-Sepharose beads. Beads were washed five times in buffer containing 0.1% CHAPS and eluted in 0.2% SDS and 0.125 M Tris-HCl (pH 6.8).
Immunoprecipitates and whole lysates were run on SDS-PAGE and transferred to OPTITRAN membranes (Schleicher & Schuell, Keene, NH). Membranes were incubated with anticalnexin (StressGen), anti-GFP (Molecular Probes), anti-Grp78 (BiP; StressGen) or antiactin (Research Diagnostics, Flanders, NJ) in PBS containing 0.05% Tween-20 and 5% nonfat dry milk. Subsequently, they were washed in PBS/0.05% Tween-20 and incubated with horseradish peroxidase-conjugated anti-rabbit or anti-mouse Ig (Amersham Corp., Arlington Heights, IL). After washing in PBS/0.3% Tween-20, membranes were incubated with ECL detection reagents (Amersham Corp.) and applied to BioMax MR films (Eastman-Kodak, Rochester, NY).
For pulse-chase experiments, 3 million cells were starved for 45 min in
methionine- and cysteine-free DMEM (Life Technologies) containing 5%
dialyzed FBS, pulsed with ~500 µCi/ml
Tran35S-label for 20 min, and chased for 4 h
in medium containing 3 mM L-methionine and 3 mM cysteine.
Where indicated, all cell media were supplemented with 25 µM
lactacystin. Cells were lysed in buffer containing 0.5% Triton X-100
(Sigma), and postnuclear supernatants were precleared with protein
G-agarose beads (Sigma). To recover unassembled
H2Kb molecules, excess of
2m and 10 µg/ml
high-affinity affinity peptide SIY were added to each lysate.
Lysates were incubated with mAb 20-8-4 (binds to the
1 domain of
2m-associated H2Kb heavy chains; Williams
et al., 1989
) and the immune complexes were recovered with
protein G-agarose, washed in buffer containing 0.1% Triton X-100, and
eluted at 95°C. After residual mAb 20-8-4 was removed by incubating
twice with protein G-agarose, lysates were treated with anticalnexin
antiserum (StressGen). Eluates were analyzed by 10% SDS-PAGE and
autoradiography. The autoradiographs were scanned using Adobe Photoshop
(Adobe Systems, San Jose, CA), and densitometric analysis was performed
using NIH Image software.
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RESULTS |
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ER-retention of Unassembled MHC Class I Molecules by Exclusion from ER-exit Sites and the ERGIC
The mechanism by which unassembled MHC class I heavy chains are
retained in the ER because of lack of association with
2m has been
studied only in interferon-
-inducible carcinoma cell lines (Hsu
et al., 1991
). These cell lines have been useful in identifying aspects of MHC class I assembly and retention in the ER;
however, they are characterized by defective expression of intracellular factors, whose function maybe essential in protein synthesis and export from the ER (Klar and Hammerling, 1989
). To study
ER retention of MHC class I heavy chains in the specific absence of
2m, primary fibroblast cells from
2m knock-out mice (Koller
et al., 1990
; Zijlstra et al., 1990
) were
transformed with the SV40 T-antigen. The new cell line was stably
transfected with H2KbGFP, a functional
H2Kb chimera with the GFP attached to the
C'-terminal end of its cytoplasmic tail (Spiliotis et al.,
2000
).
To see if unassembled MHC class I proteins are retained in the ER by
recycling from the ERGIC or by exclusion from ER-exit sites, the
intracellular distribution of H2KbGFP molecules
was imaged by confocal microscopy. Green fluorescent H2Kb molecules were uniformly distributed
throughout the cytosol in a reticular pattern including a brightly
stained nuclear envelope (Figure 1, A and
G). H2KbGFP molecules were not localized to
post-ER compartments, as shown by staining for p137, a component of the
COPII coat that localizes to ER exit sites (Shugrue et al.,
1999
), and for p58, the rodent homologue of ERGIC53 (Saraste and
Svensson, 1991
; Figure 1, C and I). To see if this was due to rapid
recycling of MHC class I molecules between the ERGIC and the ER, cells
were incubated at 15°C to block ER-to-Golgi transport at the level of
ERGIC (Saraste and Svensson, 1991
; Plutner et al., 1992
). In
addition, protein synthesis was inhibited to chase
H2KbGFP molecules out of the ER and into the
ER-exit sites or the ERGIC. Consistent with previous observations
(Hammond and Glick, 2000
), this treatment resulted in the proliferation
of p137-containing elements, which appeared in juxtanuclear structures
that resemble the ERGIC (Figure 1E). Although
H2KbGFP fluorescence was somewhat more
concentrated in the area of the ERGIC than in the rest of the cell
(Figure 1F; bold arrowhead), MHC class I molecules maintained a
reticular distribution and were excluded from many p137-containing
puncta (Figure 1F, thin arrow). On prolonged incubation of cells at
15°C without inhibiting protein synthesis,
H2KbGFP molecules remained mainly in the ER, and
several p58-containing elements of the ERGIC were free of any
H2KbGFP fluorescence (Figure 1L).
