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Vol. 15, Issue 10, 4735-4748, October 2004
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Is Required for Actin Dynamics in Caenorhabditis elegans and Acts via Functionally Different Actin-binding Repeats



* Department of Biochemistry, Faculty of Medicine and Health Sciences, Ghent University and Medical Protein Research, Flanders Interuniversity Institute for Biotechnology, Ghent, Belgium;
Department of Pathology, Emory University, Atlanta, GA 30322
Submitted March 17, 2004;
Accepted July 9, 2004
Monitoring Editor: David Drubin
| ABSTRACT |
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expressed in developing neurons and crucial during oocyte maturation in adults. TetraThymosin
has four repeats, each related to the actin monomer-sequestering protein thymosin
4 and assists in actin filament elongation. For homologues with similar multirepeat structures, a profilin-like mechanism of ushering actin onto filament barbed ends, based on the formation of a 1:1 complex, is proposed to underlie this activity. We, however, demonstrate that tetraThymosin
binds multiple actin monomers via different repeats and in addition also interacts with filamentous actin. All repeats need to be functional for attaining full activity in various in vitro assays. The activities on actin are thus a direct consequence of the repeated structure. In containing both G- and F-actin interaction sites, tetraThymosin
may be reminiscent of nonhomologous multimodular actin regulatory proteins implicated in actin filament dynamics. A mutation that suppresses expression of tetraThymosin
is homozygous lethal. Mutant organisms develop into adults but display a dumpy phenotype and fail to reproduce as their oocytes lack essential actin structures. This strongly suggests that the activity of tetraThymosin
is of crucial importance at specific developmental stages requiring actin polymerization. | INTRODUCTION |
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Also the
-thymosin or WH2 module (Van Troys et al., 1996b
; Paunola et al., 2002
) is found as repeats. In Van Troys et al. (1999
), we first reported the sequence of a hypothetical Caenorhabditis elegans protein tetraThymosin
with the striking feature that it consists of a four timesrepeated thymosin
-module. The actin-binding determinants of this module are clearly delineated: a hexapeptide motif (17LKKTET22 in thymosin
4) and a hydrophobic cluster in a preceding
-helix (Vancompernolle et al., 1992
; Van Troys et al., 1996b
; Rossenu et al., 1997
; Simenel et al., 2000
; Rossenu et al., 2003
; Domanski et al., 2004
). Given their repeated structures, tetraThymosin
, Drosophila ciboulot, and the amoebal protein actobindin (harboring four, three, and two repeats, respectively; Lambooy and Korn, 1986
; Van Troys et al., 1999
; Boquet et al., 2000
) form a novel subset of
-thymosins. Both ciboulot and actobindin have been demonstrated to display a similar promotive effect on filament growth as is observed for profilin (Boquet et al., 2000
; Hertzog et al., 2002
). Indeed, profilin serves as a polymerization catalyst by capturing an actin monomer and ushering the actin onto the growing filament barbed end as a 1:1 profilin:actin complex, whereupon profilin itself is released (Pantaloni and Carlier, 1993
; Kang et al., 1999
). Ciboulot is suggested to act on elongation via the same mechanism as profilin by forming a 1:1 complex with an actin monomer (Boquet et al., 2000
). The complex of the first domain of ciboulot and monomeric actin have very recently been crystallized (Hertzog et al., 2004
).
The activity of the larger
-thymosins contrasts that of single repeat
-thymosins that, by forming a 1:1 complex, only function in monomer sequestering. We postulated that the newly acquired functions (e.g., promoting polymerization) are a consequence of the repeated structure. Indeed, in contrast to the reported 1:1 stoichiometry for its homolog ciboulot, we observe formation of tetraThymosin
complexes with multiple actin monomers. All four tetraThymosin
repeats are functional actin-binding units and, moreover, have different preferences for monomeric and filamentous actin. The combined action of the repeats is absolutely required for the observed effects on actin polymerization. We provide evidence that tetraThymosin
is, among other, enriched in developing neuronal structures and maturing oocytes. The observed defects present in tetraThymosin
-/- organisms demonstrate its essential role in the generation of specific actin structures in vivo.
| MATERIALS AND METHODS |
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Wild-Type and Mutant ProteinstetraThymosin
Peptides
cDNA was amplified via PCR from a tetraThymosin
EST containing phagemid y326d7, obtained from Y. Kohara (Genome Biology Lab, National Institute of Genetics, Mishima, Japan) and NcoI and BamHI cloned into the bacterial expression vector pET11d (Promega, Madison, WI). From this wild-type (WT) construct, we generated tetraThymosin
variants carrying one or multiple mutated repeats via one or several consecutive rounds of mutagenesis using the PCR-based QuikChange method (Stratagene, La Jolla, CA). The generated mutations result in substitution of the first four amino acids of the conserved motif of the targeted repeat into four alanines (Table 1). For the N-Cys tetraThymosin
-construct, needed for surface plasmon resonance (SPR) measurements (see below), a variant 5'-PCR-primer with an additional Cys-codon was used, resulting at the amino acid level in MACAV instead of MAAV as amino terminal sequence. All constructs were checked by sequencing.
