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Vol. 14, Issue 6, 2357-2371, June 2003
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* SBGM, CEA Saclay, 91191 Gif-sur-Yvette Cedex, France;
UMR CNRS 144, Institut Curie, 75248 Paris Cedex 05, France
Submitted October 30, 2002;
Revised January 23, 2003;
Accepted February 22, 2003
Monitoring Editor: Vivek Malhotra
| ABSTRACT |
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| INTRODUCTION |
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Members of the Sec7 family can be subdivided in two major classes: the
large (>100 kDa) ARF GEFs and the smaller (<100 kDa) ARF GEFs. The large
yeast ARF GEFs Gea1p, Gea2p, and Sec7p have orthologues in higher eukaryotes.
The yeast Gea1p and Gea2p proteins are 50% identical and at least partially
functionally redundant: strains carrying a deletion of either GEA1 or
GEA2 have no growth defect, whereas the double deletion strain is
inviable (Peyroche et al.,
1996
). On the basis of sequence analysis, yeast Gea1p and Gea2p
belong to a subfamily of ARF GEFs that also includes the mammalian GBF1
protein (Claude et al.,
1999
) and Arabidopsis GNOM/Emb30p
(Shevell et al.,
1994
; Busch et al.,
1996
). GNOM has been implicated in the regulation of a
BFA-sensitive specific endosomal trafficking pathway
(Geldner et al.,
2003
). In contrast to Gea and Gnom proteins, the GEF activity of
GBF1 protein is BFA resistant and exhibits in vitro specificity toward a
different class of ARFs (Claude et
al., 1999
). Mammalian p200GEP/BIG1 and BIG2 are related to
Sec7p. Smaller ARF GEFs such as ARNO, the cytohesins, and GRP1 exist solely in
higher eukaryotes.
Sec7p is localized to the Golgi complex in yeast. It plays an important
role in transport at multiple steps from the ER through the Golgi apparatus
and is an important regulator of membrane dynamics in the ER-Golgi system of
yeast (Franzusoff et al.,
1991
; Deitz et al.,
2000
). Yeast gea mutants have severe defects in protein
transport through the ER-Golgi system and in Golgi structure (Peyroche et
al., 1996
,
2001
;
Spang et al., 2001
).
Neither Gea1p nor Gea2p can replace Sec7p functionally in vivo, and vice
versa, Sec7p cannot compensate for the loss of Gea1/2p, indicating that each
must have a distinct role within the cell
(Peyroche et al.,
1996
). The existence of these different ARF GEFs in the cell may
determine specificity of coat recruitment.
The large ARF GEFs are peripherally associated membrane proteins found in
both membrane-bound and soluble forms
(Franzusoff et al.,
1991
; Peyroche et
al., 1996
; Claude et
al., 1999
; Yamaji et
al., 2000
; Spang et
al., 2001
; Kawamoto
et al., 2002
). The mechanisms by which the ARF GEFs are
localized to membranes are of crucial importance because their location is
thought to be a major determinant of the appropriate membrane sites of ARF
activation. It is not known whether membrane recruitment of large ARF GEFs
occurs by direct interaction with specific types of lipids or by a
membrane-localized protein partner or both. No canonical lipid-interacting
domain such as PH domains has been identified in any of the large ARF GEFs.
The Sec7 domain has been exhaustively characterized. It has been shown that
Gnom protein can homodimerize and interact with cyclophilin 5 via the DCB
(Dimerization and cyclophilin-binding) domain conserved in all the members of
the Gea/GBF/GNOM family (Grebe et
al., 2000
). However, the role of the rest of these large
proteins is poorly understood and may be involved in membrane localization and
regulatory functions. Hence, the identification of interacting partners of the
large ARF GEFs should help to elucidate the mechanism of ARF GEF recruitment
to the Golgi complex and the regulation of transport.
Here, we report the identification and characterization of a novel conserved Golgi-membrane protein named Gmh1p that interacts with Gea1/2p large ARF GEFs in yeast. Because Gmh1p has homologues in several eukaryotic organisms, we propose that Gmh1p participates in membrane-related functions of Gea/GNOM/GBF1 large ARF GEF proteins.
| MATERIALS AND METHODS |
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Antibodies and Immunoblotting
Western blot analysis was performed as previously described
(Peyroche et al.,
1996
). Dilutions used for the primary antibodies were as follows:
mouse monoclonal anti-HA.11 (Babco, Richmond, CA) 1:2000; anti-Myc mouse
monoclonal (Santa Cruz Biotechnology, Santa Cruz, CA) 1:3000; anti-Myc rabbit
polyclonal A14 (Santa Cruz) 1:4000; monoclonal anti-Dpm1p (Molecular Probes,
Eugene, OR) 1:500; and monoclonal anti-ATPase 60 kDa (Molecular Probes) 1:500.
