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Vol. 14, Issue 5, 2104-2115, May 2003
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-depending Nuclear Import Pathways: Role of the Adapter Proteins in the Docking and Releasing Steps




* Department of Zoology, University of British Columbia, Vancouver, British
Columbia, V6T 1Z4 Canada;
Swiss Federal Institute of Technology Zurich, Institute of Biochemistry,
Hönggerberg, CH-8093 Zurich, Switzerland
Submitted June 29, 2002;
Revised November 22, 2002;
Accepted January 16, 2003
Monitoring Editor: Pamela Silver
| ABSTRACT |
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. However, due to the presence of different import
signals, the adapter protein of the imported molecules and importin
is
different for each pathway. Although the adapter for cNLS-protein is importin
, the adapter for U1 snRNP is snurportin1 (SPN1). Herein, we show that
the use of distinct adapters by importin
results in differences at the
docking and releasing step for these two import pathways. Nuclear pore complex
(NPC) docking of U1 snRNP but not of cNLS-protein was inhibited by an
anti-CAN/Nup214 antibody. Thus, the initial NPC-binding site is different for
each pathway. Pull-down assays between immobilized SPN1 and two truncated
forms of importin
documented that SPN1 and importin
have
different binding sites on importin
. Importin
fragment
1618, which binds to SPN1 but not to importin
, was able to
support the nuclear import of U1 snRNPs. After the translocation through the
NPC, both import complexes associated with the nuclear side of the NPC.
However, we found that the nature of the importin
-binding domain of the
adapters influences the release of the cargo into the nucleoplasm. | INTRODUCTION |
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and
importin
. Importin
harbors an importin
-binding (IBB)
domain at its N terminus and acts as an adapter between the cNLS-bearing
protein (cNLS-protein) and importin
. Many other (but not all) nuclear
transport pathways are mediated by transport receptors that are members of a
large importin
-related protein family (reviewed by
Görlich and Kutay, 1999
At the molecular level, nuclear import is a sequential process that starts
with the interaction between the targeting signal and soluble cellular
receptors. After targeting to the NPC, the cargoreceptor complex
crosses the NPC, and the cargo is released into the nucleus. Sequential
interactions between the cargoreceptor complex and nucleoporins are
thought to be the driving force behind the translocation of the
cargoreceptor complex through the NPC
(Radu et al., 1995
;
Rexach and Blobel, 1995
).
Although there have been several studies documenting in vitro interactions
between import receptors and nucleoporins (reviewed by
Ryan and Wente 2000
), in vivo
interactions between the cargoreceptor complex and NPC components are
still not well characterized. Nevertheless, by microinjecting gold-labeled
nucleoplasmin into the cytoplasm of Xenopus oocytes and following its
nuclear import by electron microscopy (EM), it has been possible to depict in
vivo interactions between the cargoreceptor complex and the NPC. For
example, three different conditions that yield docking of the
cNLScargoreceptor complex to the nuclear envelope by
immunofluorescent microscopy yielded three distinct NPC-arrested intermediates
by EM. Gold-labeled nucleoplasmin is arrested: 1) at the terminal end of the
cytoplasmic filaments when import is inhibited by wheat germ agglutinin (WGA)
(Panté and Aebi, 1996
);
2) at the cytoplasmic entrance of the central channel when import is inhibited
by low temperature (Panté and Aebi,
1996
); and 3) at the nuclear basket when import is followed in the
presence of a mutant form of importin
that does not bind Ran
(Görlich et al.,
1996
). By using this methodology, it will also be possible to
follow the path of other transport cargo molecules through a single NPC.
Importin
also mediates the nuclear import of spliceosomal
uridin-rich small nuclear ribonucleoprotein particles (U snRNPs;
Palacios et al.,
1997
). However, the signal for U1 snRNP nuclear import is not a
cNLS. The U1 snRNP nuclear import signal is bipartite, and it is formed by the
m3G-cap and the Sm core domain of the Sm proteins
(Fischer and Lührmann,
1990
; Hamm et al.,
1990
; Fischer et al.,
1991
,
1993
). Both components of the
signal are formed after the assembly of the U snRNPs in the cytoplasm. As a
consequence, only fully assembled U1 snRNPs enter the nucleus. The
m3G-cap is specifically recognized by the import receptor
snurportin1 (SPN1) that functions as an adapter between the
m3G-cargo and importin
(Huber et al., 1998
).
