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Vol. 14, Issue 1, 26-39, January 2003


Department of Biochemistry and Molecular Biology, Louisiana State University Health Sciences Center, Shreveport, Louisiana 71130
Submitted June 30, 2002; Revised October 4, 2002; Accepted October 10, 2002| |
ABSTRACT |
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Bni4 is a scaffold protein in the yeast Saccharomyces cerevisiae that tethers chitin synthase III to the bud neck by interacting with septin neck filaments and with Chs4, a regulatory subunit of chitin synthase III. We show herein that Bni4 is also a limiting determinant for the targeting of the type 1 serine/threonine phosphatase (Glc7) to the bud neck. Yeast cells containing a Bni4 variant that fails to associate with Glc7 fail to tether Chs4 to the neck, due in part to the failure of Bni4V831A/F833A to localize properly. Conversely, the Glc7-129 mutant protein fails to bind Bni4 properly and glc7-129 mutants exhibit reduced levels of Bni4 at the bud neck. Bni4 is phosphorylated in a cell cycle-dependent manner and Bni4V831A/F833A is both hyperphosphorylated and mislocalized in vivo. Yeast cells lacking the protein kinase Hsl1 exhibit increased levels of Bni4-GFP at the bud neck. GFP-Chs4 does not accumulate at the incipient bud site in either a bni4::TRP1 or a bni4V831A/F833A mutant but does mobilize to the neck at cytokinesis. Together, these results indicate that the formation of the Bni4-Glc7 complex is required for localization to the site of bud emergence and for subsequent targeting of chitin synthase.
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INTRODUCTION |
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Chitin, an N-acelylglucosamine polymer, is a minor yet
essential component of the yeast cell wall (Bulawa, 1993
). In
vegetative cells, chitin is deposited in a ring that marks the site of
the bud emergence in late G1, and it forms the primary septum at
cytokinesis. Three enzymes are responsible for the synthesis of chitin
(Smits et al., 2001
). Chitin synthase III (Chs3), which
produces the majority of chitin, lays down the polymer in the lateral
wall, and forms the chitin ring at bud emergence (Choi et
al., 1994b
; Chuang and Schekman, 1996
; Cos et al.,
1998
). Chs3 is also responsible for the synthesis of chitin during
mating and sporulation (Bulawa, 1992
; Pammer et al., 1992
).
Chitin synthase II (Chs2) synthesizes chitin that constitutes the
primary septum (Sburlati and Cabib, 1986
; Silverman et al.,
1988
). Chs1 is a repair enzyme that counteracts hydrolysis of chitin
caused by chitinase (Cabib et al., 1989
). Chs1 and Chs2 are
regulated primarily at the transcriptional level (Choi et
al., 1994a
), whereas Chs3 is metabolically stable and is regulated
posttranscriptionally (Chuang and Schekman, 1996
), by periodic
deposition at the cell surface and recruitment to the incipient bud
site in G1 followed by endocytosis later in the cell cycle and
redistribution to the mother-bud neck at cytokinesis. Chs3 protein
resides in endosomal-like compartments referred to as chitosomes (Ziman
et al., 1996
, 1998
).
A number of proteins have been identified that are necessary for the
proper activity of Chs3. Chs7 is involved in the export of Chs3 from
the ER (Trilla et al., 1999
), whereas Chs5 and Chs6 are
required for the proper delivery of Chs3 to the plasma membrane (Santos
and Snyder, 1997
; Ziman et al., 1998
; Valdivia et
al., 2002
). Chs4 is a regulatory subunit essential for chitin
synthase III activity (Trilla et al., 1997
; Ono et
al., 2000
) and is also responsible for the deposition of Chs3 at
the incipient bud site by physically linking Chs3 to the septin ring
through the interaction with the scaffolding protein Bni4 (DeMarini
et al., 1997
). Bni4 first appears at the site of bud
emergence before budding and remains on the mother side of the bud
until late in the cell cycle. Its accumulation at the bud neck is
dependent upon septins, a family of GTP binding proteins that form the
bud neck filaments (Longtine et al., 1996
). Chitin
deposition is delocalized in bni4 null mutants, due in part
to a failure to tether Chs3 and Chs4 to the bud neck. Hence, the
deposition of chitin at the bud neck is regulated not only by the
controlled delivery of Chs3 to the plasma membrane from chitosomes but
also through Bni4-dependent targeting of chitin synthase to the septin
filaments at the bud neck.
Bni4 has also been found to associate with Glc7, the catalytic subunit
of protein phosphatase type 1 (PP1), in two-hybrid screens (Tu et
al., 1996
; Uetz et al., 2000
) and in a pull-down assay
(Walsh et al., 2002
). PP1 is a highly conserved eukaryotic serine-threonine phosphatase that is involved in a wide range of
physiological processes ranging from glycogen metabolism to protein
synthesis (reviewed in Shenolikar, 1994
; Stark, 1996
). Its location
through the cell cycle is dynamic (Andreassen et al., 1998
;
Bloecher and Tatchell, 2000
). Glc7 is found in
the nucleus throughout the cell cycle and is most abundant in the nucleolus. At the start of anaphase, Glc7 accumulates at either the
spindle pole bodies or the kinetochores and transiently
appears at the actomyosin ring during cytokinesis. Glc7 also
accumulates in a ring at the site of bud formation before bud emergence
and remains largely on the mother side of the bud until late in the cell cycle (Bloecher and Tatchell, 2000
).
The specificity of PP1 is largely determined by regulatory subunits
that either target the catalytic subunit of PP1 to the specified
substrate or alter its activity toward a specific substrate (Bollen and
Stalmans, 1992
). Many of these subunits contain the short consensus
sequence R/K-V/I-X-F, referred to as the RVXF motif for the conserved
valine/isoleucine and phenyalanine residues, that associates with a
hydrophobic groove on PP1c (Egloff et al., 1997
). Missense
mutations in the RVXF motif result in loss of PP1c-binding activity in
mammals (Egloff et al., 1997
; Kwon et al., 1997
;
He et al., 1998
; Beullens et al., 1999
;
Hsieh-Wilson et al., 1999
; Huang et al., 1999
)
and yeast (Alms et al., 1999
; Dombek et al.,
1999
; Wu et al., 2001
). A common PP1c-binding motif on many
targeting subunits ensures competitive binding between subunits.