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Recombinant tetraThymosin
WT and mutant proteins were obtained after isopropyl-
-thiogalactoside induction of Escherichia coli MC1061 cells harboring the pET11d constructs and plasmid pT7POL26 (Mertens et al., 1995
). We purified tetraThymosin
WT and mutants from bacterial lysates by DEAE anion exchange chromatography in 25 mM Tris-HCl, pH 8.0, 0.1 mM EDTA, and 1 mM dithiothreitol (DTT), followed by hydrophobic interaction chromatography (phenyl sepharose) using 25% saturated (NH4)2SO4, 25 mM Tris-HCl, pH 8.0, as starting conditions. The purified proteins were concentrated via ultrafiltration (Amicon, Beverly, MA), dialyzed against 25 mM Tris-HCl, pH 8.0, 1 mM DTT, 0.02 mM EDTA, and stored on ice.
TetraThymosin
peptides were chemically synthesized on a model 431A peptide synthesizer (Applied Biosystems, Foster City, CA), purified, and checked for correct mass. Their concentration was determined as in Van Troys et al. (1996b
).
Immunofluorescence Microscopy
Wild-type strain N2 was obtained from Caenorhabditis Genetics Center (Minneapolis, MN). Adult worms were stained as described (Finney and Ruvkun, 1990
). Worm embryos (obtained by cutting gravid adults; Epstein et al., 1993
) and dissected gonads (prepared as in Rose et al., 1997
) were attached on poly-lysinecoated slides by freeze-cracking, fixed with methanol at -20°C for 5 min, and stained with antibodies. Rabbit polyclonal anti-tetraThymosin
antibody raised against full-length recombinant protein at the Centre d'Economie rurale, Laboratoire d'Hormonologie (Marloie, Belgium) was enriched by affinity purification over tetraThymosin
coupled to CNBr-Sepharose 4B (Pharmacia, Piscataway, NJ). The specificity of the tetraThymosin
stainings is based on loss of signal in a control experiment using antibody preincubated with resin-coupled recombinant tetraThymosin
. Mouse monoclonal anti-actin (C4) and mouse monoclonal anti
-tubulin antibody were from ICN Biomedicals (Costa Mesa, CA) and Amersham Biosciences (Piscataway, NJ), respectively. 4',6-diamidino-2-phenylindole, dihydrochloride (DAPI, Sigma, St. Louis, MO) was used at 0.1 µg/ml as DNA-stain. Samples were viewed using a Nikon Eclipse TE2000 (Garden City, NY) inverted microscope with a 40x CFI Plan Fluor objective. Images were captured by a SPOT RT Monochrome CCD camera (Diagnostic Instruments, Sterling Heights, MI) and processed by the IPLab imaging software (Scanalytics, Billerica, MA).
RNA Interference Experiments and Gene Knockout
For RNAi we either microinjected dsRNA (0.5 µl 1.0 mg/ml) of the entire coding region of tetraThymosin
generated by aMEGAscript T7-kit (Ambion, Austin, TX) in adult C. elegans or used soaking or feeding. The latter was performed as described in Ono and Ono (2002
) using E. coli HT115(DE3) harboring plasmid L4440 (provided by Dr. A. Fire, Carnegie Institution of Washington, Baltimore, MD). The tth-1 null allele gk43 was generated by the C. elegans Reverse Genetics Core Facility (University of British Columbia, Canada). This allele was maintained with the szT1 balancer in the strain VC115 (+/szT1 [lon-2 (e678)] I; tth-1 (gk43)/szT1 X). tth-1 (gk43) carries a deletion of 715 base pairs in F08F1.8 (cosmid F08F1 coordinates 1819918914 inclusive). This strain was outcrossed three times with no attempt of recombination within X chromosome. Genomic DNA fragments of the tth-1 gene were amplified from a single worm as described (Barstead and Waterston, 1991
) by two rounds of PCR using nested sets of primers (with 5'-GCCCCATTATTGTTTTTTCACC and 5'-CCTCGGCGACATCTGAAATG as first round, IR (5'-CCACTTATCGGTGACTAACA) and IL (5'-GACTCCGAACATCGAAAACA) as second round primers). To determine the tetraThymosin
protein levels, the lysate of 50 worms, obtained by incubating at 97°C for 2 min in 2% SDS, 80 mM Tris-HCl, 5%
-mercaptoethanol, 15% glycerol, 0.05% bromophenol blue, pH 6.8, was analyzed by SDS-PAGE (15%) and subjected to Western blot as described previously (Ono and Ono, 2002
) with anti-tetraThymosin
antibody. Anti-actin antibody was used to monitor equal loading levels of the lysates.
Reverse Transcription-PCR
Total RNA (1 µg) from WT worms was used as template for amplifying RNA for act-1 (a muscle actin gene), F08F1.3 and tth-1 using the SuperScript III One-Step RT-PCR System with Platinum TaqDNA polymerase (Invitrogen, Carlsbad, CA). As sense and antisense primers we used for act-1: 5'-GATCGAATTCTCTTCTATGTGTGACGACGAGGTTGC and 5'-GATCGCTAGCTTAGAAGCACTTGCGGTGAACGATG, for F08F1.3: 5'-TGCGTTTTGTATACATCTTCCTGG and 5'-ACTTTTCAAATCTAATGATGGCAGGTT, and for tth-1: 5'-TGGCTGCCGTCACCGAACTT and 5'-ATTGAGCTTCAGTGACGCGGACAT.