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To control for artifacts from the use of GFP-tagged probes and to rule
out the possibility that these findings were specific to MHC molecules
of the H2Kb allele, a similar set of experiments
was performed on cells that transiently expressed unmodified
H2Ld heavy chains. Intracellular distribution of
H2Ld molecules (Figure
2, B and H) was revealed by staining of
cells with the conformation-specific mAb 64-3-7 (Lie et al.,
1991
); it was identical to the reticular pattern of
H2KbGFP. Although some H2Ld
molecules were localized to ER-exit sites (Figure 2C; yellow puncta)
and to the ERGIC (Figure 18I; yellow puncta), most of these elements
were free of H2Ld (see separate green and red
elements in the insets of Figure 2, C and I). The 15°C temperature
block of ER-to-Golgi traffic had an effect similar to that observed for
H2KbGFP. There was some concentration of
H2Ld molecules at p137- (Figure 2E) and
p58-containing structures (Figure 2K), but most remained distributed in
the reticular pattern characteristic of ER localization. In addition,
many sites of the transitional ER and the ERGIC appeared to be free of
H2Ld molecules (see green elements in the insets
of Figure 2, F and L). These data suggest that the dominant mechanism
by which unassembled MHC class I molecules are retained in the ER does
not involve rapid recycling between the ERGIC and the ER or significant
accumulation at a specialized subcompartment of the ER.
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Free Diffusion and Random Distribution of Unassembled MHC Class I
Molecules in the ER Membrane of
2m
/
Cells
To see if exclusion from ER-exit sites was due to immobilization, aggregation, or clustering at distinct membrane domains, the intramembrane mobility and distribution of unassembled/misfolded molecules were quantitatively imaged by FRAP and FRET, respectively.
In measurements of lateral mobility by FRAP, a diffusion coefficient,
D, is derived from the half-time of fluorescence recovery, and it shows how fast molecules diffuse within the membrane bilayer. The extent of fluorescence recovery (mobile fraction, R)
indicates the percentage of molecules that are free to diffuse and/or
the existence of disconnected membrane domains. If
unassembled/misfolded MHC class I molecules associate with immobile or
slowly diffusing proteins, their apparent D should be lower
than the one reported for their fully assembled counterparts (Marguet
et al., 1999
). If they aggregate or associate with immobile
proteins irreversibly, their mobile fraction, R, should be
low (Nehls et al., 2000
). Alternatively, segregation of
molecules into membrane subregions should also result in low mobile
fractions (Yechiel and Edidin, 1987
).
The diffusion of H2KbGFP in the ER of
2m
/
cells, D = 40 ± 3 × 10
10
cm2 s
1 and
R = 83 ± 5% (see Table 1 for a summary of all
D and R), was similar to the diffusion of
H2KbGFP and H2LdGFP
molecules, after assembly and dissociation from TAP in wild-type L-cells (Marguet et al., 1999
; Spiliotis et al.,
2000
). The intramembrane mobility of unassembled
H2KbGFP molecules was also reminiscent of the
high mobile fraction and rapid diffusion of misfolded VSVG-GFP
molecules in the ER of COS-7 (Nehls et al., 2000
). These
measurements suggested that a dynamic interaction with ER-resident
chaperones or with components of the ERAD machinery may mediate
ER-retention of unassembled/misfolded MHC class I molecules. To
identify which one of these components may be responsible for the
dynamic mode of ER retention, a pharmacological approach was taken to
inhibit association of MHC class I molecules with calnexin and to
suppress ERAD.