An additional but different receptor seems to interact with the second part of
the signal required for nuclear import of U1 snRNPs. However, the identity of
this receptor and the molecular nature of the second signal remain to be
elucidated.
Despite the fact that the U1 snRNP and the cNLS-protein import pathways use
both importin
as an import receptor, there are some differences between
these pathways, which indicates that they are driven by different molecular
mechanisms. These differences are as follows: 1) the apparent absence of
docking of U snRNPs at the NPC under conditions that yield the accumulation of
cNLS-proteins at the NPC (Palacios et
al., 1996
); 2) in contrast to the nuclear import of
cNLS-proteins, the nuclear import of U snRNP is independent of Ran
(Marshallsay et al.,
1996
; Huber et al.,
2002
); and 3) the limited inhibitory effect of WGA on the nuclear
import of U snRNPs under conditions that completely inhibit the import of
cNLS-proteins (Fischer et al.,
1991
; Michaud and Goldfarb,
1992
; Marshallsay and
Lührmann 1994
). Because WGA binds to a group of
10
nucleoporins that are modified with O-linked
N-acetylglucosamine, the latter difference indicates that different
nucleoporins are involved in these two nuclear import pathways.
Both importin
and SPN1 contain an IBB domain for importin
binding, located at the N-terminal end of both proteins. The amino acid
sequences of importin
and SPN1 are otherwise unrelated. The IBB of
importin
binds to the 3/4 C-terminal region of importin
(a
region comprising residues 256876;
Kutay et al., 1997b
;
Cingolani et al.,
1999
). The region of importin
that binds to the IBB of SPN1
has not yet been mapped. Despite having a similar role as adapters, there are
differences between importin
and SPN1. Some of these differences are
as follows: 1) the C-terminal m3G-capbinding region of SPN1
has no structural similarity to the C-terminal region of importin
(Huber et al., 1998
);
2) the affinity of SPN1 for importin
is different than the affinity of
importin
for importin
(Huber et al., 1998
);
and 3) although the nuclear export of importin
is mediated by the
export receptor CAS (Kutay et
al., 1997a
), the nuclear export of SPN1 is mediated by CRM1
(Paraskeva et al.,
1999
). The differences between the molecular mechanism for nuclear
import of U snRNPs and cNLS-proteins might be a consequence of the differences
between importin
and SPN1.
To determine the molecular basis of the differences between these two import pathways, herein we have studied nuclear import of U1 snRNP and we have compared our results with those of nuclear import of cNLS-proteins. Our data indicate that the adapter proteins for these two nuclear import pathways are involved in the NPC-docking and -releasing steps.
| MATERIALS AND METHODS |
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5' U1 snRNP, and the recombinant proteins SPN1 and
-galactosidase molecules fused to the IBB domains of SPN1 (IBBspn1) or
importin
(IBB
) were kindly provided by Drs. Reinhard
Lührmann, Jochen Huber, and Achim Dickmanns (Max-Planck-Institut fuer
Biophysikalische Chemie, Goettingen, Germany). Bovine serum albumin (BSA)
coupled to the peptide CGGGPKKKRKVED (a cNLS) was kindly provided by Dr. Achim
Dickmanns. The antibody QE5 was kindly provided by Dr. Brian Burke (Department
of Anatomy and Cell Biology, University of Florida, Gainesville, FL). The
anti-CRM1 antibody was a kind gift of Dr. Iain Mattaj (European Molecular
Biology Laboratory, Heidelberg, Germany).
Recombinant Protein Expression
The clone for full-length SPN1 tagged to two immunoglobulinbinding domains
of Staphylococcus aureus protein A (zz-tagged SPN1) was kindly
provided by Dr. Dirk Görlich (University of Heidelberg, Germany).
Zz-tagged SPN1 was expressed as described in Paraskeva et al.
(1999
). The three different
importin
constructs (1876, 1618, and 1452) and the
zz-tagged importin
were expressed as described in Kutay et
al. (1997b
).