Northern Blot
Embryo, four larval stages (L1 to L4) and adult N2 C. elegans were collected according to Sulston and Hodgkin (1988
). Ten micrograms total RNA of each of these stages, prepared using RNeasy (Qiagen, Valencia, CA), was separated on a 1.5% agarose gel with 5% formaldehyde, transferred to nylon membrane (ZetaProbe, Bio-Rad, Richmond, CA) and UV-cross-linked. Northern blotting was performed according to Eyckerman et al. (1999
).
G- and F-actinbinding Assays
Ca-ATP-G-actin was prepared from rabbit skeletal muscle (Spudich and Watt, 1971
) and further purified via Sephacryl S-300 (Pharmacia) in G-buffer (5 mM Tris-HCl, pH 7.7, 0.1 mM CaCl2, 0.2 mM ATP, 0.2 mM DTT, 0.01% NaN3). We assayed for monomer binding of tetraThymosin
using band shift in nondenaturing PAGE (Safer, 1989
). Actin monomer binding was also assayed using G-actin labeled with 7-chloro-4-nitrobenzeno-2-oxa-1,3-diazole (NBD) after N-ethylmaleimide treatment according to Detmers et al. (1981
). Emission spectra of 1.5 µM NBD-actin in the presence of increasing concentrations of tetraThymosin
WT in G-buffer were recorded in a Hitachi F4500 spectrophotometer (Woodbury, NY; using 470 nm as excitation wavelength). The fluorescence change at the emission maximum (535 nm) induced by binding of tetraThymosin
to actin is
(delta)-fluorescence: the measured fluorescencethe fluorescence of 1.5 µM NBD-actin in the absence of ligand. Alternatively,
-fluorescence at 535 nm was measured for a set of samples in which the NBD-actin concentration was changed so that the ratio of NBD-actin to tetraThymosin
WT was increased up to 4:1. In this experiment, tetraThymosin
was constant at 4 µM.
F-actin binding of tetraThymosin
protein was monitored using cosedimentation: samples containing varying concentrations, as indicated, of prepolymerized actin were incubated for 1 h at RT with WT (40 µM) or mutant (60 µM) tetraThymosin
and subsequently spun at 100,000 x g (Beckman airfuge, Berkeley, CA) for 20 min at RT. A control sample with only tetraThymosin
was used to correct for the small amount of self-aggregated and hence self-sedimented tetraThymosin
.
For binding of peptides (that mimic the tetraThymosin
repeats) to monomeric or filamentous actin, zerolength cross-linking reagents (1-ethyl-3(3-dimethylaminopropyl)carbodiimide [EDC, Sigma] and sulfo-N-hydroxysuccinimide [sulfo-NHS, Pierce, Rockford, IL]) were added to incubated mixtures of the peptides (increasing concentrations as indicated in figure) and a constant amount of G-actin or prepolymerized F-actin (10 µM), respectively (as in Van Troys et al., 1996a
, 1996b
). For the F-actin-peptide interactions the crosslinking step was followed by sedimentation (100,000 x g, 10 min, at RT). The cross-linking step is included given the potentially high off rates of the peptides (based on data for WT tetraThymosin
; see SPR measurements). In addition, using this strategy for F-actin interaction, we prevented having to correct the amount of F-actin bound peptide for the free peptide that is aspecifically captured in the actin pellet upon sedimentation. The concentration of actin and tetraThymosin
proteins or peptides used in these assays is shown in figures or figure legends. Binding was evaluated by analyzing the samples of sedimentation and/or cross-linking on SDS-mini slab gels (Bio-Rad) followed by Coomassie staining and densitometry.
Surface Plasmon Resonance
The N-Cys-tetraThymosin
variant, carrying a unique cysteine residue, was labeled using LC-biotin-iodoacetamide (Pierce) following instructions of the manufacturer. After removal of free label by desalting, the biotinylated tetraThymosin
was coupled in HBS buffer to a streptavidine-coated chip (SA) mounted in a BiacoreX (Pharmacia). The system was washed with G-buffer supplemented with 150 mM NaCl. G-actin in G-buffer, to which we added 150 mM NaCl immediately before injection, was passed in different concentrations over the chip using a flow of 5 µl/min. The salt was added to prevent nonspecific binding (probed on a nontetraThymosin
coated chip [blank] analyzed in parallel) and did not induce actin polymerization within the time span of the measurement. The blank corrected increase in response units (RU) is proportional to the amount of complex formed and the stoichiometry (n) of the tetraThymosin
-G-actin interaction under these conditions can be calculated using the equation:
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, in casu 118 RU. Using this value, Rmax will equal either 310, 620, 929, or 1240 RU, depending on a stoichiometry n of 1, 2, 3, or 4, respectively. The observation that the RU values measured for the highest G-actin concentrations converge to a maximal read-out (see Figure 7B) indicates that the experimental RU increase of 864 RU for 60 µM (curve a, Figure 7B, corresponding to n = 2.8) approaches Rmax and that n equals three, i.e., three actin monomers vs. one tetraThymosin
. The overall affinity for the formation of this complex (
15 µM) is derived from the G-actin concentration yielding Rmax/2. This corresponds to the G-actin concentration for half fractional occupancy (C50%).