Polyclonal antibodies were raised in rabbits against purified yeast ARF2
protein (Peyroche and Jackson,
2001
). A Gmh1p-specific peptide NDLPAGPQGQRRRNN (amino acids
923) was selected for antibody generation. This peptide was synthesized
with an additional C-terminal tyrosine, purified, coupled to OVA and injected
into rabbits by Neosystem (Strasbourg, France). The sera anti-Arf2p and
anti-Gmh1p was used to 1:1000 for Western blot analysis. HRP-conjugated
anti-rabbit or anti-mouse (Promega, Madison, WI) were used as secondary
antibodies (dilution 1:10000). Detection was performed with ECL
chemiluminescent reagents (Amersham-Biosciences) (UK).
gea1-6 Suppressor Screen
A gea1-6 strain was transformed with a yeast genomic library
carried in the 2-µm vector pFL44 (gift from F. Lacroute). Transformants
(100,000) were grown at 24°C for 12 h and then shifted to 34°C. For
growing colonies at 34°C, plasmids were isolated and sequenced.
Mating Assay
The plate mating assay is essentially as described by Letourneur et
al. (1994
). For
quantitation, haploid strains were grown in YPD and resuspended to 5
µDO/ml, and 0.5 ml of each suspension was then preincubated at the
appropriate temperature for 2 h. Mat a strains and Mat
SEY6210 testing
strain were then mixed and incubated for 6 h at the same temperature to allow
mating. Different dilutions of this mating mix were then spread on SC-Ade-Trp
to select diploids. After 3 d at 30°C, diploid colonies were counted.
Immunofluorescence Analysis of Yeast Cells
Immunofluorescence analysis were carried out as previously described
(Peyroche et al.,
2001
). Dilutions used for the primary antibodies were as follows:
purified mouse monoclonal anti-HA.11 (Babco) 1:100; anti-Myc mouse monoclonal
9E10 (Santa Cruz) 1:100; affinity-purified anti-Anp1
(Jungmann and Munro, 1998
)
1:250; and anti-Myc rabbit polyclonal A14 (Santa Cruz) 1:100.
Cell Culture and Transfection of HeLa Cells
HeLa cells were grown in Dulbecco's modified Eagle's medium (DMEM)
containing 4.5 g/l glucose (GIBCO, Scotland) supplemented with 10% fetal calf
serum (GIBCO), 5 mM glutamine, and 5 mM sodium pyruvate (GIBCO) in a 5%
humidified CO2 incubator. HeLa cells, plated on 12-mm round glass
coverslips the day before transfection, were transfected using a calcium
phosphate method (Jordan et al.,
1996
). For BFA-treated cells, BFA (5 mg/ml) purchased from the
Alexis Corporation (San Diego, CA) was added 2 h before fixation.
Immunofluorescence and Confocal Microscopy of Human Cells
Cells were fixed with para-formaldehyde 3% in PBS and quenched in 50 mM
glycine. After permeabilization in 0.2% saponin containing PBS and 1% BSA
cells were double-labeled with antibodies with the affinity-purified mouse
monoclonal HA-11 antibody (Babco) and affinity-purified antibodies raised
against Rab6 (Goud et al.,
1990
) or GMAP-210 (Rios et
al., 1994
) or Rab1
(Saraste et al.,
1995
). Coverslips were mounted in Mowiol (Hoechst AG). Secondary
antibodies were purchased from Jackson Corporation. Confocal laser scanning
microscopy and immunofluorescence were performed using a Leica or a TCS4D
confocal microscope (Leica Microsystems, Heidelberg, Germany).
Subcellular Fractionation, Membrane Association, and Protease
Protection Assays
Yeast cells were harvested at midlogarithmic phase, washed twice, and
resuspended in Spheroplast buffer (1.2 M sorbitol, 50 mM Tris-HCl, pH 7.5, 40
mM
-mercaptoethanol, 10 mM NaN3) to 20 µDO600
nm/ml. Cells were spheroplasted with zymolyase 100T (ICN) and disrupted
in lysis buffer (20 mM HEPES-KOH, pH 7.4, 100 mM KCl, 2 mM DTT, 1 mM PMSF,
Complete protease inhibitor cocktail; Boehringer-Mannheim) with a Dounce
homogenizer. The cell lysate was centrifuged twice at 500 x g
to remove cell debris. To verify that Gmh1p is an integral membrane protein,
we proceeded as described in Matern et al.
(2000
). For differential
centrifugation, gently lysed cells were prepared as abovementioned and
submitted to a 13,000 x g centrifugation for 1 h. Supernatant
fractions were then recentrifuged at 100,000 x g for 1 h.
Aliquots of pellet (P13 and P100) and supernatant fractions were analyzed by
Western blot after SDS-PAGE. Protease protection assay was performed as
described in Yang et al.
(1998
).
Two-hybrid Analysis
pAS
and pACTII were used to create fusions with Gal4-DNA binding
domain and Gal4 transcription activation domain, respectively (see
Table 1). Y190 strain was
transformed with the different plasmids and transformed cells were selected on
SD minimal medium plates supplemented with adenine and histidine. The cells
were then streaked on SD + adenine plates containing 10, 25, or 50 mM
3-aminotriazole to test expression of the first reporter gene HIS3.
The cells were also streaked on SD +adenine +histidine plates to test for
-galactosidase production in an overlay plate assay. At least three
independent experiments were performed for each two-hybrid analysis.