Pull-Down Assays with Biotinylated Proteins
Importin
and SPN1 were biotinylated by incubation for 1 h on ice
with stoichiometric amounts of PEO-biotin (Pierce Chemical, Rockford, IL). To
remove unincorporated PEO-biotin, reaction mixtures were passed over NAP5
columns (Amersham Pharmacia, Freiburg, Germany) preequilibrated with 50 mM
Tris, pH 7.6, 200 mM NaCl, and 4 mM MgCl2. For each binding
reaction, 10 µl of streptavidin-agarose beads was presaturated with
biotinylated importin
or SPN1 for 1 h at 4°C. The beads were then
washed three times with B-buffer (50 mM Tris, pH 7.6, 150 mM potassium
acetate, and 4 mM MgCl2). Bound proteins were incubated for 1 h at
4°C in B-buffer supplemented with recombinant importin
to allow
complex formation between importin
and importin
or SPN1 and
importin
, respectively. After three times washing with B-buffer, the
beads were incubated in B-buffer supplemented with 50 µl of
Xenopus egg extract in a total volume of 500 µlfor4hat4°C. The
beads were then washed extensively with B-buffer and bound proteins were
eluted in 30 µl of SDS sample buffer and analyzed by SDS-PAGE and Western
blotting.
Pull-Down Assays with zz-tagged Proteins
Recombinant zz-tagged importin
or SPN1 were prebound to
IgG-Sepharose beads for 45 min at 4°C. The beads were washed several times
with a buffer containing 50 mM Tris, pH 7.5, 500 mM NaCl, and 5 mM
MgCl2. Then 250 µl of lysate of Escherichia coli
expressing importin
fragments was incubated each with 20 µl of
affinity matrix overnight at 4°Cina final volume of 1.5 ml of binding
buffer (50 mM HEPES-KOH, pH 7.5, 225 mM NaCl, 2 mM MgCl2, and
0.005% digitonin). The beads were then washed three times with binding buffer.
Bound proteins were eluted from the beads with 100 µl of MgCl2
buffer (1.5 M MgCl2, 50 mM Tris, pH 7.5), and eluted proteins were
precipitated with 1 ml of 100% isopropanol. The precipitated proteins were
dissolved in SDS sample buffer and analyzed by 8% SDS-PAGE.
Gold Conjugation of U1 snRNP, Proteins, and Import Complexes
Colloidal gold particles (6 and 8 nm) were prepared by reduction of
tetrachloroauric acid with sodium citrate in the presence of tannic acid
(Slot and Geuze, 1985
). U1
snRNP, BSA coupled with a cNLS (cNLS-BSA), SPN1, IBBspn1, and IBB
were
directly conjugated to the colloidal gold particles as described by Baschong
and Wrigley (1990
). After
conjugation, the complexes were centrifuged at 32,000 x g for
15 min. The soft pellet was taken for microinjection into Xenopus
oocytes.
Complexes between SPN1 and gold-labeled U1 snRNPs were formed by mixing
both solutions in a 1:1 M ratio followed by incubation of 20 min at room
temperature. The formation of complexes of importin
with IBBspn1 or
IBB
was performed by mixing gold-labeled IBBspn1 or gold-labeled
IBB
with a 1:1 M ratio of importin
, following by incubation at
room temperature for 20 min.
Microinjection of Xenopus Oocytes
Mature oocytes were removed from female Xenopus laevis as
described previously (Reichelt et
al., 1990
) and stored in modified Barth's saline (MBS)
containing 88 mM NaCl, 1 mM KCl, 0.82 mM MgSO4, 0.33 mM
Ca(NO3)2, 0.41 mM CaCl2, and 10 mM HEPES, pH
7.5. Oocytes were defolliculated by treatment with 5 mg/ml collagenase in
calcium-free MBS for 1 h. After intensive washing with MBS the oocytes were
used within the next 2 d for microinjection.
Xenopus oocytes were injected into their cytoplasm with 50100 nl of gold-conjugated molecules, and the injected oocytes were incubated in MBS at room temperature for the time indicated in the figure legends and prepared for EM as indicated below. The inhibition studies with the antibody QE5 were performed by cytoplasmic injecting QE5 at a 1:10 dilution. After incubation for 2 h at room temperature, gold-U1 snRNP, gold-cNLS-BSA, or gold-U1 snRNP-SPN1 was injected into the cytoplasm of different QE5-preinjected oocytes. After incubation for further 2 h, the oocytes were prepared for EM as indicated below.
Preparation of Oocytes for Electron Microscopy
After incubation of injected oocytes as indicated above, the oocytes were
fixed overnight at 4°C with 2% glutaraldehyde in MBS. The oocytes were
then washed three times with MBS, and the animal pole of the oocytes
(including the nucleus) was dissected and fixed again with 2% glutaraldehyde
in MBS for 30 min at room temperature. Then the dissected oocytes were washed
three times in MBS and embedded in 2% agar. After a postfixation with 1%
OsO4 in MBS for 1 h the samples were dehydrated and embedded in
Epon 812 (Fluka, Buchs, Switzerland) by standard procedures
(Jarnik and Aebi, 1991
).