However, it is not known how the distribution between different
targeting subunits is regulated and in most cases it is not known
whether the dynamic changes in location of PP1c are controlled by
targeting subunits. The association of Glc7 and Bni4 in two-hybrid and
pull-down assays and the apparent colocalization of both at the bud
neck led us to hypothesize that Bni4 may act as a scaffold to tether
Glc7 to the bud neck. We report herein that Bni4 is indeed limiting for
the association of Glc7 to the bud neck and may have a codependent role
with Glc7 in associating with the septin ring. We also extend the
analysis of Bni4, showing that it is necessary for the mobilization of
Chs4 to the incipient bud site but that it is not required to mobilize
Chs4 to the neck at cytokinesis.
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MATERIALS AND METHODS |
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Yeast Strains, Media, and General Methods
The yeast strains used in this work are listed in Table
1 and are congenic to KT1112
(MATa ura3-52 leu2 his3; Stuart et al., 1994
) or to KT1358 (MAT
ura3 leu2 his3
trp1), with the exception of DLY222 (Bose et al., 2001
)
and PJ69-4A (James et al., 1996
). Yeast strains were grown
on YPD medium (2% Bacto peptone, 1% yeast extract, 2% glucose) at
30°C, except where noted. Strains were sporulated at 24°C on medium
containing 2% Bacto peptone, 1% yeast extract, and 2% potassium
acetate. Synthetic complete medium and media lacking specific amino
acids were made as described previously (Sherman et al.,
1986
). Yeast transformations, manipulation of Escherichia
coli and the preparation of bacterial growth media were performed
as described previously (Maniatis et al., 1989
; Kaiser
et al., 1994
). The G1 cyclin deprivation arrest and release assays were performed as described previously (Cross and Tinkelenberg, 1991
). Strains YLK74 and YLK76 were created by ectopic expression of
Bni4 and Bni4V831A F833A
(Bni4V-A/F-A) at the URA3 locus.
Sequences encoding Bni4 and Bni4V-A/F-A were
removed from p366 and pAR17 (DeMarini et al., 1997
) and ligated to XhoI, SpeI-cut pRS306, thus creating
pLK8 and pLK9. Strain KT1918 was transformed with
StuI-digested pLK8 or pLK9 and colonies were selected on
SC-Ura plates. To create YLK78, strain KT1918 was transformed with
StuI-digested pRS306.
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Integrated green fluorescent protein (GFP) fusions were made according
to the method described by the Yeast Resource Center at the University
of Washington (http://depts.washington.edu/~yeastrc/fm_home3.htm), which is based on the method described by Wach et al.
(1997)
. The GFP-integration cassettes were amplified by polymerase
chain reaction by using primers BGFP1 and BGFP2 for Bni4-GFP, CDC10F and CDC10R for Cdc10-GFP, CDC12F and CDC12R for Cdc12-GFP, and pLK3,
pDH3, or pDH5 as templates for GFP, cyan fluorescent protein (CFP), and
yellow fluorescent protein (YFP)-fusions, respectively (Primers are
listed in Table 2). Cells were
transformed with the amplified DNA and colonies were selected on
G418-containing YEPD (GFP and CFP) or SC-His (YFP).
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Plasmid Construction
Plasmids are listed in Table 3.
Standard techniques were used for DNA manipulation (Maniatis et
al., 1989
). Restriction and modification enzymes were used as
recommended by the manufacturers (Promega, Madison, WI). The Sequenase
enzyme (U.S. Biochemical, Cleveland, OH) and dideoxy chain termination
method (Sanger et al., 1977
) were used with synthetic
oligonucleotide primers (Integrated DNA Technologies, Coralville, IA)
to obtain DNA sequence from double-stranded templates. Two-hybrid
constructs were made in the pGAD series of vectors (James et
al., 1996
). pAR5 was created by cloning a PstI fragment
(codons 70-892) from p366 (DeMarini et al., 1997
) into
pGADC1. Full-length Bni4 (pAR16), truncated Bni4 (pAR14), and
Bni4V831A/F833A (pAR19) two-hybrid plasmids were
obtained by PCR by using Bni4-up-2, Bni4-D-2, and Bni4t-2 primers, and
p366 or pAR17 as templates. The resulting PCR products were digested
with SmaI and cloned into pGADC1. To obtain pAR17, the
QuikChange kit (Stratagene, La Jolla, CA) and primers VFA-1 and VFA-2
were used as recommended for site-directed mutagenesis of the VXF motif
of BNI4 in p366. Mutations were screened by DNA sequence
analysis. The entire sequence of the mutant allele was confirmed at
Iowa State University DNA facility (Ames, IA). To construct a brighter
version of GFP-Chs4, an XbaI-EcoRV fragment
containing GFP-CHS4 was isolated from p326 and ligated to
XbaI-SmaI-digested pUC18. A
NcoI-PvuII fragment that contains mutations
encoding a brighter version of GFP (Robinson et al., 1999
)
was used to replace the corresponding fragment of the original GFP. An
XbaI-SacI fragment containing GFP-CHS4
was cloned into pRS315 and pRS313, giving pAR24 and pAR26. To obtain a
GST-Bni4 fusion under control of the GAL1 promoter, restriction sites
were introduced upstream (SmaI) and downstream
(HindIII) of the Bni4 sequence by PCR by using primers GST1
and GST2, and either p366 for the wild type (wt) or pAR17 for the
Bni4V-A/F-A mutant as templates. The resulting
amplicons were ligated into SmaI-HindIII-digested pEG(KG) (Mitchell et
al., 1993
), creating either pLK4 (BNI4) or pLK6
(bni4V-A/F-A). Plasmid pLK3 was created by exchanging the
BamHI-BssHI CFP-encoding fragment of pDH3 (Yeast Resource Center, University of Washington) for the sequence encoding GFP, which was created by PCR by using primers GFP3F and GFP4R and
pTII6 (Robinson et al., 1999
) as a template.
