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Vol. 15, Issue 11, 5158-5171, November 2004
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* Program in Cellular Biotechnology, Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland;
Department of Biology and The Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, MA, 02454; and
Departments of Biochemistry and Anatomy and Structural Biology, and Center for Synchrotron Biosciences, Albert Einstein College of Medicine, Bronx, NY 10461
Submitted June 2, 2004;
Accepted August 24, 2004
Monitoring Editor: David Drubin
| ABSTRACT |
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-sheet structure in the C-terminus of CAP and adjacent sequences. Using site-directed mutagenesis, we define evolutionarily conserved residues that mediate binding to ADP-G-actin and demonstrate that these activities are required for CAP function in vivo in directing actin organization and polarized cell growth. Together, our data suggest that in vivo CAP competes with cofilin for binding ADP-actin monomers, allows rapid nucleotide exchange to occur on actin, and then because of its 100-fold weaker binding affinity for ATP-actin compared with ADP-actin, allows other cellular factors such as profilin to take the handoff of ATP-actin and facilitate barbed end assembly. | INTRODUCTION |
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Srv2/CAP was originally hypothesized to function as an actin monomer sequestering protein, because it was reported to bind G-actin with 1:1 stoichiometry with a Kd of 0.5-5.0 µM and to suppress the spontaneous polymerization of actin (Gieselmann and Mann, 1992
; Freeman et al., 1995
; Gottwald et al., 1996
; Hubberstey et al., 1996
). However, two recent biochemical studies revealed that Srv2/CAPs are not simple actin monomer-sequestering proteins, but instead contribute to actin dynamics by recycling ADF/cofilin and actin monomers for new rounds of actin filament depolymerization and polymerization, respectively (Moriyama and Yahara, 2002
; Balcer et al., 2003
). These activities are supported by studies in vivo. In yeast, srv2 mutants display reduced rates of actin patch turnover and have genetic interactions with specific cof1 alleles (Balcer et al., 2003
). In mammalian cells, the depletion of CAP results in an accumulation of ADF/cofilin in abnormal cytoplasmic aggregates and in decreased rates of actin filament depolymerization and polymerization (Bertling et al., 2004
).
Although a role for Srv2/CAP in promoting actin dynamics is now clearly demonstrated, the specific nature of the Srv2/CAP-actin monomer interaction underlying this function remains unknown. Many actin monomer-binding proteins, such as profilin,
-thymosins, ciboulot, and MIM (Missing In Metastasis), bind to ATP-G-actin with a higher affinity than ADP-G-actin (Carlier et al., 1993
; Vinson et al., 1998
; Hertzog et al., 2002
; Mattila et al., 2003
), whereas ADF/cofilin and twinfilin bind preferentially to ADP-G-actin (Maciver and Weeds, 1994
; Carlier et al., 1997
; Ojala et al., 2002
). The nucleotide preference of actin interactions has important consequences for the roles these proteins play in controlling actin dynamics. Whether Srv2/CAPs prefer ADP- or ATP-G-actin has not been reported. Furthermore, the actin-binding site of Srv2/CAP has not been defined. Based on limited deletion analyses, the actin-binding site was suggested to lie within the C-terminal
150 amino acids of the protein (Gerst et al., 1991
; Zelicof et al., 1996
). The crystal structure of the C-terminus of Srv2 (residues 369-526) has recently been solved and shown to consist of an unusual
-strand structure that forms a homodimer with an extensive interface (Dodatko et al., 2004). Adjacent to this
-strand domain is a WH2 domain, which is a ubiquitous ATP-G-actin binding protein motif (Baum et al., 2000
; Paunola et al., 2002
). However, the relative contributions of Srv2/CAP's
-strand and WH2 domains for actin-binding interactions have not been examined.
Here, we report that the C-terminus of yeast Srv2/CAP binds with a strong preference to ADP-actin monomers compared with ATP-actin monomers, competes directly with ADF/cofilin for actin binding, and specifically blocks barbed end assembly. Through deletion analysis, we demonstrate that high-affinity ADP-G-actin binding requires the
-strand region (369-526) and adjacent sequences (253-368) of Srv2. Thus, the actin-binding domain is more extensive than previously suggested. Within the
-strand region, we identified specific surface residues that are critical for high-affinity actin binding. Interestingly, the WH2 domain does not contribute to ADP-actin monomer binding and makes only a minor contribution to ATP-actin interactions. By analyzing these mutants in vivo, we provide direct evidence that ADP-actin monomer binding is essential for the role of Srv2/CAP in regulating actin dynamics and cell morphogenesis in budding yeast.
| MATERIALS AND METHODS |
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Plasmids for expressing amino- and carboxyl-terminal fragments of Srv2 protein in Escherichia coli were generated by PCR amplifying the appropriate coding sequences from wild-type yeast genomic DNA. The oligonucleotides PL30, PL31, E2369, E2370, and F0254 (listed in Table 2) used in the amplifications generated NcoI and HindIII sites at the 5' and 3' ends of the PCR fragments, respectively. The fragments corresponding to Srv2 amino acids 1-259, 253-526, and 253-373 were then digested and ligated into the pGAT2 vector (Peränen et al., 1996
). Specific mutations were introduced into Srv2253-526 and Srv2369-526 constructs by site-directed mutagenesis using the pairs of mutagenic oligonucleotides listed in Table 2 and subcloned into NcoI-HindIII digested pGAT2 vector. For expressing the shorter carboxyl terminal fragment of Srv2 (369-526), the DNA encoding these residues was amplified by PCR from wild-type genomic DNA and subcloned into the NdeI and HindIII sites of the pMW172 expression vector (Dodatko et al., 2004).