Electron Microscopy Import Assay in HeLa Cells
SPN1 labeled with 8-nm gold particles was preincubated with a equimolar
amount of importin
fragment 1618 at room temperature for 20 min.
HeLa cells were grown as monolayers on thermanox plastic coverslips (Nalge
Nunc International, Naperville, IL) to 8090% confluence in DMEM
(Hyclone, Logan, UT) supplemented with 10% fetal calf serum and
penicillin/streptomycin at 37°C. Cells were permeabilized with 50 µg/ml
digitonin for 5 min at room temperature
(Adam et al., 1990
).
Coverslips with attached permeabilized cells were incubated for 30 min at room
temperature with transport buffer (40 mM HEPES-KOH, pH 7.5, 110 mM potassium
acetate, 4 mM magnesium acetate, 1 mM dithiothreitol, and 1:1000 of the
following protease inhibitor mix: 10 mg/ml chymostatin, 10 mg/ml leupeptin, 10
mg/ml antipain, and 10 mg/ml pepstatin in dimethyl sulfoxide;
Bastos et al., 1996
)
containing 25 µl of
1.3 µM SPN1-importin
(1618)
preformed complex, 0.2 mg/ml tRNA, and 4 mg/ml BSA. After incubation, the
coverslips were fixed with 2% glutaraldehyde in phosphate-buffered saline for
1 h at room temperature and postfixed for 1 h with 1% OsO4 in
phosphate-buffered saline at room temperature. Coverslips with fixed cells
were then sequentially dehydrated in 30, 70, and 90% ethanol each for 10 min;
followed by three times 100% ethanol (each for 10 min); and finally with 100%
acetone for 10 min. Coverslips were then infiltrated with mixtures of Epon 812
(Fluka) and acetone 1:1 for 2 h and 2:1 for 2 h, and finally in pure Epon 812
for 3 h. Gelatin capsules filled with fresh pure Epon resin were place on top
of coverslips (with the layer of cells facing the gelatin capsule) and
polymerized at 60°C for at least 24 h.
Electron Microscopy and Quantitation of Gold Labeling
Thin sections were cut on a Reichert Ultracut ultramicrotome by using a
diamond knife. Ultrathin sections were collected on phalloidin/carbon-coated
cooper grids, stained with 2% uranyl acetate for 30 min, and poststained with
2% lead citrate for 5 min. Micrographs were digitally recorded in an H-7000
transmission electron microscope (Hitachi, Tokyo, Japan) operated at an
acceleration voltage of 100 kV.
The position of gold particles associated with NPCs was determined from digital electron micrographs of cross sections along the nuclear envelope. Distances of gold particles were measured from the central plane of the NPC.
| RESULTS |
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The route that the goldU1 snRNP complexes took through the NPC is as
follows: first, they bound to the cytoplasmic filaments (gold particles
located at 3065 nm from the NPC central plane), and then to the
cytoplasmic entrance of the central channel (gold particles detected at
20 nm from the NPC central plane). Second, after the translocation
through the central channel, a process that is obviously too fast to be
detected in our embedded/thin-sectioned oocytes, the goldU1 snRNP
import complex interacted with the nuclear entrance/exit of the central
channel (gold particles at
20 nm from the NPC central plane). Finally,
the goldU1 snRNP import complex bound to the nuclear basket (gold
particles at
30120 nm from the NPC central plane). The release
from the nuclear basket into the nucleus and the subsequent movement away from
the NPC occurred very quickly, because gold particles inside the nucleus were
always found far away from the NPCs.
Nucleoporin CAN/Nup214 Is the First NPC Binding Site for the U1 snRNP
Import Pathway
To identify the nucleoporin(s) involved in the docking step of U1 snRNP to
the NPC, we used the antibody QE5 that has an epitope at the cytoplasmic
filaments corresponding to the nucleoporin CAN/Nup214
(Panté et al.,
1994
). To guarantee that CAN/Nup214 is completely blocked by the
antibody, QE5 was preinjected into the cytoplasm of the oocytes and the
oocytes were incubated at room temperature for 2 h. Next, gold-labeled U1
snRNP (or gold-cNLS-BSA) was injected into the oocytes. After further
incubation at room temperature, the oocytes were fixed, prepared for EM, and
gold distribution was determined in EM cross sections. We found that QE5
differentially blocked each import pathway. Whereas gold-U1 snRNP was found
throughout the cytoplasm and was not associated with the NPC of oocytes
preinjected with QE5 (Figure
2A), gold-cNLS-BSA was found associated with the distal part of
the NPC cytoplasmic filaments under the same conditions
(Figure 2B). However,
gold-cNLS-BSA remained at the cytoplasmic filament and did not associate with
the cytoplasmic entrance/exit of the central channel. Our explanation for this
result is that the antibody QE5, which also recognizes nucleoporin p62
(located near or at the cytoplasmic entrance/exit of the central channel;
Guan et al., 1995
),
had blocked this NPC-binding site.