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Immunoprecipitation and Alkaline Phosphatase Reactions
Immunoprecipitation of Bni4 and Glc7 (Figure
1B) was modified from Stuart et
al. (1994)
. Briefly, cells were grown to mid-log phase and 50 ml
was harvested. All subsequent steps were performed at 4°C. Cells were
washed in breaking buffer (100 mM Tris, 200 mM NaCl, 1 mM EDTA, 5%
glycerol, pH 7.0) and resuspended in 0.6 ml of breaking buffer plus
0.5% Triton X-100, 1:300 dilution protease inhibitor cocktail (1 mg of
leupeptin, chymostatin, antipain, and pepstatin A in 4 ml of 50%
ethanol) and 1:100 dilution of phenylmethylsulfonyl fluoride (PMSF)
(saturated solution in ethanol). An equal volume of glass beads was
added and cells were broken by vortexing for 10 min. The cell debris
was pelleted and the supernatant transferred to a new tube. Protein
G-Sepharose beads (25 µl) in radioimmunoprecipitation assay (RIPA)
buffer without SDS (50 mM Tris pH 7.0, 1% Triton X-100, 0.5% sodium
deoxycholate, 200 mM NaCl) was added to 90 µl of supernatant and the
mixture was incubated for 1 h with rocking. The beads were
pelleted, supernatant was transferred to a new tube containing primary
antibody, and this solution was rocked 1 h. Protein G-Sepharose
(25 µl) was added and incubated for another hour. Immunoprecipitates
were pelleted and washed four times in 25% breaking buffer/75% RIPA buffer without SDS and with protease inhibitors as described above, and
once in 0.5 M Tris, 0.5 M NaCl, pH 7.0. The beads were resuspended in
an equal volume of 2× sample buffer (62.5 mM Tris pH 6.8, 25% glycerol, 2% SDS, 0.01% bromophenol blue, 5%
-mercaptoethanol), boiled for 3 min, and electrophoresed on 10%
polyacrylamide-SDS gels. After electrophoresis, proteins were
transferred to nitrocellulose for immunoblotting with
subsequent detection by using the enhanced chemiluminescence system
(Amersham Biosciences, Piscataway, NJ). GFP-Glc7 was immunoprecipitated
with polyclonal GFP antibody (kindly provided by Dr. Nathan Davis,
LSUHSC, Shreveport, LA) and detected with monoclonal anti-GFP
from Molecular Probes (Eugene, OR). Bni4 was immunoprecipitated and
immunoblotted with polyclonal anti-Bni4 (DeMarini et
al., 1997
). For the immunoprecipitation of Bni4, which preceded
phosphatase treatment (Figure 8A), the following protocol was used.
Cultures were grown to logarithmic phase, and cells were collected by
centrifugation and resuspended in 3 volumes of ice-cold breaking buffer
(100 mM Tris, 200 mM NaCl, 1 mM EDTA, 5% glycerol, pH 7.0-7.1)
containing 1 mM PMSF and protease inhibitor cocktail (1 ml/20 g of wet
cell pellet; Sigma-Aldrich, St. Louis, MO). Three volumes of glass
beads were added and cells were shaken on a Mini-beadbeater (Biospec
Products, Bartlesville, OK) four times for 30 s with 1-min breaks
on ice. Cell lysates were transferred to fresh tubes. Four volumes of
breaking buffer were used to wash the beads by vortexing for 5 s,
after which the wash supernatant was combined with the cell lysates.
Lysates were cleared by centrifugation for 20 min at 14,000 rpm (4°C)
and supernatants were transferred to fresh tubes. Antibody-conjugated
beads were prepared by adding 2 µl of the primary antibody (
-Bni4)
to a mixture of 90 µl of 50% protein G slurry (Invitrogen,
Carlsbad, CA; beads were first washed and then resuspended in RIPA
buffer: 50 mM Tris pH 7.0, 1% Triton X-100, 0.5% sodium deoxycholate,
200 mM NaCl) and 0.5 ml of ice-cold phosphate-buffered saline. Mixtures
were tumbled at 4°C for 1 h, and then washed twice with ice-cold
RIPA buffer. Cell lysate was precleared with 50% protein G-agarose
slurry at 4°C for 30 min. The beads were pelleted and the supernatant
was added to the antibody-conjugated beads. Samples were incubated at
4°C for 1 h. Beads were pelleted and washed four times with a
mixture of 25% RIPA and 75% breaking buffer and once with calf intestinal alkaline phosphatase (CIP) buffer (50 mM Tris-HCl, pH 8.0, 1 mM MgCl2, 0.1 mM ZnCl2)
containing 1 mM PMSF and the protease inhibitor cocktail.
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In vitro dephosphorylation was done as described previously (Stuart
et al., 1994
) with minor modifications. After
immunoprecipitation, beads were resuspended in 30 µl of CIP buffer.
Reaction mixtures were then incubated with or without the addition of
15 U of CIP (New England Biolabs, Beverely, MA) at 37°C for 15 min. A
parallel reaction was carried out in phosphatase buffer containing CIP and 10 mM sodium orthovanadate (Sigma-Aldrich) as a phosphatase inhibitor. Immunoblots of these samples were visualized
using a phosphorimager.
Microscopic Analysis
Time-lapse imaging of cells was performed as described
previously (Bloecher and Tatchell, 1999
) by using either a Roper
MicroMAX or CoolSNAP HQ charge-coupled device camera. For imaging GFP, a 41001 filter set was used (Chroma Technology, Brattleboro, VT). For
dual fluorescence imaging of CFP and YFP, a JP4 filter set (Chroma
Technology) was used in which the excitation and emission filters were
placed in separate computer-controlled filter wheels (Ludl Electronic
Products, Hawthorne, NY). Image analysis, filter wheels, shutters, and
Z axis stepping motor were controlled by IPlab Spectrum software
(Scanalytics, Fairfax, VA). To measure fluorescence resonance energy
transfer (FRET), images were acquired for YFP fluorescence (excitation
500 nm, emission 535 nm), CFP fluorescence (excitation 436 nm, emission
470 nm), and FRET fluorescence (excitation 436 nm, emission 535 nm).