2m
/
cells were treated with
castanospermine (cas), an inhibitor of oligosaccharide processing that
has been shown to disrupt class I-calnexin interaction and to impair
folding of class I heavy chains (Vassilakos et al., 1996
).
Indeed, coimmunoprecipitation of calnexin-class I complexes followed by
Western blotting with antisera for calnexin and GFP showed a threefold
decrease in the number of H2KbGFP molecules
associated with calnexin (Figure 3A).
Surprisingly, this effect was not accompanied by a reduction in the
intramembrane mobility of unassembled/misfolded molecules, which
maintained rapid diffusion and a high percentage of mobile molecules
(D = 42 ± 3 × 10
10 cm2
s
1 and R = 90 ± 4%).
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Because expression of the ER-lumenal chaperone BiP has been reported to
increase upon treatment of cells with castanospermine (Balow et
al., 1995
; Pahl and Baeuerle, 1995
), detergent extracts of
2m
/
cells were blotted for BiP and
actin, which served as an internal control for equivalency of protein
content (Figure 3B). The relative amount of BiP protein was found to be
30% higher in castanospermine-treated than in untreated
2m
/
cells (Figure 3B). However, an
interaction between MHC class I molecules and BiP was unlikely to
compensate for diminished association with calnexin. Consistent with
other reports (Nossner and Parham, 1995
), murine MHC class I heavy
chains did not appear to associate with BiP.
To suppress ERAD of unassembled MHC class I molecules,
2m
/
cells were treated with
kifunensine and swainsonine, which inhibit the enzymatic activities of
ER mannosidase I and II, respectively (Gonzalez et al.,
1999
; Cabral et al., 2000
). Although a slight (~10%)
decrease was observed in their association with calnexin (Figure 3A),
diffusion and mobile fraction of H2KbGFP
molecules were not significantly affected (Table 1). Furthermore, high
mobility of H2KbGFP proteins persisted upon
treatment of
2m
/
cells with
lactacystin, which is known to inhibit proteasome-dependent ERAD
(Werner et al., 1996
; Chillaron et al., 2000
). As
shown in Figure 3B, levels of BiP expression did not change upon
treatment of cells with kifunensine, swainsonine, or lactacystin.
To see if GFP-tagged H2Kb heavy chains were
resistant to proteasomal degradation,
2m
/
cells were pulse-chased in the
presence and absence of lactacystin (Figure 3C). Using calnexin as a
negative control for proteasomal degradation, both
H2Kb and H2KbGFP were
significantly degraded after 4 h of chase (Figure 3C). Signal
decay of H2KbGFP bands was twofold higher than
that of calnexin bands, and lactacystin rescued both
H2Kb and H2KbGFP proteins
from degradation. Thus, the lack of effect on
H2KbGFP diffusion upon inhibition of ERAD was not
due to disruption of the proteasomal degradation of GFP-tagged heavy chains.
Because lateral diffusion of transmembrane proteins is proportional to
the logarithm of their radius (Hughes et al., 1982
), FRAP
measurements will report similar diffusion coefficients for freely
diffusing species whose radii differ by an order of magnitude. In
addition, autofluorescence and discontinuities in ER tubules do not
allow resolution of subtle differences in the mobile fraction of freely
diffusing molecules. Therefore, clustering of unassembled MHC class I
molecules cannot be ruled out.
To detect small clusters of unassembled/misfolded proteins,
H2Kb molecules were tagged with the cyan (CFP)
and yellow (YFP) spectral variants of GFP, and these chimeras were
transiently expressed in
2m
/
cells.
Intramembrane distribution of H2KbCFP and
H2KbYFP was imaged by FRET microscopy, a method
that was recently used to show clustering of fully assembled MHC class
I molecules for export from the ER (Pentcheva and Edidin, 2001
). In
FRET, the energy that is transferred nonradiatively from an
H2KbCFP molecule (donor) to an
H2KbYFP molecule (acceptor) results in apparent
quenching of CFP fluorescence. FRET then is measured as the percent
increase in donor fluorescence intensity after the acceptor is
destroyed by photobleaching. Because energy transfer decays with the
sixth power of the donor-to-acceptor distance, FRET is detected only
when acceptor and donor are ~100 Å or less apart.