Immunoprecipitation Experiments
Yeast cells (40 µDO) were harvested at midlogarithmic phase and washed
once with 10 mM NaN3 and once with lysis buffer (20 mM HEPES, pH
7.2, 100 mM KCl, 5 mM MgCl2, and 1% Triton X-100). The cells were
disrupted with acid-washed glass beads (Sigma-Aldrich, St Louis, MO) in 0.1 ml
of lysis buffer supplemented with Complete protease inhibitor cocktail
(Roche-Boehringer, Mannheim, Germany) and Pefablock 1 mM (Roche). The cell
lysate was centrifuged twice at 500 x g, and supernatant then
was subjected to a 100,000 x g centrifugation at 4°C for 20
min. Cleared lysates were diluted 10-fold with lysis buffer lacking Triton
X-100 and incubated with 25 µl of protein G-Sepharose (Amersham Pharmacia)
coupled to anti-HA antibodies (12CA5) for at least 2 h at 4°C. The resin
was then washed twice with buffer containing 200 mM KCl and 0.1% Triton X-100
and resuspended in 2x SDS-Laemmli buffer before SDS-PAGE analysis.
| RESULTS |
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Defects
mutant, herewith designated gea1-6 for simplicity
(Peyroche et al.,
2001
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To reinforce the potential functional link between the protein encoded by
GMH1 and Gea1p, we investigated the effects of GMH1
overexpression in arf1
mutant cells. These mutant cells
exhibit defects at multiple transport steps
(Gaynor et al.,
1998
). In our strain background, these defects are accompanied by
a marked delay of growth especially at low temperatures
(Figure 1B). Strikingly, growth
of arf1
at either 16 or 23°C is almost completely restored
when cells contain a multicopy vector containing either GEA1 or
GMH1 (Figure 1B and
our unpublished results).
Conditional mutants gea2
gea1 show different
transport defects including in vitro retrograde transport defects (Peyroche
et al., 1996
,
2001
;
Spang et al., 2001
).
We used an in vivo assay to monitor defects in Golgi-to-ER traffic occurring
in gea1-6 cells (Letourneur
et al., 1994
). In this assay, the cell surface
-factor receptor Ste2p is fused to the ER-resident protein Wbp1p. By
virtue of this fusion, the receptor is retained in the ER and cannot mediate
mating. Only mutant cells in which the fusion protein is mislocalized to the
cell surface are competent for mating
(Letourneur et
al.,1994
). We tested appropriate gea1-6 strain,
along with negative control strains, for its ability to mate at different
temperatures. The gea2
strain does not mate at any temperature
(Figure 1C and our unpublished
results). In contrast, the gea1-6 strain display
temperature-dependent mating (Figure
1C and our unpublished results). This observation establishes for
the first time that gea1-6 cells display in vivo retrograde transport
defects. However, mating is efficiently reduced when GMH1 is
overexpressed in gea1-6 cells, indicating that moderate
overexpression of GMH1 cannot only restore growth defects but also at
least partially restore retrograde transport defects of gea1-6 cells.
Altogether, these genetic data suggest that Gmh1p could play a positive role
in an essential Gea1/2p-controlled step of ARF activation.
To study the phenotype of the haploid disrupted strain, we deleted the
entire GMH1 ORF in diploid cells that were then sporulated and
dissected into tetrads. The GMH1
haploids were viable,
indicating that GMH1 is dispensable for vegetative growth in standard
conditions (our unpublished results). However, strong overexpression of
GMH1 results in slightly slower growth of transformed cells that are
hypersensitive to BFA and partially defective for retrograde transport as
judged by the in vivo assay described above (our unpublished results).
Gmh1p Is a Member of a Phylogenetically Conserved Family of
Proteins
The predicted protein sequence encoded by GMH1 is shown in
Figure 2A. Yeast Gmh1p is a
273-residue protein with a calculated mass of 31.9 kDa and a
pKi equal to 9.2. Homologues were identified in
fission yeast Schizosaccharomyces pombe, Caenorhabditis elegans,
Arabidopsis thaliana, Drosophila melanogaster, and in mammals
(Figure 2A). Gmh1p and its
relatives from other species have similar length (244275 amino acid
residues) and contain several regions sharing identical sequence motifs
(Figure 2A). No other Gmh1p
homologues could be identified in S. cerevisiae on the basis of
sequence analysis.
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Hydropathy plot analysis of the yeast protein reveals five putative
membrane-spanning helices flanked by an N-terminal hydrophilic domain (
90
residues) and a short C-terminal domain (
10 residues;
Figure 2B). This overall
topology is conserved in the putative orthologues
(Figure 2B). Interestingly,
regions of strong homology are not restricted to the hydrophobic domains,
suggesting that nontransmembrane domains could play a key role in the
functions of these proteins.
Gmh1p Is an Integral Membrane Protein
To confirm the membrane location of Gmh1p predicted by sequence analysis,
we first performed biochemical fractionation experiments. For this purpose,
the endogenous GMH1 locus was modified to lead to the expression of a
3HA tag at the C terminus of the protein. This HA-tagged version of Gmh1p is
functional, based on the fact it suppresses the thermosensitive growth defect
of gea1-6 when overexpressed (our unpublished results). Yeast cells
expressing Gmh1p-3HA were spheroplasted and then lysed with a Dounce
homogenizer. Cell homogenates were then subjected to centrifugation to
separate membrane (pellet) and soluble (supernatant) fractions. The
distribution of Gmh1p in the fractions was then analyzed by Western blotting.