The signal in the FRET channel due to YFP and CFP alone was subtracted
from the FRET signal by using IPlab software. To quantify GFP
fluorescence, the average fluorescence in a small region consisting of
4 to 13 adjacent pixels was measured using the CoolSNAP HQ
charge-coupled device camera. Care was taken not to photobleach the
sample before image acquisition. Background fluorescence was subtracted
from each measurement.
Indirect immunofluorescence was performed as described previously
(Pringle et al., 1991
) with the following modifications. Cells were fixed in 5% formaldehyde, washed once with PBS, and once
with solution A (100 mM KPO4 pH 6.5, 0.5 mM
MgCl2, 1.2 mM sorbitol). Cells were permeabilized
in solution A containing 5.5% of
-glucuronidase/arylsulfatase
(Roche Diagnostics, Indianapolis, IN) and 1%
-mercapto-ethanol at
37°C for 1 h. Cells were stained with anti-Bni4 (DeMarini
et al., 1997
). Calcofluor white staining was done as
described previously (Robinson et al., 1999
).
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RESULTS |
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Bni4 Is a PP1/Glc7 Targeting Subunit
To determine whether Bni4 tethers Glc7 to the bud neck, we first
confirmed the Bni4-Glc7 interaction by using two-hybrid, coimmunoprecipitation, and FRET assays (Figure 1). For the FRET assay
and subsequent analysis of Bni4 in live cells, we constructed BNI4-GFP fusions by using vectors that integrated either the
blue-shifted variant CFP, enhanced GFP, or the red-shifted variant YFP
directly before the stop codon of the BNI4 open reading
frame. The fusions were functional, as judged by normal chitin
deposition and morphology in cells containing the fusions. In agreement
with the location of native Bni4 detected by immunofluorescence
(DeMarini et al., 1997
), Bni4-GFP was often found on the
cortex of unbudded cells, on the mother side of the bud neck in cells
with small and medium-sized buds, and at a lower concentration on both
sides of the neck in cells with large buds.
The FRET assay between a blue-shifted variant of GFP (Bni4-CFP) and the
red-shifted GFP variant 10C/YFP (YFP-Glc7) (Bloecher and Tatchell,
2000
) was performed by assaying the increase in YFP emission after CFP
excitation. A clear FRET signal at the bud neck was only observed when
both Bni4-CFP and YFP-Glc7 were expressed in the same cells (Figure 1C)
and indicates that the GFP domains of the fusions are no more than 75 Å apart (Selvin, 1995
). These results confirm that Bni4 interacts with
Glc7 at the bud neck. Bni4 contains a putative RVXF Glc7-binding motif near its COOH terminus (G830VRF). To assess
whether this sequence is necessary for Glc7 binding, we constructed
missense mutations, in which the conserved valine (V831) and phenylalanine
(F833) residues were changed to alanine.
Valine-to-alanine and phenylalanine-to-alanine substitutions in the
RVXF motif of known Glc7 binding proteins reduce or eliminate Glc7
binding (Bollen, 2001
). The resulting protein,
Bni4V831A/F833A, hereafter referred to as
Bni4V-A/F-A, fails to associate with Glc7 in
two-hybrid and IP assays (Figure 1, A and B). These results confirm
that the RVXF motif in Bni4 is necessary for Glc7 binding.
To determine whether Bni4 is necessary for the accumulation of GFP-Glc7
at the incipient bud site or later in the cell cycle at the bud neck,
we assayed the location of GFP-Glc7 in wild-type, bni4V-A/F-A, and
bni4::TRP1 strains. GFP-Glc7 does not accumulate
at the bud neck of small- and medium-budded cells in either the
bni4::TRP1 (Figure
2A and attached video) or
bni4V-A/F-A mutant (our unpublished
data). These results show that Bni4 is required to localize Glc7
to the bud neck and place Bni4 in a growing family of PP1/Glc7
targeting subunits. However, GFP-Glc7 does accumulate at the actomyosin
ring, irrespective of the BNI4 genotype, indicating that the
mechanism responsible for targeting Glc7 to the neck at cytokinesis is
Bni4 independent. In addition to accumulating at the bud neck, Glc7
appears at the base of mating projections (Bloecher and Tatchell, 2000
)
and accumulates at the prospore wall (Tachikawa et al.,
2001
) in a septin-dependent manner. We imaged MATa
bni4::TRP1 GFP-GLC7 cells that had been arrested with alpha factor and MATa/MAT
bni4::TRP1/bni4::TRP1 GFP-GLC7 diploid cells
that had been induced to sporulate, but observed no difference in the
location of GFP-Glc7 between bni4 null mutants and the wild
type (our unpublished data). Bni4 is therefore strictly required
for septin-dependent localization of Glc7 in mitotically growing cells.
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To find out whether Bni4 is a limiting determinant for Glc7 recruitment to the bud neck, we transformed a GFP-GLC7 strain with low- and high-copy plasmids expressing BNI4 and quantified the levels of GFP-Glc7 at the bud neck, in the cytoplasm, and in the nucleus. Increased gene dosage of BNI4 results in a significant increase in GFP-Glc7 at the bud neck, but not in the cytoplasm, or in the nucleus (Figure 2, B and C). Bni4 is therefore the limiting determinant for the targeting of Glc7 to the bud neck.
The morphology of cells expressing high levels of Bni4 (Figure 2B) is
reminiscent of cells with defects in septin organization (DeMarini
et al., 1997
). To investigate the effects of Bni4
overexpression, we expressed a GST-Bni4 fusion to high levels by using
a GAL1 promoter and monitored septin structure by using a
Cdc10-GFP fusion. Overexpression of GST-Bni4 caused slow growth (our
unpublished data) and induced an altered morphology similar to
that found with strains expressing high-copy BNI4 plasmids.
Growth of these cells in galactose resulted in disorder and then loss
of Cdc10-GFP at the bud neck (Figure 3).