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Actin Polymerization Assays
Actin was labeled on Cys 374 using N-pyrenyl-iodoacetamide (Kouyama and Michashi, 1981). Pyrene fluorescence was measured on a Hitachi F4500 spectrophotometer using 365 and 388 nm as excitation and emission wavelength, respectively. We induced polymerization of G-ATP-actin (10 µM, 10% labeled) in absence or presence of tetraThymosin
WT (2 µM) or variants (225 µM as indicated) by the addition of 100 mM KCl, 1 mM MgCl2 and followed fluorescence increase as a function of time.
We assessed the sequestering capacity of tetraThymosin
WT, mutants, or peptides based on steady state measurements of F-actin (2.5 µM, 10% labeled) as described in Van Troys et al. (1996b
) but using gelsolin capped actin filaments (molar ratio gelsolin:actin, 1/200). The decrease in fluorescence, correlated with the amount of actin complexed by tetraThymosin
, is used to calculate a Kdseq as in Van Troys et al. (1996b
) but taking into account the different possible stoichiometries of the sequestered complex tetraThymosin
-(actin)n-complex with n between 1 and 3 (i.e., using the equation that the slope of the decrease in F-actin vs. the total tetraThymosin
concentration is given by n CMC/(Kd + CMC) with CMC the critical monomer concentration). We performed similar measurements using uncapped filaments at final actin concentrations of 2.5 µM. The hypothetical data corresponding to pure sequestering in the presence of actin filaments with free barbed ends were derived as in Hertzog et al. (2002
).
The putative promotive activity of WT or mutant tetraThymosin
on filament elongation is measured from induced CMC-shifts at equilibrium in the presence and absence of thymosin
4 as in Pantaloni and Carlier (1993
).
| RESULTS |
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Homologue with Repeated Structure in C. elegans
homologue in C. elegans, we discovered a predicted protein of 151 amino acids (accession number NM_077029
[GenBank]
, gi:17551491, www.wormbase.org; Van Troys et al., 1999
4. We named this protein tetraThymosin
and the gene tth-1. Figure 1 shows the four repeats aligned to human thymosin
4 and to the repeats of the analogous proteins actobindin from A. castellanii and ciboulot from Drosophila melanogaster. This alignment shows that the two regions important for actin interaction in thymosin
4, a hexapeptide motif and a preceding hydrophobic triplet (Van Troys et al., 1996b
repeats. All four tetraThymosin
motifs, even the most diverse motif LHSTPV in the second repeat, could in principle allow actin-binding based upon an extensive mutagenesis study of phage displayed thymosin
4 (Rossenu et al., 2003
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Is Present in Specific Actin-rich Structures at Various Stages during Development
protein was confirmed by a Western Blot of total lysate of adult C. elegans using antibodies raised against purified recombinant protein (see Materials and Methods); this revealed a single band of similar size as the recombinant protein (our unpublished data). A Northern Blot of different developmental stages (Figure 2) shows that tetraThymosin
mRNA is present throughout the worm's lifespan. To gain insight in the physiological processes tetraThymosin
may participate in, we studied tissue distribution and intracellular localization using immunofluorescence microscopy. The localization of tetraThymosin
is shown in oocytes (in dissected gonads of adult worms, Figure 3), in embryos (Figure 4A) and in whole adult organisms (Figure 4B). We tested several different fixation conditions and found that the optimal conditions to preserve the signals for tetraThymosin
were cold methanol (-20 C for 5 min) for embryos and dissected gonads and a mixture of 4% formaldehyde and 50% methanol (on ice for 60 min) for whole-mount staining of adult worms. Preincubation of the antibody with tetraThymosin
coupled to Sepharose beads eliminated immunofluorescent signals (unpublished results), indicating that the signals were specific for tetraThymosin
. TetraThymosin
was maternally expressed and in the adult gonad (Figure 3) diffusely present in the cytoplasm of the oocytes, with strong staining at the cell cortex (Figure 3A) where also actin is present (Figure 3, B and C). In the distal arm of the gonad, tetraThymosin
localized to the inside edges of the membrane cubicles surrounding germ cell nuclei (Figure 3A). Here, tetraThymosin
did not localize to the lateral side of the membrane cubicles where actin is arranged in a "honeycomb" structure (Strome, 1986
was enriched in the cell-cell contact where actin was also concentrated. The tetraThymosin
signal was clearly apparent until the four-cell stage (Figure 4Ab) and became weaker later on (unpublished data). At the comma stage (
290 min after the first cell division) (Figure 4A, ce), tetraThymosin
staining was observed at the developing nerve ring that is the largest axonal bundle in the nematode body and that positions around the isthmus of the pharynx. TetraThymosin
was evident in this region even before a clear actin signal was apparent (Figure 4Ac). In larvae and adults (Figure 4B), immunofluorescence yielded a diffuse but specific staining of the entire worm body with enrichment at the intestinal tract and spermatheca (Figure 4Ba). At these stages, in contrast to what is observed in developing embryo (see above), no prominent signal was observed in the head region where the nerve ring is located (Figure 4B, b, d, and f). These immunostaining patterns were reproducible in three or more experiments and in 20 or more worms or embryos.