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To demonstrate biochemically the different association between the two
cargoreceptor complexes with CAN/Nup214, we performed pull-down
experiments with immobilized adapters and proteins from a Xenopus egg
extract. For this purpose, biotinylated SPN1 and importin
were
immobilized on streptavidin-agarose beads, and the immobilized proteins were
bound to importin
. Then, the beads were incubated with Xenopus
egg extracts in the absence or presence of RanQ69L, a mutant of Ran, which is
insensitive to RanGAP, and which persists in the GTP bound state. As
documented in Figure 3, A and
B, when proteins from the egg extract that bound to the beads were
eluted and analyzed by immunoblots using the antibody mAb414 against several
nucleoporins, we found that nucleoporin CAN/Nup214 interacted with the
immobilized SPN1 only in the presence of RanQ69L. In contrast, CAN/Nup214 was
not present on the immunoblots when importin
was immobilized. The
Coomassie-stained gel (Figure
3A) shows that importin
was indeed dissociated from SPN1
(and from importin
) by RanQ69L. Thus, the interaction of gold-U1 snRNP
with CAN/Nup214 occurs when SPN1 is not loaded with importin
(in the
presence of Ran-GTP, SPN1 does not interact with importin
;
Paraskeva et al.,
1999
). As shown in Figure
3C, CRM1 (the export factor for SPN1) was present in the pull-down
experiments when SPN1 was immobilized, but not when importin
was
immobilized. The CRM1 band was more intense in the presence of RanQ69L
(Figure 3C, lane 4). This could
be explained by the interaction of CRM1 with CAN/Nup214, which is present in
the pull-down experiment in the presence of RanQ69L
(Figure 3B, lane 4).
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The U1 snRNP Import Pathway Has a Second NPC Binding Site at the
Cytoplasmic Filament
Our results with the QE5 antibody indicate that U1 snRNP binds its adapter
at CAN/Nup214. To test this implication, we performed EM import experiments
with the in vitroformed U1 snRNPSPN1 complex. This complex was formed
by mixing gold-labeled U1 snRNP with recombinant SPN1 at a 1:1 M ratio,
followed by incubation of the solution at room temperature for 20 min. We
first tested whether this complex was import competent by injecting them into
the cytoplasm of Xenopus oocytes and followed their fate by EM. We
found that at any given time of incubation there were more gold particles
targeted to the NPC, in transit through the NPC and imported into the nucleus
for the gold-U1 snRNP-SPN1 in vitro-formed complex than for gold-U1 snRNP
(Figure 4, A and B). These
results indicate that SPN1 accelerates the nuclear import of U1 snRNP by
enhancing the targeting of U1 snRNP to the NPC and by increasing the
interaction of the cargoreceptor complex with the NPC.
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We then performed EM import experiments with the gold-U1 snRNP-SPN1 in vitro-formed complex in oocytes that had been preinjected with the antibody QE5 (exactly as in the experiments performed with gold-U1 snRNP; Figure 2A). Surprisingly, we found that in contrast to gold-U1 snRNP (Figure 2A), the gold-U1 snRNP-SPN1 in vitroformed complex could still bind to the distal part of the cytoplasmic filaments in the presence of the QE5 antibody against the nucleoporin CAN/Nup214 (Figure 5A).
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Because the nuclear import of U1 snRNP is also mediated by a second import
signal located in the core domain of the Sm protein, this receptor and not
SPN1 might be involved in the interaction of the cargoreceptor complex
with the NPC. To test this hypothesis, we performed EM import experiments with
gold-
5' U1 snRNP, a mutant form that does not have the
m3G-cap. As shown in Figure
5C, 2 h after the cytoplasmic injection, gold-
5' U1
snRNP remained in the cytoplasm and did not interact with the NPC. This data
suggests a strong m3G-cap-dependent interaction of U1 snRNP with
CAN/Nup214, and demonstrates that the interaction of the cargoreceptor
complex with the NPC depends on the presence of SPN1 in the import
complex.