If H2KbCFP and H2KbYFP
molecules are clustered, FRET is predicted to be independent of
acceptor concentration and to increase with high ratios of
acceptor-to-donor fluorophores (Kenworthy and Edidin, 1998
; Pentcheva
and Edidin, 2001
). In contrast, if H2KbCFP and
H2KbYFP molecules are randomly distributed, FRET
is predicted to increase with increasing acceptor concentration and to
be independent of acceptor-to-donor ratios (Kenworthy and Edidin, 1998
;
Pentcheva and Edidin, 2001
). For a mixed population of clustered and
randomly distributed molecules, FRET is expected to be dependent on
both acceptor concentration and ratio of acceptor to donor fluorophores (Kenworthy and Edidin, 1998
; Pentcheva and Edidin, 2001
).
In separate transfections, three different ratios (2:1, 1:1, and 1:2)
of plasmids encoding for H2KbYFP and
H2KbCFP were introduced in
2m
/
cells. To confirm that these
ratios were maintained during expression of H2Kb
molecules, the ratio of prebleach YFP fluorescence to postbleach CFP
fluorescence was calculated, and it was found that the range of values
for this ratio was characteristic of a particular transfection. In
Figure 4, the percent of energy transfer
between H2KbYFP and H2KbCFP
molecules increased with increasing concentration of
H2KbYFP. However, FRET did not change with
increasing ratios of acceptor to donor fluorophores. Thus,
unassembled/misfolded H2Kb molecules did not
appear to cluster in subnanometer membrane domains. Random distribution
of unassembled MHC class I molecules persisted upon treatment of
2m
/
cells with castanospermine,
swainsonine/kifunensine, and lactacystin (Figure 4,
B-D).
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Segregation of MHC Class I Molecules into a Distinct ER Membrane
Domain of ATP-depleted
2m
/
Cells
Intracellular ATP has been proposed to regulate the binding
capacity of ER-resident chaperones such as BiP and calnexin (Hendershot et al., 1996
; Ihara et al., 1999
), the assembly of the ERAD
machinery (McCracken and Brodsky, 1996
; Wilson et al.,
2000
), and perhaps, through these, the structure of an ER matrix
(Hendershot et al., 1995
; Tatu and Helenius, 1997
). Because
separately, inhibition of MHC class I-calnexin association and
suppression of ERAD did not have any effect on the dynamic mechanism of
ER retention, their collective involvement was assessed by depriving
2m
/
cells of metabolic energy.
On incubating cells in glucose-free medium containing
2-deoxy-D-glucose (dog) and sodium azide, there was a 20%
decrease in the association of H2KbGFP molecules
with calnexin (Figure 3A). Furthermore, the amount of BiP protein
doubled (Figure 3B), which was consistent with previous reports showing
elevated BiP expression in response to glucose deprivation and
defective protein folding (Pouyssegur et al., 1977
;
Kozutsumi et al., 1988
). Measurements of lateral diffusion
showed a twofold reduction in the mobile fraction of H2KbGFP molecules (Table 1), which was suggestive
of aggregation or irreversible association with immobile components of
the ER. However, FRET microscopy failed to detect any clustering, and the immobile species maintained random distribution within the ER
membrane of ATP-depleted cells (Figure 4E).
Because aggregation of unassembled molecules was inconsistent with lack
of clustering, ER membrane morphology was examined for distortions,
which may have caused the apparent low mobility of
H2KbGFP by isolating them in domains. Untreated
and ATP-depleted
2m
/
(untransfected) cells were labeled with the fluorescent dye DiOC6, which stains the ER and mitochondria of fixed cells (Terasaki et
al., 1986
). DiOC6-labeled cells were imaged by deconvolution microscopy. ATP-depleted cells appeared smaller in size, and their ER
was somewhat retracted from the periphery of the cell; however, no
obvious defects such as vesiculation and fragmentation were observed
(our unpublished results). Consistent with these observations, the
diffusion of a small lipophilic probe was recently shown to remain
unchanged upon ATP depletion, suggesting that ER membrane geometry does
not account for low fluorescence recovery (Levin et al.,
2001
).
To explore the possibility that unassembled/misfolded molecules were
segregated into subregions of the ER where they remained randomly
distributed,
2m
/
KbGFP cells were imaged by confocal microscopy.