Cdc10-GFP accumulated in diffuse punctate structures and longer strands
at 2 h of induction. After 5 h of induction, short bars and
arcs of Cdc10-GFP were common and a few small circles were observed. At
longer periods of induction, Cdc10-GFP accumulated at the cell surface
in small rings of fairly uniform size and intensity (Figure 3, C and
D). These ring structures are unlikely to be due to the accompanying
Glc7 because the same morphological perturbations and aberrant septin
structures are also observed upon overexpression of
GST-Bni4V-A/F-A (our unpublished data).
Similar rings were observed with a Cdc12-GFP strain (our unpublished
data), suggesting that the small rings may contain the normal
septin complement. However, the small rings do not colocalize with
Calcofluor staining (our unpublished data), and neither Bni4-GFP
nor Chs4-GFP accumulates in these small rings in GST-Bni4 expressing
strains, indicating that these structures do not recapitulate the
septin-associated complexes that normally assemble at the mother-bud
neck.
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Bni4 Is Required for Localization of Chs4 to Site of Bud Emergence but Not to Bud Neck at Cytokinesis
To determine whether the Bni4/Glc7 complex is required for
localized chitin deposition, we examined bud scars and GFP-Chs4 accumulation in bni4V-A/F-A mutants.
Calcofluor staining revealed a pattern of bud scars on
bni4V-A/F-A mutant cells that closely
resembled that observed on bni4::TRP1 cells
(Figure 4A). These scars are enlarged,
irregularly shaped, and dimmer than scars in BNI4 cells. To
assess the timing of chitin deposition in bni4 mutants, we
assayed chitin levels at the site of bud emergence. A septin-GFP fusion
(Cdc10-GFP) was used to unequivocally identify the bud site. As shown
in Figure 4B (1, 2, and 3, arrowheads), chitin is deposited at the neck
in small-budded cells in the wild-type strain. In contrast, only low
levels of calcofluor fluorescence were observed at the bud neck in the
bni4::TRP1 (our unpublished data) and
bni4V-A/F-A mutants (Figure 4B, 4-9).
High levels of chitin were only observed in some
bni4::TRP1 and
bni4V-A/F-A cells late in the cell cycle,
when the septin collar has separated into two rings (Figure 4B, 6,
arrow). These results suggest that Bni4-Glc7 is required for chitin
deposition early in the cell cycle.
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DeMarini et al. (1997)
noted in fixed samples that the
localization of GFP-Chs4 to the incipient bud was Bni4 dependent. To characterize Chs4 localization further, we imaged live cells that contained Chs4 fused to bright variant of GFP (GFPF64L
S65T) (Cormack et al., 1996
). This fusion
complemented a chs4 null mutation when expressed from a
low-copy plasmid. GFP-Chs4 was found at the highest level at the cortex
in some unbudded cells, in small-budded cells, but not in medium-budded
cells. Surprisingly, it was also found at high concentrations at the
necks of some large-budded cells. Time-lapse imaging of this fusion
(Figure 5A and attached video) revealed
that GFP-Chs4 mobilizes to the site of bud emergence before bud
formation (Figure 5A, 0 min, top arrow), remains at the bud neck in
small-budded cells, but then rapidly disappears from the neck. At the
end of the cell cycle, GFP-Chs4 again accumulates at the neck at
concentrations as high or higher than those found in small-budded cells
(Figure 5A, 100 min, arrowhead).
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GFP-Chs4 does not accumulate at the site of bud emergence in bni4::TRP1 (our unpublished data) and bni4V-A/F-A (Figure 5B and attached video) mutant cells but it does accumulate at the neck during cytokinesis (Figure 5B, 0 and 46 min, arrowheads). Thus, like Glc7, Chs4 requires Bni4 to accumulate at the bud neck early in the cell cycle but not at cytokinesis. We also performed time-lapse experiments on cells expressing Bni4-GFP (Figure 5C and attached video). The experiments revealed that Bni4-GFP first accumulates at the site of bud emergence before bud formation, similarly to GFP-Chs4 (15 min, arrow). In contrast to GFP-Chs4, Bni4-GFP is retained on the mother side of the bud at relatively high levels for a much longer period (100 and 175 min, arrowheads) and then mobilizes to both sides of the neck, but at a concentration of only ~40% of that found earlier in the cell cycle (175 min, arrow). The drop of Bni4 levels at the bud neck is not simply due to a reduction in the total Bni4 concentration, because levels of Bni4 do not change significantly through the cell cycle, as judged by immunoblot analysis (see below).
To compare the dynamics of Bni4 and Chs4, we measured GFP fluorescence at the incipient bud site and at the bud neck in strains containing either Bni4-GFP or GFP-Chs4 and plotted the fluorescence values as a function of the progress through the cell cycle. As shown in Figure 5D, high levels of Bni4-GFP are retained at the neck for 60-80% of the cell cycle, whereas GFP-Chs4 is retained at the neck for roughly 30% of the cell cycle. The average time that Bni4-GFP remained at the bud neck was 145 ± 28 min (n = 14), whereas GFP-Chs4 remained at the neck for 40 ± 8 min (n = 3). GFP-Chs4 levels spike again at cytokinesis, whereas Bni4-GFP levels continue to fall at this stage.
Bni4V-A/F-A Fails to Associate Properly with Bud Neck
The null phenotype of the bni4V-A/F-A
mutant (Figure 4A) suggests that Glc7 may have a critical role in
recruiting chitin synthase to the bud neck. To investigate the role of
Glc7 in this process, we assayed the location of wild-type Bni4 and
Bni4V-A/F-A in fixed cells by indirect
immunofluorescence, and directly in live cells by using GFP fusions to
Bni4 and the Bni4V-A/F-A variant. Indirect
immunofluorescence microscopy by using anti-Bni4 antibodies revealed
that the level of Bni4V-A/F-A at the bud neck was
reduced relative to that of wild-type Bni4 (Figure
6A). Only 10% (n = 150) of budded
cells from a bni4V-A/F-A strain exhibited
staining at the bud neck compared with 39% (n = 145) of budded
cells from a wild-type strain. Immunoblot analysis of cell
extracts prepared from BNI4 and
bni4V-A/F-A strains showed that Bni4 and
Bni4V-A/F-A were expressed at similar levels
(Figure 6B). We also compared the location of Bni4-GFP and
Bni4V-A/F-A-GFP fusions. The
Bni4V-A/F-A-GFP fusion was only weakly localized
to the bud neck (Figure 6C). We quantified the concentration of
Bni4-GFP and Bni4V-A/F-A-GFP fusions at the bud
neck. Before bud emergence and in small-budded cells, the levels of
Bni4V-A/F-A-GFP at the site of bud emergence were
only ~40% of that observed for wild-type Bni4. However, in
large-budded cells the concentrations of Bni4-GFP and
Bni4V-A/F-A-GFP at the neck were similar (Figure
9B).