Protein Expression and Purification
Glutathione-S-transferase (GST) fusion proteins of Srv2 fragments and mouse MIM-CT were expressed in E. coli BL21 (DE3) cells. The production, thrombin-cleavage, and purification of these proteins was performed as previously described for mouse MIM-CT (Mattila et al., 2003
). After separation from GST by thrombin digestion, Srv2253-526 was purified further by anion exchange chromatography. Untagged Srv2369-526 was purified essentially as described in Dodatko et al. (2004). S. cerevisiae cofilin, capping protein, and profilin were expressed and purified as described in Amatruda and Cooper (1992
), Lappalainen et al. (1997
), and Wolven et al. (2000
). Rabbit muscle actin was prepared from acetone powder as described (Pardee and Spudich, 1982
).
Actin Monomer-binding Assay
The interaction of wild-type and mutant Srv2 fragments with actin monomers was examined by measuring the fluorescence of NBD-labeled G-actin as described in Mattila et al. (2003
). Rabbit muscle actin was labeled by NBD-Cl as described in Detmers et al. (1981
) and Weeds et al. (1986
). ADP-NBD-actin was prepared by incubation with hexokinase-agarose beads (Sigma, St. Louis, MO) and glucose for 3 h at 4°C (Pollard, 1986
). We used 0.2 µM actin and varied the concentration of Srv2 constructs from 0 to 8-20 µM. The reactions were carried out at room temperature in physiological ionic conditions (2 mM Tris, pH 8.0; 0.1 mM CaCl2; 0.1 mM DTT, 0.2 mM ADP or ATP; 0.5 mg/ml bovine serum albumin; 1 mM MgCl2; 0.1 M KCl). The normalized enhancement of fluorescence, as determined by the equation:
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was measured with BioLogic MOS250 fluorometer (Claix, France) at each concentration of Srv2 with an excitation at 482 nm and emission at 535 nm. The data were analyzed using SigmaPlot software and fitted using the following equation:
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where z and c are described in the following two equations:
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The competition assays were carried out as described in Ojala et al. (2002
). The binding was plotted as a function of increasing amounts of Srv2 in the presence of constant amounts of ATP-actin and MIM-CT, e.g., 0.2 and 0.3 µM, respectively. The data were fitted using the approximated equation:
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where variable [Srv2] is the concentration of the competing fragment, [MIMCT] is the constant concentration of MIM-CT, KSrv2 and KMIM-CT are the respective dissociation constants (KMIM-CT = 0.06 µM [Mattila et al., 2003
]).
Actin Depletion Pull-down Assays
GST-Srv2 fusion proteins were expressed as described for MIM-CT in Mattila et al. (2003
) in 1-2 liters of Luria broth medium. The cells were resuspended in 30 ml of lysis buffer (10 mM Tris, pH 7.5; 100 mM NaCl; 1 mM DTT; 4 mM EDTA; 0.1% Triton X-100; 0.2 mM PMSF), lysed by sonication, and centrifuged for 60 min at 18,000 x g, and the lysate was passed through a 0.22-µm filter. The fusion proteins were immobilized on glutathione-Sepharose 4B beads (Amersham Pharmacia Biotech, Piscataway, NJ) at a concentration of approximately 5 mg of fusion protein per 2 ml of prewashed beads. The beads were washed twice with 10 ml of lysis buffer and twice with 10 ml of F-buffer (10 mM Tris, pH 7.5; 0.2 mM CaCl2; 0.5 mM DTT; 0.2 mM ADP or ATP, 1 mM MgCl2; 100 mM KCl). The total amount of protein on beads was quantified from a Coomassie-stained SDS-gel of beads. ADP-actin (250 µl of 3 µM) or 2.3 µM ATP-actin was incubated alone or with 9 µM GST or GST-Srv2 fragments coupled to beads for 30 s or 15 min at 25°C. The samples were centrifuged for 5 min at 13,000 x g to pellet the beads and any bound proteins. The amount of actin present in the supernatant was then examined on Coomassie-stained 12% SDS gels. In the cofilin competition assay, GST-Srv2253-526 coupled to glutathione-Sepharose 4B beads was preincubated with ADP-actin in a volume of 200 µl. Cofilin was then added to the reaction mix to yield final concentrations of 0, 4.5, 9, 18, 28, and 37 µM cofilin, 3 µM actin, and 9 µM Srv2253-526. The reactions were incubated at 20°C for 15 min, and the amount of actin in the supernatants was analyzed as above. The assays were carried out in following buffer conditions: 10 mM Tris, pH 7.5; 0.2 mM CaCl2; 0.5 mM DTT; 0.2 mM ADP or ATP, 1 mM MgCl2; 100 mM KCl.