In ATP-depleted cells, H2KbGFP molecules lost
their reticular distribution (Figure 5, A
and G) and appeared to accumulate in a juxtanuclear region of at least 5 µm in diameter (Figure 5, D and J). Some
H2KbGFP fluorescence was observed in tubular
elements throughout the cytosol. In this dramatic redistribution, MHC
class I molecules were accompanied by calnexin, which maintained nearly
perfect colocalization with H2KbGFP (Figure 5F).
Within 30 min after the return of cells to glucose-containing medium,
H2KbGFP molecules assumed their original
reticular distribution (our unpublished results). Therefore, the region
of MHC class I/calnexin accumulation appeared to be an ER-associated
membrane domain.
|
The location of this domain with respect to the Golgi apparatus was
examined by staining for the medial- and trans-Golgi marker protein
-mannosidase II. In untreated cells,
-mannosidase II was
predominately localized to juxtanuclear ribbon-like elements reminiscent of Golgi stacks (Figure 5H, arrow). On ATP-depletion,
-mannosidase II did not change its juxtanuclear position. However, the ribbon-like elements became discontinuous (Figure 5, K and L) and
they appeared to be at the periphery of the region where H2KbGFP molecules were heavily accumulated (see
inset in Figure 5L).
To see if this region was a distinct ER membrane domain associated with
the transitional ER (ER-exit sites) or the ERGIC, ATP-depleted
2m
/
KbGFP
cells were stained for p137 and p58. The p58-stained ERGIC elements
lost their compact juxtanuclear localization (Figure 1H), and they
appeared scattered throughout the cytosol (Figure 6B). These structures were clearly
excluded from H2KbGFP-containing regions (Figure
6C). In contrast, although some p137 puncta were seen, presumably at
exit sites, most of the p137 molecules became concentrated in regions
that contained H2KbGFP (Figure 6F). The position
and extent of these areas were similar to that observed for
concentrations of calnexin and H2KbGFP (Figure
5F) and are therefore distinct from classical ER exit sites. This
juxtanuclear concentration of MHC class I and COPII molecules was
dependent on microtubules. When cells were depleted of ATP in the
presence of nocodazole, H2KbGFP appeared in local
patches throughout the cytoplasm but did not collapse to a single
juxtanuclear region (Figure 6G). COPII puncta remained throughout the
cytoplasm (Figure 6H), and only a fraction of
H2KbGFP molecules colocalized with perinuclear
patches of COPII (yellow in Figure 6I). This effect was specific to ATP
depletion, because treatment of cells with nocodazole alone had no
effect (our unpublished results).
|
To see if our observations were due to the collapse of the ER around
the microtubuke organizing center (MTOC), ATP-depleted
2m
/
cells that expressed native
H2Ld molecules were labeled with DiOC6 and
stained for unassembled H2Ld (Figure 6, J and K).
As shown in Figure 6L, the region where MHC class I molecules
accumulated occupied only a fraction of the overall DiOC6-stained ER
membrane. Furthermore, when H2Ld expressing
2m
/
cells
were stained for the glycoprotein
glucosyltransferase, a soluble ER-resident protein, the peripheral ER
was visibly intact (see reticular morphology in the inset of Figure
7A), despite heavy accumulation of
H2Ld molecules in a juxtanuclear region (Figure
7B). As shown in Figure 7C, extended regions of the peripheral ER (in
green) did not contain any H2Ld fluorescence (in
yellow). Because upon prolonged inhibition of proteasome activity, free
MHC class I heavy chains have been observed to accumulate in a novel ER
quality control compartment that contains ER resident chaperones
including calnexin (Kamhi-Nesher et al., 2001
), we asked if
this compartment contained COPII similar to our observations in
ATP-depleted cells. Indeed, upon treating
2m
/
KbGFP
cells with lactacystin for 4 h, H2KbGFP
molecules accumulated in a juxtanuclear compartment that contained COPII (Figure 7, D-F). Therefore, concentration of MHC class I molecules, ER-resident chaperones, and COPII in an ER-associated compartment was not due to a nonspecific collapse of the ER. As shown
in Figure 7, G-L, this compartment was also present in
2m-expressing L-cells, where H2KbGFP molecules
are not targeted for proteasomal degradation. ATP depletion of L-cells
caused significant accumulation of H2KbGFP and
calnexin molecules in a juxtanuclear ER subcompartment (Figure 7,
J-L).
|
| |
DISCUSSION |
|---|
|
|
|---|
Although much is known about assembly and ER-export of nascent proteins, there is a dearth of information about the mechanism(s) that mediate ER retention and degradation of unassembled/misfolded molecules. Moreover, it is unknown how the ER membrane is organized to retain and purge defective products of protein synthesis without disrupting normal biosynthesis and export.