First, Gmh1p is efficiently pelleted from cell homogenates by centrifugation
at 100,000 x g, indicating that Gmh1p is associated with
membranes (Figure 3A, lanes 1
and 2). The pellet association was obtained even when Gmh1p was expressed from
a multicopy vector (our unpublished results). To determine the nature of this
association with the cellular membranes, cell homogenates were incubated with
different buffers before centrifugation
(Figure 3A). As shown in
Figure 3A, only detergent
treatment of the cell lysates led to a solubilization of Gmh1p. Altogether
these results indicate that Gmh1p is embedded in cellular membranes.
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To determine the membrane topology of the protein, we performed proteinase K digestion of the membranes containing N- or C-terminally HA-tagged Gmh1p. The proteins were then analyzed by Western blotting with anti-HA antibodies (Figure 3B). When the tag is located at the C terminus of Gmh1p, the epitope was still detectable indicating that the C terminus of the protein was protected against protease digestion in native conditions. The C terminus was accessible to protease digestion after solubilization of Gmh1p by Triton X-100 (our unpublished results). The appearance of a shorter polypeptide after protease treatment in native conditions (Figure 3B) suggests that a part of the protein is accessible to proteinase action. Indeed, when the HA tag is located at the N-terminus of Gmh1p, HA-Gmh1p is no longer detectable after proteinase K digestion, indicating that the epitope is accessible to the protease action even in absence of detergent. These results indicate that the N-terminus of Gmh1p faces the cytosol and the C terminus faces the lumen, consistent with the presence of an uneven number of transmembrane domains in Gmh1p. In the light of these experiments, it appears that the most conserved regions in the GMH1 family are oriented toward the cytosol.
Gmh1p Is an Early Golgi Protein
To investigate the intracellular localization of Gmh1p, both subcellular
fractionation and indirect immunofluorescence were performed. On differential
fractionation of cell lysates, Gmh1p was completely absent from the
supernatant fraction and was exclusively detected in fractions pelleted at
either 13,000 or 100,000 x g (Figures
3A and
4A). A proportion of
Gmh1p3HA sedimented at 13,000 x g but the majority of
the protein sedimented at 100,000 x g in a fraction enriched
for the early-medial Golgi protein Emp47p-myc
(Schroder et al.,
1995
; Figure 4).
Interestingly, high levels of expression of Gmh1p from a multicopy plasmid led
to a higher proportion of the protein in the subcellular fraction sedimenting
at 13,000 x g, which is enriched for ER harboring Dpm1p and for
vacuolar membranes containing the 60-kDa subunit of the vacuolar ATPase
(Figure 4A). It has already
been reported that high levels of expression of Golgi proteins can lead to
their accumulation in the ER (Munro,
1991
; Yang et al.,
1998
).
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To confirm and potentially extend the HA-Gmh1p fractionation data, we localized the protein in whole cells by indirect immunofluorescence. As shown in Figure 4B, Gmh1p exhibited primarily a punctate staining pattern typical for Golgi-localized proteins in yeast cells. On high expression of Gmh1p, a perinuclear ring staining characteristic of the ER compartment was observed and colocalized with the ER resident proteins Dpm1p and Kar2p (our unpublished results). The level of ER-like staining is higher when the cells reach stationary phase.
To determine which compartments the Gmh1p punctate staining pattern
corresponded to, we performed double immunofluorescence experiments using
several Golgi-localized markers. As shown in
Figure 4B (top and middle
panel), a significant colocalization was observed with the early-medial
protein Emp47p and the cis-Golgi enzyme Anp1p. Some but not all of
the structures containing Gmh1-HA also contain the C-terminally Myc-tagged
Emp47p (Figure 4B, top panel).
As shown in Figure 4B (middle
panel), some spots decorated with Gmh1p correspond to Anp1p containing
structures. Partial colocalization has often been seen for proteins that
reside in the same region of the Golgi
(Rayner and Munro, 1998
;
Wooding and Pelham, 1998
). As
localization at steady state in the Golgi results from very dynamic processes,
such differences could reflect variations in the kinetics of delivery to and
removal from compartments. There was clearly less obvious overlap of Gmh1p
staining with CHS5-myc or Sec7p that have been shown to localized to late
Golgi compartments (Figure 4B,
bottom panel and our unpublished results;
Franzusoff et al.,
1991
; Santos and Snyder,
2000
).
Because endosomal/prevacuolar proteins also exhibit highly punctate
staining patterns by indirect immunofluorescence microscopy, we next
determined whether some of the punctate Gmh1p-decorated structures could also
be present in endosomal structures. For this purpose, we examined Gmh1p
immunolocalization in the class E vps mutant vps27
.