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TetraThymosin
-/- Organisms Show Defects in Oocyte Maturation
To further assess the importance of tetraThymosin
in vivo, we first used RNA interference, by feeding, soaking, or microinjection, to inhibit protein expression in live animals. However, this technique did not result in reduced tetraThymosin
levels as judged by Western blot, and consequently we did not observe an altered phenotype in the treated worms or in their progeny. This is consistent with the result of a large-scale RNA-interference project (Kamath et al., 2003
).
We however obtained a tetraThymosin
mutant, tth-1 (gk43), that has a deletion of 715 base pairs in the 5'-upstream region (Figure 5, A and B). By Western Blot, the tetraThymosin
protein was undetectable in the tth-1 (gk43) homozygotes (Figure 5C), indicating that the deletion removes an essential part of the tetraThymosin
promoter sequence. Analogously, staining of mutant worm with anti tetraThymosin
antibody was negative. It should be noted that this deletion is located within 4-kb upstream of the adjacent predicted gene F08F1.3 with unknown function. Therefore, we could not a priori exclude the possibility that the deletion also affected expression of this neighboring gene. However, the mRNA of F08F1.3 (expected size: 650 base pairs) is not present in WT adult worms as demonstrated in Figure 5D showing a reverse transcription-PCR analysis on total RNA of WT worms. In accordance, reports by others also suggest that F08F1.3 may not be a functional gene: i) no Expressed Sequence Tag clones have been isolated for this gene (www.wormbase.org), ii) the ORFeome project was not able to amplify cDNA for this gene (Reboul et al., 2003
) and (iii) RNAi of this gene causes no detectable phenotype (Kamath et al., 2003
). Together, these observations strongly suggest that the deletion in tth-1 (gk43) specifically affects expression of tth-1. The tth-1 (gk43) homozygotes died as late larvae (L3 or L4) or young adults displaying a dumpy phenotype (Figure 5E). Staining of mutant worms with rhodamine-phalloidin revealed no remarkable abnormalities in actin-rich tissues including pharynx, body wall muscle, vulva, and spermatheca (our unpublished results). Therefore, the specific cause of the dumpy phenotype is not clear. In addition, the tth-1 mutants showed a maternal-effect lethal phenotype. The F1 tth-1 homozygotes from the tth-1/+ heterozygous parents survived to late larvae or adults but produced only dead eggs or arrested embryos. Mating the F1 tth-1 homozygous hermaphrodites with WT males did not rescue lethality (unpublished data). A more detailed phenotypic analysis of dissected gonads (Figure 6) revealed that mutant eggs that were ovulated from the ovary were significantly deformed in the spermatheca and uterus (Figure 6, D and F, arrow). In WT worms, actin (Figure 6A, arrows) and tetraThymosin
(Figure 3A, arrows) are concentrated at the cortex of oocytes in the ovary. However, in the mutant oocytes, actin is uniformly distributed in the cytoplasm and not concentrated at the cortex (Figure 6B, arrows). Because methanol fixation, used for the stainings in Figure 6 is not optimal to preserve microfilaments, we also fixed dissected gonads with 4% formaldehyde, stained with rhodamine-phalloidin and confirmed that 0% of WT (n = 23) and 74% of tth-1 mutants (n = 23) showed reduced actin filaments at the cortices of the oocytes. Localization of tetraThymosin
to the oocyte cortex (Figure 3A) in WT organisms and the tth-1 mutant phenotype suggest that tetraThymosin
is required in assembly of the cortical actin network necessary for oocyte rigidity. As a result, mutant oocytes do not endure the ovulation process that involves vigorous contraction of the ovarian myoepithelial cells (Hubbard and Greenstein, 2000
).