Here, the intramembrane milieus of the ER were probed by visualizing
the mobility and distribution of unassembled MHC class I molecules in
2m-deficient cells. Unfolded molecules did not exit the ER. The
mechanism of restriction appeared to be highly dynamic, and it did not
involve sequestration or clustering into distinct membrane domains. It
was reasoned that the dynamic phenotype might be due to association
with ER-resident chaperones and the molecular machinery of ERAD.
However, upon inhibition of these processes, no visible change was
observed. To assess if this phenotype was sustained by ER-resident
factors that require a continuous input of metabolic energy, cells were
deprived of ATP. Unassembled molecules became immobile and were found
sequestered in an ER-associated membrane domain.
Previous studies have indicated that misfolded MHC class I proteins are
predominately localized to the ERGIC (Hsu et al., 1991
; Baas
et al., 1992
; Raposo et al., 1995
). In these
reports, only Hsu et al. (1991)
examined localization of MHC
class I molecules in response to defective association with
2m. By
using an interferon-
-inducible carcinoma cell line, the authors
concluded that unassembled H2Kd molecules rapidly
recycle between the ER and the Golgi apparatus. Although some
unassembled MHC class I molecules are found at ER-exit sites and the
ERGIC, our results show that most unfolded molecules do not accumulate
at exit sites and do not leave the ER. This discrepancy may be due to
differences in the cell lines and the MHC class I alleles used (Potter
et al., 1984
; Klar and Hammerling, 1989
). However, exclusion
of unassembled MHC class I molecules from vesicular traffic agrees with
recent evidence showing that in contrast to the degradation of soluble
proteins, vesicular transport between the ER and the Golgi is not
required for degradation of transmembrane proteins (Caldwell et
al., 2001
; Vashist et al., 2001
).
Consistent with reports on the intramembrane mobility of ts045 VSVG, a
misfolded protein that also fails to exit the ER (Storrie et
al., 1994
; Nehls et al., 2000
), MHC class I molecules
were highly mobile in the ER membrane of
2m
/
cells. FRET microscopy ruled
out the possibility that unassembled molecules clustered into rapidly
diffusing aggregates of
100 Å in diameter. However, dimeric
association of unassembled heavy chains cannot be ruled out (Capps
et al., 1993
; Vassilakos et al., 1996
). Detection
of clusters by FRET depends on the ratio of acceptor to donor
fluorophores; therefore, dimeric associations, whose 1:1 ratio is
always the same, will give the same FRET curves as a random
distribution of monomers. Dimerization may also account for the lack of
aggregation or clustering, upon treatment of cells with castanospermine.
It is also possible that calnexin-free MHC class I heavy chains were
degraded or simply became associated with other ER-resident chaperones.
Several studies have shown accelerated degradation of misfolded
molecules in response to treatment with glucosidase inhibitors (Moore
and Spiro, 1993
; Hebert et al., 1996
; Wilson et
al., 2000
). If MHC class I heavy chains were degraded, free cytosolic GFP should have increased the apparent D and R of
H2KbGFP. Therefore, it is more likely that after
dissociation from calnexin, MHC class I molecules became associated
with other ER-resident chaperones, which maintained a dynamic mechanism
of ER-retention. In support of this interpretation, expression of MHC
class I has been shown to proceed in the absence of glucose trimming
and calnexin (Balow et al., 1995
; Scott and Dawson, 1995
).
Furthermore, elevated BiP expression was indicative of an induced
unfolded protein response (UPR), which is known to upregulate the
expression of several chaperones (Pouyssegur et al., 1977
;
Kozutsumi et al., 1988
; Ng et al., 2000
). These
proteins may compensate for loss of MHC class I association with calnexin.
On inhibition of ERAD, human MHC class I molecules have been observed
to associate with ER-resident chaperones such as BiP, protein disulfide
isomerase, and ERp57 (Wilson et al., 2000
). After treating
2m
/
KbGFP
cells with inhibitors for ER mannosidases and the proteasome, lack of
immobilization or clustering suggests that association with other
chaperones prevented the aggregation of unfolded MHC class I molecules.