Together, our results with the QE5 antibody indicate that there are two binding sites for the U1 snRNP import complex at the cytoplasmic filaments: one at the nucleoporin CAN/Nup214 that involves the SPN1 export complex, and a second that requires the previous formation of the U1 snRNP import complex.
Importin
and SPN1 Bind to Different Regions of Importin

Next, we performed experiments to address the question of whether molecular
differences between SPN1 and importin
explain the differences between
the U1 snRNP and the cNLS import pathways. Our hypothesis was that SPN1 and
importin
have different binding sites on importin
that allow
different interactions of the cargoreceptor complex to distinct
nucleoporins. To test this hypothesis, pull-down assays between zz-tagged SPN1
and two truncated forms of importin
(1618 and 1452) were
performed, as it has been done for importin
(Kutay et al.,
1997b
). As a control, parallel experiments were done with the
full-length importin
(1876) and with zz-tagged importin
.
As expected and as described previously
(Kutay et al.,
1997b
), importin
1618 and importin
1452 did not bind to importin
(Figure 6, lanes 5 and 6).
Surprisingly, importin
1618 and importin
1452
bound to SPN1 (Figure 6, lanes
8 and 9). The two fragments, however, bound less efficiently than the
wild-type protein, and fragment 1452 bound less efficiently than
fragment 1618. These results indicate that the binding of importin
and SPN1 to importin
differs. Moreover, SPN1 and importin
cannot bind simultaneously to importin
(our unpublished
data).
|
Importin
Fragment 1618 That Does Not Bind to Importin
Is Able to Import SPN1
To obtain more insight on functional differences caused by molecular
differences between SPN1 and importin
, we tested whether importin
fragment 1618, which binds with high affinity to SPN1 but not to
importin
, is able to support the nuclear import of U1 snRNPs (as it
has been done with importin
fragments for the cNLS pathway;
Görlich et al.,
1996
; Kutay et al.,
1997b
). To avoid competition with endogenous importin
,
digitonin-permeabilized HeLa cells were used for these experiments instead of
Xenopus oocytes. Recombinant SPN1 labeled with colloidal gold was
used as import substrate. Gold-SPN1 was preincubated in vitro with recombinant
importin
1618, and this complex was tested in our EM import
assay in HeLa cells (see MATERIALS AND METHODS). Similarly to the nuclear
import of histone H1 by importin
1618
(Jäkel et al.,
1999
), we found that this fragment crossed the NPC and carried
SPN1 into the nucleus of permeabilized HeLa cells
(Figure 7A). However, compared
with control experiments using full-length importin
, the amount of
gold-SPN1 found in the nucleus was reduced to
40% for importin
1618. In contrast, when the experiment was done with gold-SPN1 alone,
the gold particles were not found in the nucleus of permeabilized HeLa cells
(Figure 7B). Consistent with
results from Huber et al.
(2002
), nuclear import of
gold-SPN1-importin
1618 occurred in the absence of energy and
Ran. The release of the gold-SPN1-importin
1618 complex from the
nuclear side of the NPC into the nucleoplasm and its subsequent movement into
the nucleus must have been very fast, because gold particles were found inside
the nucleus but away from the NPC.
|
The IBB Domain of Importin
and the IBB Domain of SPN1
Interact Differently with the NPC
To investigate whether the differences in the nuclear import of
cNLS-protein and U1 snRNPs is due to the IBB of the adapters, we performed
import experiments with
-galactosidase molecules fused to the IBB
domains of SPN1 (IBBspn1) or importin
(IBB
). Both IBBspn1 and
IBB
molecules were conjugated to colloidal gold, and the
IBBimportin
complexes were formed in vitro by incubating
gold-IBBspn1 or gold-IBB
with importin
at a 1:1 M ratio. These
complexes were then microinjected into the cytoplasm of Xenopus
oocytes, and their nuclear import was followed by EM. As documented in
Figure 8, A and B, gold
particles from both gold-IBBspn1 and gold-IBB
, were found associated
with both sides of the NPCs. Some gold particles were also found within the
nucleus, indicating that the nuclear import had taken place. Quantitative
analysis revealed that the distribution of gold particles associated with the
nuclear side of the NPC was significantly different for the two
gold-conjugated IBB molecules. As shown in
Figure 8, C and D, the amount
of gold particles accumulated at -30 nm was higher for IBB
than for
IBBspn1, and at -10 nm it was lower for IBB
than for IBBspn1. Thus, the
IBB
import complex remains associated to the nuclear basket for
longer time than the IBBspn1import complex.
|
| DISCUSSION |
|---|
|
|
|---|
.