Mutations in any of class E VPS genes lead to an exaggerated form of
prevacuolar compartment that contains endocytosed proteins as well as Golgi
proteins en route to the vacuole (Bryant
et al., 1998
). The Gmh1p staining pattern was unchanged
in the vps27 mutant (our unpublished results), suggesting that a
minority (if any) of Gmh1p resides in prevacuolar/endosomal compartments.
Taken together our results indicate that Gmh1p preferentially locates to the
early Golgi complex at steady state. Moreover, the same localization was
observed for the human putative orthologue hGMH1b expressed in yeast (our
unpublished results).
Gmh1p Cycles through the ER
Golgi localization at steady state can be the result of a very dynamic
process. For example, some Golgi membrane proteins such as Emp47p or Rer1p
undergo retrograde transport from Golgi to ER
(Schroder et al.,
1995
; Sato et al.,
2001
). To test whether Gmh1p could also follow a recycling pathway
to the ER, we made use of the thermosensitive sec12 mutant. In
sec12 cells, secretion is blocked before the budding of transport
vesicles from the ER at nonpermissive temperature but retrograde transport
from Golgi to ER still occurs under these conditions
(Schroder et al.,
1995
; Lewis and Pelham,
1996
). If Gmh1p localization results from a continuous shuttle
between ER and Golgi, a specific block of forward transport should result in
Gmh1p being trapped in the ER. During the incubation at nonpermissive
temperature further protein synthesis was blocked by addition of
cycloheximide. Cells were then fixed and stained for Gmh1p. A normal punctate
staining is observed for Gmh1p at the permissive temperature
(Figure 5). In contrast, at
36°C perinuclear staining typical of the yeast ER is seen for Gmh1p and
Emp47p (Figure 5 and our
unpublished results). This result demonstrates that Gmh1p recycles between
Golgi and ER.
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Human hGMH1 Localizes to the cis-Golgi in HeLa Cells
To determine whether the Golgi localization of Gmh1p is a common feature of
the GMH1 family, we performed expression and immunolocalization of hGMH1 in
HeLa cells. Figure 6 shows
costaining of cells for hGMH1-HA and other well-characterized Golgi markers in
human transfected cells. Fluorescence microscopy revealed for hGMH1 a strong
compact juxtanuclear staining, a structure characteristic of the Golgi
apparatus. In addition, we observed a number of punctate structures present in
the Golgi region as well as more peripheral parts of the cytoplasm
(Figure 6). To confirm that the
compact region containing hGMH1-HA corresponded to a part of the Golgi
apparatus, we compared the staining of HeLa cells with antibodies directed
against the HA epitope and with a polyclonal serum directed against the
cis-Golgi localized human GMAP-210
(Rios et al., 1994
).
There was almost complete overlap between GMAP-210 and hGMH1
(Figure 6). hGMH1 staining was
also very similar to that of Rab1 (Figure
6), a small GTPase that localizes to early compartments of the
secretory pathway (Saraste et
al., 1995
). In contrast, even if the overall localization of
hGMH1-HA is similar to the one observed for Rab6 protein, after a close
examination, Rab6, which is described to locate in medial/trans compartments
in HeLa cells (Goud et al.,
1990
; Antony et al.,
1992
) could be readily distinguished from hGMH1
(Figure 6). It suggests that
Rab6 and hGMH1 reside in adjacent compartments. It is not clear whether the
small region of overlap represents partial colocalization of the two proteins
or represents the failure to resolve two close but distinct fluorescence
signals. Altogether, these observations led us to conclude that a very large
fraction of hGMH1 is localized to the cis-Golgi in HeLa cells. BFA
treatment of cells results in rapid loss of the Golgi as a distinct organelle
due to the redistribution of the majority of cis/medial Golgi content
and membrane into the ER (Lippincott-Schwartz et al.,
1989
,
1990
). By contrast, proteins
of intermediate compartment (IC) are retained in what appears to be IC-derived
elements upon treatment
(Lippincott-Schwartz et al.,
1990
). After 2 h of BFA treatment, hGMH1 was not redistributed in
a fine reticular pattern characteristic of ER labeling but was rather present
in numerous small punctate structures scattered throughout the cytoplasm
(Figure 6). These structures
are also decorated by GMAP-210, which has been shown to be redistributed in
IC-positive structures after BFA treatment
(Rios et al., 1994
).
We conclude that hGMH1 is an early-Golgi protein that is induced to
redistribute to the intermediate compartment by BFA. Some Golgi proteins that
cycle through the ER/IC such as gp74 show the same type of redistribution upon
BFA treatment (Alcalde et al.,
1994
).
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Gmh1p Physically Interacts with Gea1/2p
Allele-specific interactions usually indicate that the proteins encoded by
these genes interact, although not necessary directly. To determine whether
Gmh1p could be a physical partner of Gea1p, we undertook to analyze putative
Gmh1p/Gea1p interactions using the two-hybrid system
(Fields and Song, 1989
).
Several integral membrane proteins such as Yip1p and Yif1p have been
successfully identified as prey or used as bait in such a system
(Yang et al., 1998
;
Matern et al., 2000
).