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TetraThymosin
Binds Multiple Actin Monomers and Has Both Sequestering and Filament Binding Capacity
In view of its important role in the nematode, it is essential to gain insight in the effect of tetraThymosin
on actin and actin dynamics using in vitro analysis. In line with its homology with thymosin
4, it is expected that tetraThymosin
interacts with actin monomers but because tetraThymosin
consists of a fourfold repeat of the
-thymosin module, complexes containing multiple actins could potentially be formed. The purified protein partly shifts monomeric
-skeletal muscle actin in native PAGE and intriguingly, several extra bands are already apparent in the mixture (arrowheads, Figure 7A) indicative of complexes with different stoichiometries. TetraThymosin
can be chemically crosslinked to actin monomers using a zero-length cross-linker and it retains C. elegans G-actin from total worm lysates using affinity chromatography (our unpublished results). TetraThymosin
binding to NBD-labeled monomeric actin (1.5 µM) induces a dose-dependent increase in fluorescence at the emission maximum of the fluorophore (Figure 7B). To compare this tetraThymosin
activity with that reported for its homologues (ciboulot, actobindin), we used nonlinear fitting of the data assuming a 1:1 stoichiometry. The thus obtained value 1.72 µM (SD 0.51 µM) is comparable; however, below we present several experiments indicating that the stoichiometry is not one to one. Indeed, doing an inverse experiment, i.e., increasing the concentration of NBD-actin over tetraThymosin
, yields data that the actin-tetraThymosin
interaction is not a simple binding event. In a Scatchard plot the data obtained under these conditions cannot be fitted by linear regression (Figure 7C). This nonlinearity is caused by the presence of multiple binding sites (either of different affinity or showing cooperativity) and hence indicative of a stoichiometry larger than 1:1. For this reason, we additionally performed SPR measurements (Biacore) in which monomeric actin is allowed to interact with tetraThymosin
that is coupled to a sensor chip (Figure 7D) as a means to determine the stoichiometry of complex formation. The observed increase in response units (
RU) is a measure for the tetraThymosin
-actin complex formed and this signal increases at higher actin concentrations (Figure 7D). As outlined in detail in Materials and Methods, this SPR analysis demonstrates that at least three actin monomers can simultaneously interact with one tetraThymosin
molecule. This is clearly in contrast with conclusions made for the homologous protein ciboulot where a 1:1 stoichiometry is proposed (Boquet et al., 2000
; Hertzog et al., 2002
, 2004
). The steepness of the slopes of the binding curves suggests that on and off rates are fast. In this assay the overall affinity of tetraThymosin
for actin monomers over the different contributing binding sites is
15 µM (C50%-value based on the theoretical maximal response (Rmax) most closely corresponding to the highest measured
RU and in casu corresponding with an 1:3 complex). This is consequently an overall Kd for three G-actin molecules binding to tetraThymosin
and this, together with buffer differences (note that the NaCl concentration is higher than in the NBD-actin interaction assay, see Materials and Methods), may account for the higher Kd-value compared with the one described above. Given the multimodular structure of tetraThymosin
, the results on stoichiometry (presented in Figure 7, C and D) are consistent with the concept that more than one repeat interacts with actin.
We analyzed whether the observed interaction of tetraThymosin
with actin monomers results in a monomer sequestering effect. When actin filaments are capped at their barbed ends, the addition of increasing amounts of tetraThymosin
leads to a strong decrease in filamentous actin (Figure 7E,
). This indicates that, under these conditions, tetraThymosin
binds actin monomers and shifts the equilibrium to the monomeric form, similarly as observed for thymosin
4. From the slope of the decrease in F-actin plotted vs. tetraThymosin
concentration (Figure 7E), we calculated an overall affinity that varies from 10 to 28 µM, depending on the possible stoichiometry of the sequestered (actin)n-tetraThymosin
complex (n = 1, 2 or 3, see above). At present it is unknown whether these values are the resultant of independent or cooperative binding of the repeats. This value thus forms an indication of the overall sequestering capacity of this protein.
The single repeat protein thymosin
4 is a pure sequestering agent, independent whether the actin filaments with which the actin-thymosin
4 pool is in equilibrium, have capped or free barbed ends (Pantaloni and Carlier, 1993
). In contrast, profilin only effectively sequesters actin monomers in the presence of barbed end capped filaments (Pantaloni and Carlier, 1993
; Kang et al., 1999
), a property used to demonstrate its ability to deliver actin monomers to free barbed ends and hence promote barbed end elongation. A same effect has been described for tetraThymosin
homologues ciboulot and actobindin (Boquet et al., 2000
; Herzog et al., 2002). Similar as in Hertzog et al. (2002
), we performed the same assay as above but now using filaments with free barbed ends in order to determine whether the sequestering activity of tetraThymosin
is dependent on the status of the filament ends. Figure 7E (
) shows that using filaments with free ends, the equilibrium amount of F-actin decreases much less as a function of tetraThymosin
concentration. If, under this condition, tetraThymosin
were a pure sequestering agent (with a Kd of 10 µM (n = 1) to 28 µM (n = 3), see above), a decrease in F-actin should be observed that only differs from the one when barbed ends are capped as a result of the different critical monomer concentration when barbed ends are free. We theoretically calculated this decrease that should accompany pure sequestering activity in the presence of free barbed ends (Figure 7E, gray lines, n varies from 1 [top gray curve] to 3 [bottom gray curve]). It is evident that this is significantly different from the experimental decrease observed (
; note this conclusion is independent of the assumed stoichiometry for the sequestered complex). In line with Herzog et al. (2002), this may be indicative of a barbed end elongation promoting activity for tetraThymosin
(see Discussion).