Different Initial NPC Binding Sites for the U1 snRNP and the
cNLSProtein Import Complex
Because both U1 snRNP and cNLS-proteins use importin
, it is
considered that the interactions of the cargoreceptor complex with the
NPC are the same in both cases. However, we found by both EM and pull-down
assays that the nucleoporin CAN/Nup214 is involved in the U1 snRNP import
pathway but not in the cNLS import pathway. This is in agreement with the
recent finding by Walther et al.
(2002
) that this nucleoporin
is not involved in nuclear import of cNLS-protein. Thus, the U1 snRNP and the
cNLS import pathways have different initial NPC-binding sites at the
cytoplasmic filaments, even though they both use importin
.
A second binding site at the cytoplasmic filament different from CAN/Nup214 was also observed for the U1 snRNP import pathway. We found that whereas U1 snRNP did not bind to the NPC, the in vitro-formed U1 snRNPSPN1 complex bound to the NPC-cytoplasmic filaments in the presence of the anti-CAN/Nup214 antibody. From our data, we cannot distinguish whether this second cytoplasmic filament-binding site is the same as the first docking site for the cNLS import pathway (which is not inhibited by QE5).
The U1 snRNP Import Complex Is Formed at the Nucleoporin
CAN/Nup214
We found that the cytoplasmic preinjection of QE5 did not prevent the
interaction of the preformed U1 snRNPSPN1 complex with the NPC
cytoplasmic filaments. Similarly to the result with the cNLS-protein
(Figure 2B), the interaction of
the in vitro-formed U1 snRNPSPN1complex with the cytoplasmic side of
the central channel was inhibited (because QE5 recognizes p62). It seems that
if SPN1 is present in the import complex, it can skip the first binding site
at the nucleoporin CAN/Nup214. These results support the conclusions that U1
snRNP binds to CAN/Nup214 without forming an import complex with SPN1 in the
cytoplasm.
We were surprised to find two different binding sites at the cytoplasmic
filament for the U1 snRNP import pathway. These results raise the question of
why the U1 snRNP pathway requires two binding sites at the cytoplasmic
filaments, whereas the cNLS pathway requires only one. Our explanation for
this difference is that, most probably, the first binding of U1 snRNP to
CAN/Nup214 is mediated by its interaction with SPN1, which is already bound to
CAN/Nup214 via CRM1 when SPN1 is exported (i.e., the SPN1 export complex).
Thus, the first NPC interaction of U1 snRNP via CAN/Nup214 enables the U1
snRNP to interact with SPN1 and to form the U1 snRNP import complex directly
at the NPC. This is in contrast to the cNLS pathway where the
cargoreceptor complex is formed before the interaction with the NPC
(Görlich et al.,
1995
).
Importin
Is a Carrier That Can Interact with Cargo in Three
Different Modes
Two different importin
-binding domains for cargo have been
previously identified. The first one involves the 3/4 C-terminal region of
importin
(residues 256876;
Kutay et al., 1997b
;
Cingolani et al.,
1999
), which binds to the IBB domain of importin
. The
crystal structure of importin
bound to the IBB domain of importin
shows that when the two molecules interact, the IBB of importin
fits within the helical structure of the snail-shaped molecule of
importin
(Cingolani et al.,
1999
). Thus, the IBB is embedded within the structure of importin
. The second cargo-binding domain of importin
comprises residues
286462, which binds to the BIB (
-like import receptor binding)
domain of the ribosomal protein L23a
(Jäkel and Görlich,
1998
). This article reports a third mode of cargo-binding to
importin
. Although the N-terminal 618 residues of importin
are
able to bind to SPN1, the same importin
fragment does not interact with
importin
. This result was surprising because of the high degree of
homology between the IBB of SPN1 and the IBB of importin
(31%
identity, 62% similarity; Huber et
al., 1998
). Most probably, the IBB of SPN1 folds in a
conformation that cannot fit within the helical structure of importin
like the IBB of importin
does
(Cingolani et al.,
1999
). SPN1 binding to importin
also seems to be different
from the BIB binding, because transport receptors such as transportin,
importin 5 and importin 7, which greatly stimulate nuclear uptake of the BIB
domain of L23a, do not promote the efficient nuclear import of SPN1 (our
unpublished data).