We found that a Gal4 activating-domain fused to full-length Gmh1p could
specifically activate transcription of reporter genes in the presence of
full-length Gea1p fused to the Gal4 DNA-binding domain
(Figure 7A and our unpublished
results). Moreover, the study of different truncated versions of Gea1p fusions
indicates that a C-terminal domain located downstream of the Sec7 domain of
Gea1p (amino acid residues 749-1263) is sufficient for its binding to Gmh1p in
the two-hybrid system (Figure
7A). We next wanted to determine whether this interaction was
restricted to the yeast protein or was a common feature of Gmh1p family. For
this purpose, we constructed a two-hybrid fusion with hGMH1. We established
that hGMH1 could interact with the C-terminal portion of Gea1p[7491408]
in the two-hybrid system (Figure
7A), suggesting that structural requirements for the interaction
with Gea1p are conserved in the human homolog hGMH1.
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To corroborate the results of the two-hybrid analyses, which suggested specific physical interaction between Gmh1p and Gea1p, we prepared detergent-lysed cells and performed immunoprecipitation experiments. In these experiments, a myc-tagged version of Gea1p [7491408] and HA-tagged version of Gmh1p were coexpressed in yeast cells. Cells expressing 9myc-Gea1p[7491408] produced two major products detectable by immunoblot (Figure 7B). Two major bands are also observed for full-length Gea1p (unpublished data). As can be seen in Figure 7B, Gea1p[7491408] was specifically eluted from Gmh1p-HAloaded columns. To extend our observations, we performed immunoprecipitation experiments with a myc-tagged form of full-length Gea2p expressed at endogenous level. As shown in Figure 7C, the entire Gea2p-Myc is specifically immunoprecipitated with Gmh1p-HA. Altogether, these results strongly suggest that both Gea1p and Gea2p proteins can interact with Gmh1p and that this interaction involves the C-terminal part of the Gea proteins. Moreover, we show here that there is a substantial overlap of the Gea2p and Gmh1p signals in immunofluorescence experiments (Figure 7D), which is consistent with a physical interaction between the two proteins occurring in vivo.
Gea1pGmh1p Interaction Is Abrogated in gea1-6
Mutant
Strikingly, the two amino-acid substitutions present in the gea1-6
allele are located in the C-terminal region sufficient for interaction with
Gmh1p (Figure 8A;
Peyroche et al.,
2001
). This region includes a 300-amino-acid region located just
downstream of the Sec7 domain and specifically shared by members of the
Gea/GBF/GNOM family of ARF GEFs (Jackson
and Casanova, 2000
). One of the substitutions (that changes
leucine 862 to a serine residue) is located in a highly conserved motif and
affects one leucine residue shared by all the members of the Gea/GBF/GNOM
family (Figure 8A). To address
whether the interaction between Gmh1p and Gea1p is impaired in mutant forms of
Gea1p, we performed two-hybrid analysis using different mutant forms of the
C-terminal domain of Gea1p. We have verified by Western blot analysis that the
level of expression of wild-type and mutant forms of Gea1p fusion proteins was
equivalent under these experimental conditions
(Figure 8B). Although the
different hybrid proteins were expressed to similar levels, no binding
activity was observed with the gea1-6 form of full-length Gea1p or
its C-terminal domain (Figure
8C and our unpublished results), suggesting that one of the
characteristic of the mutant form of GEA1 is to interact less
efficiently with Gmh1p. Moreover, the single L862S substitution is sufficient
to abrogate the interaction (Figure
8C). This observation is consistent with our previous results that
indicate this interaction may be conserved in higher eukaryotes and therefore
is likely to concern shared motifs in Gea/GBF/GNOM proteins. Because
overexpression of Gmh1p can restore growth of gea1-6 cells at
nonpermissive temperature, it is tempting to propose that the impairment of
Gmh1p-Gea1p interaction is at least one of the growth-limiting factors in
gea1-6 mutant cells.
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Effect of Loss of Gmh1p on the Distribution of Gea Proteins
If Gmh1p is a membrane receptor for Gea1/2p, we might expect that deletion
of GMH1 would lead to mislocalization of Gea1p and/or Gea2p. We have
tested for immuno-localization of Gea2p-myc in the absence of GMH1. We failed
to detect massive changes in the membrane localization of Gea2p by
immunofluorescence as shown in Figure
9A. We next tested for mislocalization of Gea2p in fractionation
experiments. When we performed these experiments with gently lysed cells, most
of Gea2p (>75%) was in the supernatant fractions. However, under these
conditions, we observed a slight but reproducible reduction in the amount of
Gea2p associated with the pellet fractions prepared from cells lacking Gmh1p
(Figure 9B). It could reflect a
more labile association with membranes of the pool of membrane-associated Gea2
protein. In summary, the majority of Gea protein remains associated with the
membranes in the absence of Gmh1p, but at least a fraction of Gea proteins
seems to be associated more weakly under these conditions.
|
| DISCUSSION |
|---|
|
|
|---|
Gmh1p Is a Novel Golgi Protein Conserved from Yeast to Human
We observe that Gmh1p and its human homolog hGMH1 are both localized to the
Golgi apparatus in their respective organisms. Moreover, hGMH1 expressed in
yeast also localizes to the yeast Golgi, indicating that the signals and/or
the mechanisms that control the localization of Gmh1 proteins are conserved
from yeast to human. Most of the conserved motifs in the Gmh1 family reside
outside of the putative hydrophobic transmembrane domains, suggesting that the
conservation of the overall topology is not the sole key of Gmh1p function and
that the nonhydrophobic domains are important for the conserved function(s) of
Gmh1p. We established that the N-terminal portion of Gmh1p faces the cytosol
and the C-terminal segment faces the lumen. This orientation places the
conserved motifs on the cytosolic face of the membrane, suggesting that
conserved functions are related to cytosolic partners.