|
If the failure of Bni4V-A/F-A to associate
properly with the neck is due to a failure to bind Glc7 then Glc7
mutants that are defective in Bni4 binding should also prevent Bni4
accumulation at the bud neck. A GFP fusion to the Glc7-129 variant
fails to associate normally with the bud neck (Bloecher and Tatchell,
2000
). We demonstrated by two-hybrid analysis (Figure
7A) and in coimmunoprecipitation experiments (our unpublished data) that Glc7-129 fails to
interact properly with Bni4. Bni4-GFP levels were reduced in the
glc7-129 mutant by at least 50% below that of the wild type
(Figure 7, B and C), consistent with the hypothesis that a Bni4-Glc7
complex is required for efficient association of either of the proteins with the septin neck filaments.
|
Bni4 Is Phosphorylated in a Cell Cycle-dependent Manner
Walsh et al. (2002)
found that Bni4 migrates as two
closely spaced bands on SDS-PAGE gels. We observed that the
electrophoretic mobility of Bni4V-A/F-A was
slower than that of wild-type Bni4 (Figure 6B) and that
Bni4V-A/F-A often migrated as multiple bands. To
determine whether the heterogeneity in electrophoretic mobility of Bni4
is due to phosphorylation, we treated immunoprecipitates of Bni4 with
alkaline phosphatase before PAGE. Dephosphorylation caused the broad
band of Bni4 cross-reacting material to migrate as a single band with a
faster electrophoretic mobility (Figure
8A). Bni4V-A/F-A
migrated as a single band with the same mobility as wild-type Bni4
after treatment with alkaline phosphatase (Figure 8A). These results
suggest that Bni4 is phosphorylated and indicate that Bni4V-A/F-A is likely hyperphosphorylated.
|
As a first step in determining whether phosphorylation is responsible
for the cell cycle-dependent localization of Bni4, we synchronized
cells in G1 by depriving cells of G1 cyclins by using strain DLY222
(Bose et al., 2001
), in which the sole G1 cyclin (Cln3) is
under GAL1 control. Cells were arrested in G1 by incubation in medium containing sucrose and then transferred into medium containing galactose as the sole carbon source. Aliquots of the culture
were harvested at 15-min intervals after galactose induction and
assayed for cell budding, nuclear division, and Bni4 electrophoretic mobility (Figure 8B). Before galactose induction, Bni4 in the Cln3-deprived cells was in the high-mobility form, but within 15 min
after Cln3 induction slower migrating forms of Bni4 were visualized.
These forms predominated just before cell budding (30 min). At 60 min,
forms of intermediate mobility were present and predominated at 90 min
when nuclear division began. The electrophoretic mobility of Bni4 from
cells at the 30- and 45-min time points was similar to that of
Bni4V-A/F-A from an asynchronous culture (Figure
8, B and C). We also synchronized MATa haploid
cells with the mating pheromone alpha factor and observed a similar
pattern of mobility changes in Bni4 after release from alpha factor
arrest (our unpublished data). Together, these results indicate
that Bni4 is most likely phosphorylated at multiple sites in a cell
cycle-dependent manner.
Hsl1 Kinase Regulates Association of Bni4 with Bud Neck
The cell cycle dependence of Bni4 phosphorylation and the apparent
hyperphosphorylated state of Bni4V-A/F-A suggest
that phosphorylation may play a key role in the localization and/or
function of Bni4. If this is the case, we would expect that reduced
activity of the kinase or kinases that phosphorylate Bni4 would result
in an alteration in the association of Bni4 with the neck. With this
rationale, we determined whether null mutations in any of several
protein kinase genes raise the level of Bni4-GFP at the bud neck. We
tested three kinases that are known to reside at the bud neck: Gin4,
Hsl1, and Kcc4. Gin4 has a well-documented role in regulating septin
morphology (Barral et al., 1999
; Longtine et al.,
2000
). Hsl1 has a role in regulating the stability of Swe1, an
inhibitory kinase of Cdc28 (Barral et al., 1999
; McMillan
et al., 1999
; Shulewitz et al., 1999
; Longtine et al., 2000
; Cid et al., 2001
). Kcc4 is most
similar to Hsl1 and was reported to have a partially redundant function
with Gin4 and Hsl1 in some genetic backgrounds (Barral et
al., 1999
). We introduced the Bni4 and
Bni4V-A/F-A-GFP fusions into gin4,
hsl1 and kcc4 null mutants and assayed the levels
of GFP fluorescence at the bud neck. By visual inspection of
fluorescence images, no clear effect was found for gin4 and kcc4 null mutations, but Bni4-GFP levels at the bud neck
were elevated in hsl1 null mutants (Figure
9A). Quantitation of fluorescence levels
revealed a small increase in Bni4V-A/F-A-GFP and
a greater increase of the wild-type Bni4-GFP levels in the
hsl1 null mutant (Figure 9B). The increased fluorescence was observed both early in the cell cycle, when Bni4 levels at the bud neck
are highest, and late in the cell cycle, when Bni4 levels are reduced.