The SPN1-binding domain on importin
might partially overlap with the
Ran-binding domain (residues 1342;
Kutay et al., 1997b
;
Vetter et al., 1999
).
Crystallographic studies have shown that the Ran-binding domain is a loop
within the importin
molecule, which corresponds to the small tail of
the snail-like molecule (Vetter et
al., 1999
). If the IBB of SPN1 fits into this loop, this
could explain that Ran is not required for the nuclear import of U1 snRNPs
(Huber et al., 2002
).
Alternatively, the binding of SPN1 to importin
might modify the
conformation of this loop in such a way that RanGTP cannot bind to importin
.
Importin
seems to be a highly flexible molecule that can adopt a
number of different conformations
(Cingolani et al.,
1999
; Vetter et al.,
1999
; Bayliss et al.,
2000
). The mode of interaction with the import cargo may force
importin
into different conformations, which, in turn, determine the
Ran requirement of the NPC passage. This leads to the assumption that importin
, when bound to different cargo, changes its way of interaction with the
NPC.
The Last Step of Nuclear Import at the NPC Depends on the Nature of
the Adapters
After the translocation through the central channel of the NPC, the
cNLSreceptor complex binds to the nuclear basket of the NPC. From this
last NPC-binding site the cargo receptor complex is then released into
the nucleus, a step that requires the binding of nuclear RanGTP to importin
(Görlich et al.,
1996
). For the U1 snRNP import pathway we have also observed
interaction of the cargoreceptor complex with the nuclear baskets.
Using complexes of importin
with the IBB domain of SPN1 or with the IBB
domain of importin
we found that the nature of the IBB domain of the
adapters influences the association of the gold-IBB with the nuclear basket.
There were more gold particles associated with the nuclear baskets for
gold-IBB
than for IBBspn1-gold. An interpretation of this result is
that the dissociation of the import cargo from the NPC and its delivery into
the nucleus is faster for the U1 snRNP import pathway than for the cNLS import
pathway. Alternatively, because different regions of importin
are
engaged in the binding with the different adapters, depending on whether SPN1
or importin
is bound to importin
, it will interact with
different nucleoporins at the release site. Our data support both
interpretations. However, because RanGTP is not required for SPN1-mediated
nuclear import (Huber et al.,
2002
), one can speculate that the different gold distribution at
the nuclear basket is because the IBBspn1 import complex does not have to wait
for nuclear RanGTP to bind to importin
. Thereby, IBBspn1-gold released
from the nuclear basket faster than gold-IBB
.
In summary, our structural analysis of the U1 snRNP import pathway is
consistent with a model in which the U1 snRNP binds to SPN1 in its export
complex at CAN/Nup214. The U1 snRNP-SPN1 import complex then incorporates
importin
to advance the translocation through the NPC. Similarly to the
cNLS import complex, after the translocation through the central channel, the
U1 snRNPreceptor complex binds to the nuclear basket. This interaction
might involve the binding of importin
to a region of Nup153 (or other
nucleoporins located at the nuclear baskets) that is different from the one
used by importin
when it is loaded with a cNLS-cargo. This importin
nucleoporin interaction might involve different regions of
importin
, depending on the import cargo. From this final NPC-binding
site, the import complex dissociates and the cargo is released into the
nucleus. However, because different regions of importin
are involved in
the interaction with SPN1 and importin
, RanGTP is not required for the
release of the m3G-cap-cargo, and the kinetics of this step is
faster than the release of the cNLS-cargo. Thus, our comparative analysis of
the U1 snRNP and the cNLS import pathways points to the differences in the NPC
docking and releasing steps of each pathway. It will be interesting to
investigate whether this is also true for other nuclear import pathways.
| ACKNOWLEDGMENTS |
|---|
|
|
|---|
| Footnotes |
|---|
Abbreviations used: BSA, bovine serum albumin; cNLS, classical nuclear
localization sequence; cNLS-protein, cNLS-bearing protein; EM, electron
microscopy; IBB, importin
-binding; IBB
, recombinant
-galactosidase molecules fused to the IBB domain of importin
;
IBBspn1, recombinant
-galactosidase molecules fused to the IBB domain of
snurportin1; NPC, nuclear pore complex; SPN1, snurportin1; WGA, wheat germ
agglutinin; zz-tag, two immunoglobulin-binding domains of Staphylococcus
aureus protein A.
Corresponding author. E-mail address:
pante{at}zoology.ubc.ca.
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