GMH1 Family and Protein Trafficking
The C. elegans GMH1 homolog is the product of the UNC-50
gene, which was identified in a screen for mutants resistant to an agonist of
acetylcholine receptors, levamisole
(Brenner, 1974
;
Lewis et al., 1980
).
UNC-50 appears to be required for cell-surface expression of
assembled acetylcholine receptors (Lewis
et al., 1987
) but not for their synthesis, suggesting
that UNC-50 promotes transport of these receptors to the plasma membrane (A.
Gottschalk and W.R. Schafer, personal communication). A rat homolog of UNC-50
named UNCL has been cloned (Fitzgerald
et al., 2000
). In this study, the authors suggest that
UNCL is localized to the ER and the inner nuclear membrane in SaOS-2
osteosarcoma cells. They showed that moderate expression of UNCL in
Xenopus oocyte or in COS cells can increase the number of active
surface acetylcholine receptors. The data from UNC-50 and UNCL studies
concerning the surface expression of nicotinic receptors are perfectly
consistent with a role in protein trafficking for these proteins because
membrane surface expression of oligomeric receptors requires functional
endocytic and exocytic pathways.
GMH1 gene is dispensable for vegetative growth in yeast. However,
in C. elegans, mutations in UNC-50 gene result in a
phenotype of movement defects, indicating that the UNC-50 product is important
for nervous system function. The ubiquitous expression observed for the rat
homolog (Fitzgerald et al.,
2000
) and the existence of a yeast homolog favor a broader
function not restricted to the nervous system. Moreover, genetic data in
C. elegans suggest that UNC-50 may have an essential
function (Lewis et al.,
1980
). How can we explain the discrepancy between yeast and higher
eukaryotes? One possibility is that another protein has related functions in
yeast. Although, there is no obvious homolog of Gmh1p in the yeast genome, it
is possible that a second protein shares a redundant function. Indeed,
although the proteins Got1p and Sft2p display little direct sequence
similarity, these two proteins share common global topology and are functional
homologues (Conchon et al.,
1999
). Another possibility is that the function(s) assumed by
Gmh1p is not essential in yeast, but is essential in higher eukaryotes.
Indeed, whereas deletion of all members of p24 family of proteins in yeast has
no detectable effect on growth (Springer
et al., 2000
), disruption of one member of the family
resulted in early embryonic lethality in mice
(Denzel et al.,
2000
). To seek clues to the function of GMH1, it would be
interesting to isolate mutant yeast strains in which it is essential. Our
preliminary results have led to the isolation of such a synthetic lethal
mutation. These mutant cells display defects in protein trafficking (our
unpublished results).
Gmh1p and Small GTPases
The open reading frame encoding Gmh1p has been isolated in two independent
large scale two-hybrid screens as a putative interacting protein for the yeast
small G proteins Arl3p and Ypt31p (Uetz
et al., 2000
; Ito
et al., 2001
). Arl3p is an ARF-like protein that has been
implicated in ER-to-Golgi transport in yeast
(Huang et al., 1999
).
Ypt31p belongs to the Ypt/Rab family and acts at multiple stages of transport
(Benli et al., 1996
;
Jedd et al., 1997
).
Strikingly, genetic interactions have been observed between Ypt31/32p and ARF
regulating factors (GEFs and GTPase-activating proteins) in yeast
(Jones et al., 1999
;
Zhang et al., 2002
).
Gmh1p could thus participate in the cross-talk between ARF and Ypt activities.
In the light of our present data, it was tempting to imagine that Gmh1p might
interact with ARF proteins. However, we failed to display any direct
interaction between Gmh1p and ARF proteins. We could not confirmed the
published interactions between Gmh1p and Ypt31p or Arl3p in our two-hybrid
system, but we observe a weak interaction between the Rho4 GTPase and Gmh1p
(our unpublished data). Given the number of independent findings of Gmh1p
interacting with different small G proteins, it remains an interesting
possibility that it might interact with a GTPase.
Characterization of a Functional Domain of Gea1/2p
Unlike ARF1/2 or others gea1-6 suppressors we have
identified, overexpression of GMH1 has no effect on gea1-4
cells growth. Importantly, the gea1-4 allele exhibits mutations in
the Sec7 domain of Gea1p, whereas in gea1-6 the mutations are in the
carboxy-terminal domain (Peyroche et
al., 2001
). All these genetic observations are in agreement
with our biochemical data. Indeed, we show here that Gmh1p specifically
interacts with the carboxy-terminal domain of Gea1/2p and fails to interact
with the Sec7 domain (our unpublished observations). Gea1p and Gea2p are more
than 1400 amino acid proteins, but, to date, only the 200 amino-acid Sec7
domain has been well characterized. One can imagine that one or more specific
domains of the large ARF GEFs contain direct targeting information or is
responsible for interaction with a partner in a hetero-oligomeric complex that
contains such targeting information. Our data suggest that the C-terminal
segment of Gea may help to localize the GEF by promoting contact with Gmh1p,
which is anchored in the Golgi-membrane (but see below).