Immunoblot analysis revealed no obvious difference in the
total level of Bni4-GFP accumulation in hsl1 null and
HSL1 strains, and no differences in the phosphorylation
state of Bni4-GFP, as assayed by the electrophoretic mobility of
Bni4-GFP (Figure 9C).
|
Although loss of Hsl1 resulted in a significant increase in the level of Bni4 at the bud neck, it had a greatly reduced effect on Bni4V-A/F-A localization. This result would be expected if Hsl1 acted on Bni4-Glc7 to negatively regulate binding to the septin ring, possibly by modulating the Glc7-Bni4 interaction. Consistent with this interpretation, Bni4-GFP levels at the neck in small-budded cells were low and nearly identical in glc7-129 and glc7-129 hsl1-1 mutants (our unpublished data). These results indicate that Hsl1 affects the localization of Bni4, possibly by reducing the Bni4-Glc7 interaction.
| |
DISCUSSION |
|---|
|
|
|---|
The work presented herein and elsewhere provides a strong case that Bni4 acts as a targeting subunit for PP1c in yeast. Bni4 associates with Glc7 in two-hybrid, pull-down, and FRET assays, and contains a PP1-binding motif that is necessary for the interaction with Glc7. Glc7 is not targeted to the bud neck in bni4 null mutants, whereas enhanced expression of BNI4 results in increased Glc7 levels at the bud neck. The evolutionary importance of PP1 binding for Bni4 function is strengthened by the fact that the gene product in Candida albicans (open reading frame 6.28353) most closely related to Bni4 is most similar in the Glc7/PP1 binding domain. Although the overall sequence identity is low, the COOH terminal 63 amino acid residues of the Saccharomyces cerevisiae and C. albicans proteins are 73% identical.
Although it is clear that Bni4 targets Glc7 to the bud neck, the role
of the phosphatase at this location remains obscure. Many PP1c
targeting subunits bind to specific substrates to tether substrate and
phosphatase directly. Given the role of Bni4 in targeting chitin
synthase III to the bud neck via association with the septin ring,
candidate substrates include Chs4, Chs3, or possibly septins. However,
we have no evidence to date that any of these proteins are PP1
substrates. We have not observed 32P
incorporation into GFP-Chs4 in vivo (Panek, unpublished observations). Although the negative evidence does not eliminate the possibility that
Bni4-Glc7 may dephosphorylate Chs4, septins, or other as yet
unidentified binding partners, the data presented herein suggest that
Bni4 itself may be a substrate for Glc7. Bni4 is phosphorylated in vivo
and Bni4V-A/F-A, which fails to associate with
Glc7, is apparently hyperphosphorylated. This situation parallels that
of Gac1, a glycogen targeting subunit for Glc7, which is also a
phosphoprotein that is hyperphosphorylated in a strain bearing a Glc7
variant that does not bind to Gac1 (Stuart et al., 1994
).
The failure of Bni4V-A/F-A to associate properly
with the bud neck suggests that Glc7 facilitates association of Bni4
with septins. This could occur because Glc7 is required enzymatically,
or alternatively, a Bni4-Glc7 complex might be the molecular entity
that associates with the septin ring. We think it is unlikely that the
two missense mutations in Bni4V-A/F-A result in a
direct defect in septin binding because the Cdc10-binding domain,
defined by two-hybrid analysis (DeMarini et al., 1997
), does
not include the COOH-terminal region required for Glc7 binding. Furthermore, levels of Bni4V-A/F-A at the bud
neck are elevated in an hsl1 null background, suggesting that Bni4V-A/F-A does not have an inherent defect
in septin binding.
The low level of Bni4V-A/F-A at the bud neck suggests
to us that Glc7 and Bni4 are interdependent for association with the
septin ring before bud emergence. Bni4 is the second Glc7-binding
protein to share an interdependent role with Glc7 for septin-dependent localization. Gip1, together with Glc7, associates with septins that
underlie the prospore membranes during sporulation (Tachikawa et
al., 2001
). In this case, there is interdependence between septins
and Gip1-Glc7 for the normal development of the prospore wall. In the
absence of Gip1, or in strains bearing glc7-136, a
GLC7 allele whose product fails to associate with Gip1,
septin filaments are not properly assembled and the prospore wall does not properly form. In contrast, loss of Bni4 does not seem to affect
mitotic septin structure. However, we cannot rule out subtle effects,
and the overexpression of GST-Bni4 results in formation of aberrant
septin structures.
Bni4-GFP levels at the bud neck are reduced more than twofold in
glc7-129 small-budded cells, consistent with the hypothesis that Glc7 is required for Bni4 localization. However, bud scars are
normal in the glc7-129 mutant (Bloecher and Tatchell, 2000
) and Chs4-GFP mobilization to the incipient bud site still occurs in
this mutant (our unpublished data). We don't know the reason for the lack of reciprocity in this case. It is possible that the
alanine substitutions in Bni4V-A/F-A mutant
protein affect some property of the protein in addition to binding
Glc7. Alternatively, the results could be explained by the existence of
a redundant phosphatase that can substitute for Glc7. Such a
phosphatase would dephosphorylate critical residues on Bni4 in the
glc7-129 strain, but would fail to interact with Bni4V-A/F-A. We have noted that two phosphatase
genes whose products are closely related to Glc7, PPZ1, and
PPZ2, exhibit complex genetic interactions with
GLC7 (Venturi et al., 2000
). Particularly
relevant to this case is the observation that glc7-129
mutants are inviable in the absence of PPZ1 and
PPZ2, suggesting that there is some overlap in specificity.
Ppz1 is capable of associating with a number of Glc7-binding proteins,
but we have not yet tested for an association between Ppz1 and Bni4.
Another possibility is that Glc7-129 could exhibit reduced Bni4-binding
in vivo but still bind to the extent necessary to recruit Chs4.