Because recent evidence shows that Hsp70 facilitates the degradation of
the cystic fibrosis transmembrane conductance regulator (CFTR; Zhang
et al., 2001
), the role of cytosolic heat shock proteins
cannot be excluded from such scenario. Overall, molecular chaperones
appear to be intimately involved in the retrotranslocation and
degradation of misfolded proteins (Nishikawa et al., 2001
); therefore, abolishing mannose trimming and proteasome activity may not
alone be enough to cause aggregation and/or clustering of unassembled
MHC class I molecules.
Our results suggest that high intramembrane mobility appears to be the preferred state for transmembrane proteins that are not properly folded. When cells are depleted of metabolic energy, unassembled molecules appear to segregate into an ER subdomain that contains calnexin and COPII, suggesting that this domain is associated with the rough and transitional ER.
The size and irregular shape of our calnexin/MHC class I-containing ER
domain (Figures 5 and 6) are markedly different from CFTR-containing
aggresomes (Johnston et al., 1998
), mutant
huntingtin-containing degrasomes (Waelter et al., 2001
), and
the
-COP-containing fibrillar aggregates of anoxic pancreatic
acinar cells (Hendricks et al., 1993
). Rather, this membrane
domain closely resembles a "quality control" compartment, which was
recently found to contain calnexin and calreticulin, and the Sec61
translocon, as well as the precursor of the human
asialoglycoprotein receptor H2a and free MHC class I heavy chains
(Kamhi-Nesher et al., 2001
). Similar to the studies of
Kamhi-Nesher et al. (2001)
, this compartment became visible only upon prolonged (4-5 h) inhibition of the proteasome, and here, it
was shown to contain COPII (Figure 7, D-F).
Because, upon ATP-depletion, this compartment contained both calnexin
and COPII, it appears to be an ER subdomain different from the
COPII-containing ER exit sites, which at steady state do not include
any calnexin molecules (Cannon and Helenius, 1999
). Immuno-EM studies
by Schekman and coworkers have revealed that ER exit sites are marked
by a membrane bound fraction (~20%) and by a large cytoplasmic pool
of COPII that appears to be adjacent to membranes of the transitional
zone, as if tethered to a cytoskeletal framework (Orci et
al., 1991
). These cytosolic pools of COPII may be free to relocate
on new membrane domains during ATP-depletion or treatment with
lactacystin as shown in Figures 6, D-F, and 7, D-F, respectively.
Segregation of unfolded MHC class I molecules into a distinct membrane
domain may be a temporary adaptation to conditions of cell stress.
To conclude, in contrast to a model of molecular aggregation and
sequestration (Hurtley and Helenius, 1989
), unassembled and misfolded
MHC class I proteins appear to maintain a state of high intramembrane
mobility. The results of this work imply that several ATP-dependent
mechanisms are in effect to maintain high mobility and random
distribution of unfolded species. Perhaps, this is the most efficient
method to degrade defective products of protein synthesis without
interfering with normal biosynthesis. Recent studies indicate that
restricted diffusion and clustering are respectively reserved for the
assembly and ER-export of nascent MHC class I molecules (Marguet
et al., 1999
; Spiliotis et al., 2000
; Pentcheva
and Edidin, 2001
). Therefore, ER membrane domains appear to mediate
specialized events of protein biosynthesis such as oligomerization and export.
| |
ACKNOWLEDGMENTS |
|---|
The authors thank Drs. Ann Hubbard, Jaakko Saraste, Marilyn Farquhar, Ted Hansen, Armando Parodi, and Mark Terasaki for their kind donations of reagents; Dr. Stephen Gould for the SV40 T-Ag reagent and expert advice on cell transformation; Michael McCaffery and Gerry Sexton (The Johns Hopkins Integrated Imaging Center) for cell imaging by electron microscopy; Ms. Taiyin Wei and Dr. Qing Tang for various technical support; Drs. Martha Zúñiga (UCSC) and Carolyn Machamer (JHMI) for helpful comments and suggestions. This work was supported by National Institutes of Health grant AI14584 to M.E.
| |
FOOTNOTES |
|---|
* Corresponding author. E-mail address: edidin{at}jhu.edu.
DOI: 10.1091/mbc.01-07-0322.
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REFERENCES |
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