In cosedimentation experiments, tetraThymosin
also interacts with actin filaments. In function of increasing F-actin concentration more tetraThymosin
is cosedimenting (Figure 7F, white bars). We calculated that 1.2, 2.3, 4.0, and 13.0% of the total tetraThymosin
is cosedimenting in the presence of 2.5, 5.0, 7.5, and 12 µM F-actin, respectively, whereas only 0.7% sediments in the absence of actin. An estimate, based on relative intensities of the actin and tetraThymosin
bands, as derived from densitometry of the Coomassiestained gel on which the samples were analyzed (taking size differences into account), suggests that tetraThymosin
binds to the filament in a molar ratio varying from 1:51:10 to actin protomers for the tetraThymosin
-actin ratio's used here. This low ratio may point at a relatively weak interaction or alternatively suggests that tetraThymosin
targets only ATP-protomers at the barbed end of the actin filaments in line with its effect on polymerization at this end (see also Discussion). The significance of the F-actin interaction is also shown using individual tetraThymosin
repeats and mutant tetraThymosin
proteins (see below).
All Four TetraThymosin
Repeats Can Interact with Actin
We set out to determine the contribution of each repeat of the full-length tetraThymosin
protein in the multiple effects on actin described above and hence to understand why this protein has a repeated structure. Initially, we determined which repeats function in G- or F-actin binding. The derived stoichiometry of the tetraThymosin
-G-actin complex already indicates that multiple tetraThymosin
repeats contribute to the formation of a large tetraThymosin
-actin complex. It does however not allow evaluating the contribution of each of the different tetraThymosin
repeats. To gain more insight in this, we initially studied four peptides (r1r4, Figure 1) expected to mimic each repeat in actin binding based on the known binding determinants of thymosin
4 (Van Troys et al., 1996b
). All four peptides can be EDC-cross-linked to G-actin in a concentration-dependent manner, albeit to different extents, with r3 showing lowest efficiency (unpublished data). This is informative about relative affinities of the repeats although differences in crosslinking efficiency cannot be ruled out. As the intact protein has affinity for actin filaments, we also analyzed F-actin interaction under physiological salt conditions using cross-linking of the individual peptides to prepolymerized actin followed by sedimentation. Two of the four tetraThymosin
peptides, namely r2 and r3, interact with protomers in the actin filament (Figure 8A), already at the lowest peptide concentrations tested. In contrast for the repeat 1 and 4 peptides, we do not observe significant cross-linking to F-actin, proving the specificity of the method. Note that, under these polymer conditions, peptide r4-G-actin cross-linking was again observed, combined with an increase in G-actin (Figure 8A, supernatant), which suggests a strong sequestering activity for peptide r4. The latter additionally suggests that the actin interaction for repeat r3 is most likely not the effect of dynamic incorporation of G-actin-peptide cross-linked complexes into the filament but rather bona fide F-actin binding by this repeat. Under these conditions, repeat 2 cross-links both to F-actin and in a lower extent to G-actin (see supernatant fraction, Figure 8A).
The Repeats Cooperate during Actin Sequestering and Inhibition of Polymerization
Given that two of four repeats display F-actinbinding capacity, we investigated the contribution of each repeat in the sequestering activity of tetraThymosin
. Therefore we performed the sequestering assay with capped filament ends (Figure 8B) using four tetraThymosin
full-length mutants in which each time three of four repeats were inactivated by mutation of their motif sequences (Table 1: tT
R1tT
R4, the repeat indicated in the name is unchanged). These mutant proteins display similar cross-linking characteristics as their peptide counterparts r1r4 (unpublished data). Figure 8B shows that these mutants display significant differences in sequestering capacities. tT
R4 is the strongest sequester of the four mutants, although it is less efficient than WT. Next to tT
R4 only tT
R1 has sequestering activity; hence, the WT sequestering affinity is likely due to the combined activities of these two repeats. In contrast, mutants tT
R3 and tT
R2 have completely lost their sequestering capacity and intriguingly increase fluorescence as a function of concentration. For tT
R3, this is consistent with the r3-F-actin interaction (see above) and possibly with F-actin stabilization by this repeat at steady state. Figure 7F shows that this mutant tT
R3 also cosediments with actin filaments (gray bars, corresponding to 1.4, 3.1, 4.9, and 16.4% of total tT
R3 in the presence of 2.5, 5.0, 7.5, and 12 µM actin, respectively; 0.8% of total tT
R3 sediments in the absence of actin). We note that, performing the same sequestration experiment as in Figure 8B with the peptide mimetics r1r4 yielded identical results except for the second repeat (unpublished results), because peptide r2 still has weak sequestering activity. Hence, repeat 2 apparently has a mixed G- and F-actinbinding phenotype (see also Figure 8A). The result obtained for tT
R2 (Figure 8B), may thus be the effect of (weak) F-actinbinding capacity of repeat 2 enhanced by residual F-actinbinding present in repeat 3 via residues outside the mutated motif.
Analyzing the effect of this mutant series on salt-induced actin polymerization (Figure 8C) confirms the functional differences between the repeats. WT tetraThymosin
at 2 µM completely inhibits polymerization of 10 µM actin during the time span of the experiment, although polymerization reaches its plateau value after overnight incubation. This inhibitory activity is weaker or lost for every mutant tetraThymosin
protein tested that contains only one intact repeat because only higher concentrations of the mutants generate an effect (shown in a concentration-dependent manner for tT
R4, Figure 8D). Consistent with its stronger sequestering activity, tT
R4 is the most efficient of this mutant series. A same concentration of the mutants tT
R1 or tT
R2 also inhibit salt-induced actin polymerization but always to a lesser extent than WT tetraThymosin
. tT
R3 at 25 µM appears to have no inhibitory effect on polymerization indicating this mutant has lost the sequestering capacity, consistent with its observed F-actin interaction.