Based on indirect immunofluorescence studies of Bni4 (DeMarini et
al., 1997
) and time-lapse imaging of Bni4-GFP, Bni4 undergoes dynamic changes in its localization. It appears at the presumptive bud
emergence site ~15 min. before budding and subsequently forms a ring
on the mother side of the mother-bud neck. Later in the cell cycle,
Bni4 forms rings on both sides of the neck, but at a lower
concentration than earlier. These dynamic changes in Bni4 localization
correlate well with changes in phosphorylation, as assayed by
phosphatase-dependent changes in electrophoretic mobility. Assuming
that the different migrating forms of Bni4 reflect different states of
phosphorylation, Bni4 undergoes complex changes in its state of
phosphorylation. In G1, Bni4 migrates rapidly on SDS-PAGE, similar to
the migration of dephosphorylated Bni4. Fifteen minutes before budding,
Bni4 migrates more slowly on SDS-PAGE, correlating with the first
appearance of Bni4 at the site of bud emergence. Later in the cell
cycle, when nuclear division begins, much of the Bni4 protein migrates
as a band of intermediate mobility, correlating with the time when the
levels of Bni4 drop at the bud neck. These findings suggest that
phosphorylation may play a role in the localization of Bni4, but we
cannot at this time exclude the possibility that the changes in the
phosphorylation state are a consequence of its dynamic localization. We
note that Bni4V-A/F-A, which fails to localize
properly to the bud neck, migrates similar to Bni4 from late G1/S, when
it accumulates to high levels at the neck. This may appear as
contradictory but it allows us to point out that we do not know
precisely how the electrophoretic mobility of Bni4 correlates with its
phosphorylation state. Nevertheless, these results indicate that Bni4
undergoes complex changes in its phosphorylation state that may be
responsible for its dynamic changes in location throughout the cell
cycle or for its ability to act as a scaffold for Chs4.
We found that deletion of the HSL1 gene (hsl1-1)
could significantly elevate levels of wild-type Bni4 at the bud
neck but it had a much smaller influence on the levels of
Bni4V-A/F-A. The hsl1-1 mutation also
had little influence on Bni4 levels in a glc7-129 mutant.
These data suggest that Hsl1 acts by modulating the formation of the
Glc7-Bni4 complex. We have no evidence that Hsl1 alters the
phosphorylation state of Bni4, although our electrophoretic mobility
assay for Bni4 phosphorylation could easily miss a subtle change. Hsl1
could also act directly on Glc7 at the bud neck, but there is no
evidence that Glc7 is phosphorylated (Stuart et al., 1994
).
In contrast to Bni4, Hsl1 appears at the bud neck after bud emergence
and is found on the daughter side of the neck (Barral et
al., 1999
; Shulewitz et al., 1999
; Longtine et
al., 2000
). The differences in location of the two suggest that
the effect of hsl1 may be indirect. Hsl1 together with its
binding partner Hsl7 are required for the inhibition of Swe1 by
degradation (McMillan et al., 1999
; Shulewitz et
al., 1999
). Whether the effect we see in hsl1 null
mutants on Bni4 localization is directly due to the loss of Hsl1 or
Hsl7 or due to downstream changes in Clb-Cdc28 activity will require
further investigation.
Bni4 likely has roles in addition to that required for normal chitin
deposition. Crh2, a glycosylphosphatidylinositol-anchored protein involved in cell wall assembly (Rodriguez-Pena et
al., 2000
), requires Bni4 for normal localization in large-budded
cells (Rodriguez-Pena et al., 2002
). This role in targeting
Chr2 could explain why Bni4 is retained at the bud neck late in the
cell cycle, when Chs4 has disappeared from the neck. Genetic evidence also supports multiple roles for Bni4. bni4
chs4
and
bni4
chs3
double mutants grow more slowly than either
chs4
or chs3
mutants. This slow-growth
phenotype indicates loss of an additional function of BNI4
that further compromises the growth of strains lacking chitin synthase
III. There is a precedent for functional redundancy between different
cell wall components. Mutations in FKS1, encoding
-glucan
synthase, and ANP1, a component of a Golgi glycosylation complex, are lethal in combination with chs3 null mutations
(Osmond et al., 1999
). Furthermore, an fks1 null
mutant exhibits a compensatory increase in chitin synthase III activity
(Garcia-Rodriguez et al., 2000
). Together, these results
suggest that Bni4 could target multiple cell wall biosynthetic enzymes
to the bud neck.
Chs4 associates with the bud neck for a short time at bud emergence and
then again late in the cell cycle by a Bni4-independent mechanism. The
reappearance of Chs4 at the bud neck late in the cell cycle supports
the hypothesis that chitin synthase III activity provides the auxiliary
septum that forms in the absence of chitin synthase II (Schmidt
et al., 2002
). We do not know why Chs4 disappears from the
bud neck sooner than Bni4. One possibility is that Bni4 is
posttranslationally modified after bud emergence in a manner that would
allow disassociation of Chs4. The cell cycle-specific changes in the
phosphorylation state of Bni4 would accommodate such a model.
Alternatively, Chs3 endocytosis may facilitate Chs4 removal. DeMarini
et al. (1997)
found that GFP-Chs4 localization to the neck
was dependent upon Chs3. We don't know whether mobilization of Chs4 to
the neck at cytokinesis uses a Bni4-like mechanism, but no obvious
Bni4-homolog has been identified in the S. cerevisiae genome. At cytokinesis, septins form rings on both sides of the neck
but judging from the time-lapse images presented in Figure 5, GFP-Chs4
accumulates as a single ring only on the mother side of the neck or
directly at the actomyosin ring. Interestingly, the localization of
Glc7 to the neck at this stage is also independent of Bni4. Whether
Chs4 is regulated at cytokinesis by another Glc7-targeting subunit or
independently of Glc7 will require further investigation.
| |
ACKNOWLEDGMENTS |
|---|
We thank Danny Lew, Philip James, Neal Mathias, and Nathan Davis for reagents necessary to carry out this work. We also thank Lucy Robinson for reading the manuscript. This work was supported by the National Institutes of Health grant GM-47789.
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FOOTNOTES |
|---|
Online version of this article contains video material for
some figures. Online version available at
www.molbiolcell.org.
* These authors contributed equally to this work.
Present addresses:
Department of Biochemistry, 140 Farber
Hall, SUNY, Buffalo, NY 14214;
Division of Basic Science
Fred Hutchinson Cancer Research Center, 1100 Fairfiew Ave, North,
Seattle, WA 98105; and
§GlaxoSmithKline, 709 Swedeland
Rd., P.O. Box 1539, King of Prussia, PA 19406.
Corresponding author. E-mail address:
ktatch{at}lsuhsc.edu.
Article published online ahead of print. Mol. Biol. Cell 10.1091/mbc.E02-06-0373. Article and publication date are at www.molbiolcell.org/cgi/doi/10.1091/mbc.E02-06-0373.
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REFERENCES |
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