Gmh1p Is a Membrane Partner of Gea/GBF/GNOM Family Proteins
In yeast, there are three large ARF GEFs: Sec7p, Gea1p, and Gea2p. Can
Gmh1p be a general partner for all these ARF GEFs? It is established that
Sec7p and the pair Gea1/2p have nonredundant essential functions in yeast
(Peyroche et al.,
1996
). They also show distinct localizations at steady state:
whereas Sec7p is mainly associated with a late-Golgi compartment and
colocalizes with Kex2p, a marker for the yeast TGN
(Franzusoff et al.,
1991
), Gea1/2p are primarily early-Golgi proteins
(Spang et al., 2001
and Figure 8). This difference
is also observed in mammalian cells because BIG1 and BIG2 (Sec7p homologues)
have been localized to the TGN, whereas GBF1 (a human Gea1/2p counterpart) is
mainly associated with the cis-Golgi compartment
(Mansour et al.,
1999
; Zhao et al.,
2002
). We observe that Gmh1p is an early-Golgi protein that
colocalizes with Gea2p but not with Sec7p. This is also true for mammalian
counterparts of Gmh1p and Gea1/2p. Indeed, we have established that hGMH1 is a
cis-Golgi protein in human cells, and recent studies that GBF1 mostly
colocalizes with cis-Golgi markers
(Kawamoto et al.,
2002
; Zhao et al.,
2002
). These observations favor a preferential, if not specific,
interaction of Gmh1p for Gea1/2p family proteins.
We have identified GMH1 because its overexpression rescues the
thermosensitive growth defect of the gea1-6 mutant and have shown
that Gmh1p interacts physically with Gea1/2p. Because the Gmh1p-Gea1p
interaction is impaired in a gea1-6 mutant, we propose that
overexpression of Gmh1p in gea1-6 cells overcomes the growth defect
by helping this leaky interaction. These observations point to an involvement
of Gmh1p in Gea/GNOM/GBF1 ARF-related functions. With regard to our results,
different hypotheses can be proposed. Gmh1p could participate in the
recruitment of Gea1/2p to Golgi membranes. In other words, Gmh1p could be a
Golgi-specific receptor that facilitates specific docking of Gea proteins to
the right cellular membrane. The existence of such a "receptor"
has been proposed to achieve the correct localization of large ARF GEFs in the
cell (Roth, 1999
). The
existence of a 90-kDa membrane protein that may be the receptor for Sec7p has
been reported (Wolf et al.,
1996
) but has not been identified at the molecular level. There is
no massive redistribution of Gea2p from membranes to cytosol in the absence of
Gmh1p but at least a fraction of Gea proteins seems to be associated more
weakly with membranes under these conditions. Hence, these results suggest
that Gmh1p participates in the association of Gea proteins with membranes but
show that Gmh1p is not absolutely required for this process. As mentioned
above, these mitigated results could be explained by the existence of an
alternative or complementary mode of localization for Gea proteins (i.e.,
interaction with a functionally redundant protein an/or with specific
lipids).
We cannot exclude that the interaction with Gmh1p modulates Gea ARF GEF
activity. Gmh1p might lead to a conformational change in the
membrane-associated pool of Gea, making it more active, which in turn would
lead to more efficient activation of ARF. This hypothesis is consistent with
our observation that overexpression of GMH1 can rescue growth of
cells with limited amount of Arfp. Even though we failed to show any direct
interactions between ARF proteins and Gmh1p, we cannot rule out the
possibility that Gmh1p interacts at the same time with ARF and Gea1/2p in
facilitating ARF exchange on membranes. Another possibility is that Gmh1p is
an effector of ARF that also interacts with one of its GEFs. There are at
least two different large ARF GEFs families in the cells that localize to
different compartments. An attractive hypothesis is that effector-GEF
interactions may link activation of ARF at a particular location within the
cell to activation of specific effectors, i.e., that GEFs may participate
directly in effector selection as suggested by Pasqualato et al.
(2001
). Effector complexes
containing a GEF have already been identified for Rab GTPases and are supposed
to couple nucleotide exchange to effector recruitment
(Horiuchi et al.,
1997
; Wurmser et al.,
2000
).
In summary, Gmh1p acts as a Golgi-membrane partner of some large ARF GEFs, and further studies will determine its precise role in ARF/ARF GEF function and more generally in membrane trafficking in eukaryotic cells.
| ACKNOWLEDGMENTS |
|---|
|
|
|---|
| Footnotes |
|---|
Present address: Cell Biology and Metabolism Branch, NICHD, NIH, Bethesda,
MD 20892-5430.
Corresponding author. E-mail address:
annep{at}Matthieu.saclay.cea.fr.
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