Using the same assay, we tested a second series of mutants in which only one of four repeats was inactivated (tT
R2,3,4, tT
R1,3,4, tT
R1,2,4 to tT
R1,2,3, Table 1, the indicated repeats are unchanged). Figure 8E shows that none of these mutants, tested like WT at 2 µM, displays WT activity. This again indicates that all repeats participate in actin binding and that none of the repeats is dispensable to obtain the WT inhibitory effect on actin polymerization.
We cannot exclude that the decreased effects of the mutants on actin are in part induced by altered folding of intact repeats when adjacent repeats are mutated. However the observations that each of the repeats also functions under its individual form of peptide mimetic is a strong argument against a determining role for folding differences in the mutant activities.
Taken together, the data obtained with peptide mimetics, with mutants with only one repeat intact or with those that have one repeat inactivated, demonstrate that in none of the cases a single repeat displays WT activity.
Full Effect of tetraThymosine
on the G-/F-actin Balance at Steady State Using Uncapped Filaments Requires the Combined Activity of All Repeats: Repeat 3 Is Essential but Not Sufficient for This Activity
TetraThymosin
, like ciboulot and actobindin, behaves differently with respect to actin filaments with free or capped barbed ends (see above). This difference has been proposed to result from a positive effect on barbed end elongation and to act via a same mechanism as profilin, i.e., by forming a 1:1 complex with actin (Hertzog et al., 2002
). Our results above however show the functionality of multiple actin-binding repeats in the tetraThymosin
-actin interaction. To gain further insight in the underlying mechanism, we performed for WT tetraThymosin
and selected mutants the in vitro assay presented by Pantaloni and Carlier (1993
) in which a possible barbed end elongation promoting effect of the protein of interest is derived from the nonadditive shift in critical monomer concentration (CMC) of actin polymerization observed in the additional presence of the sequestering agent thymosin
4. For WT tetraThymosin
(Figure 9A) this nonadditive CMC-shift is indeed clearly observed: The CMC-shift induced by tetraThymosin
in the presence of thymosin
4 is much smaller than the shift for thymosin
4 (Figure 9A, detailed view in Figure 9B). In Figure 9C, the effect of tetraThymosin
mutant tT
R1,2,4 on the CMC shift is shown using the same assay. This shows that the effect of thymosin
4 and of this mutant, that lacks the filament binding repeat 3, on the CMC appears additive: the WT effect is lost. We also tested tetraThymosin
variants, tT
R2,3,4, tT
R1,3,4, and tT
R1,2,3, in which only repeat 1, 2, and 4, respectively, are mutated (Table 2: these data for tetraThymosin
WT, and all four mutants were determined independently of the data presented in Figure 9). Note that for these three mutants, the nonadditive effect on CMC shift in the presence of thymosin
4 is still observed but less pronounced. Thus, our data indicate that repeat 3 is essential and repeats 1, 2, and 4 all three contribute (to more or less similar extent) in generating the WT effect in this assay.
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presented in this work suggest an active role for this C. elegans protein in actin-based motile processes in cells. Our data show that tetraThymosin
is strikingly present in embryonic neuronal tissue, i.e., in the developing nerve ring. Expression of tetraThymosin
is however absent in the adult nerve ring, indeed suggesting that its presence in these neuronal cells is mainly required during formation of the neuronal bundle, a process driven by actin polymerization. Similarly, ciboulot is important in fly brain metamorphosis (Boquet et al., 2000
, cannot survive. Some of the phenotypes of the knock out animals are consistent with a crucial role of tetraThymosin
in specific actin-related processes during the worm life cycle. Most notably, formation of the cortical actin in oocytes during their maturation appears dependent on tetraThymosin
. Deletion of tetraThymosin
causes defects in this actin structure and prevents the normal ovulation process and consequently reproduction. It is intriguing that both tetraThymosin
mRNA and protein can be detected at all developmental stages, whereas the observable phenotypes detected in knockouts are only limited: a dumpy phenotype and fragile oocytes. The maternal-effect lethality of the tth-1 mutation suggests that the maternal supply of the tetraThymosin
protein from the heterozygous parents is sufficient for many morphogenetic processes in the homozygous mutants. It is also possible that the tetraThymosin
activity can in a number of processes be compensated for by the activity of other, simultaneously expressed actin-binding proteins. Prime candidates herein may be the three profilin isoforms present in C. elegans (Polet et al., unpublished results). In D. melanogaster, overexpression of chicadee, the fly profilin, indeed rescues the brain defects caused by lack of ciboulot (Boquet et al., 2000
TetraThymosin
expression patterns in WT worms and the defects observed in tth-/- homozygotes reveal its crucial role in actin polymerization based processes. This is underscored by biochemical data presented here that show tetraThymosin