Actin Filament Elongation Assays
Actin filament elongation assays were performed as described (Moseley et al., 2003
). Actin monomers were prepared by gel filtration using a Sephacryl S-200 column equilibrated with G-buffer (10 mM Tris, pH 8.0; 0.2 mM ATP; 0.2 mM CaCl2; 0.2 mM DTT). Actin monomers (40 µl, 0.5 or 3 µM final; 10% pyrene labeled) were preincubated for 2 min with 10 µL HEK buffer (20 mM HEPES, pH 7.5; 1 mM EDTA; 50 mM KCl) or premixed proteins (profilin and/or Srv2) in HEK buffer. Preformed actin filaments (45 µl, 1 µM final) were mixed with 5 µl HEK buffer alone or capping protein in HEK buffer. The actin filaments were sheared by five passages through a 27-gauge needle and syringe. Sheared filaments (20 µl, 333 nM final) were immediately added to actin monomers in F-buffer to initiate elongation. Pyrene fluorescence was monitored at excitation 365 nm and emission 407 nm in a fluorescence spectrophotometer (Photon Technology International, Lawrenceville, NJ). The relative rates of elongation were determined from the slopes of the curves during the early phase of polymerization.
Microscopic Analysis of Yeast Cells
Yeast cells were labeled with rhodamine-conjugated phalloidin after being grown to log phase, fixed for 10 min in 70% ethanol, and processed for fluorescence microscopy (Dewar et al., 2002
). Fluorescence images were acquired from a Zeiss E600 microscope (Thornwood, NY) equipped with Hammamatsu Orca ER CCD camera (Bridgewater, NJ) running Open Lab software (Improvision, Lexington, MA).
CD Spectroscopy
CD measurements were recorded with a Jasco J-700 spectropolarimeter equipped with a microcomputer and a Jasco PTC-348WI thermostat. Spectra were collected with a scan speed of 20 nm/min, step resolution of 0.1 nm, bandwidth of 1.0 nm, sensitivity of 100 millidegrees, and with a response time of 0.25 s. Each spectrum was the average of at least five scans. Far UV CD spectra were recorded at a protein concentration of 4 µM in 5 mM Tris, pH 7.5, and 20 mM UV-free NaCl (Sigma-Aldrich) with a 2-mm pathlength optical cell.
Miscellaneous
Protein concentrations were determined with a Hewlett Packard 8452A diode array spectrophotometer (Palo Alto, CA) by using the calculated extinction coefficients for S. cerevisiae Srv2253-526 and Srv2369-526 constructs (
280 = 10,810 M-1 cm-1) and for actin (
290-320 = 26,600 M-1 cm-1). Where noted (e.g., glutathione beads in pull-down assays), protein concentrations were estimated from Coomassie-stained SDS gels. Fluorescence-monitored urea denaturation assays were performed as described (Lappalainen et al., 1997
).
| RESULTS |
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4, and MIM (Missing In Metastasis), thereby providing a method to determine the affinities of these proteins for actin monomers (Carlier et al., 1997
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In contrast, addition of Srv2253-526 to ATP-actin monomers did not affect NBD-actin fluorescence, suggesting that Srv2253-526 either does not bind ATP-actin with a detectable affinity or that the binding to ATP-actin monomers does not induce a change in the NBD-fluorescence. We thus carried out a competition assay to examine the affinity of Srv2253-526 for ATP-actin. In these experiments we examined the ability of Srv2253-526 to displace another actin monomer binding protein, MIM (Missing In Metastasis), from actin monomers. The C-terminal half of mouse MIM binds ATP-G-actin with high affinity (Kd = 0.06 µM) and when bound induces a 20-25% quenching of the NBD-actin fluorescence (Mattila et al., 2003
). Addition of Srv2253-526 to MIM-CT/ATP-G-actin complexes resulted in an increase in the fluorescence. This fluorescence increase showed saturating behavior, which enabled us to calculate the affinity of Srv2253-526 for ATP-G-actin (Kd = 1.9 µM; Figure 3A). The assays were carried out under physiological ionic conditions (100 mM KCl, pH 8.0).
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The preference of Srv2 for ADP-G-actin over ATP-G-actin was confirmed by using an actin depletion pull-down assay. These assays were carried out with 2.3 or 3 µM ATP- or ADP-actin monomers, respectively. Because a significant proportion of ATP-actin is expected to polymerize under physiological ionic conditions after prolonged incubation, the assay was carried out using both 30-s and 15-min incubation times after the addition of monomeric actin and salt on Srv2-glutathione beads. In both cases the results were essentially the same, indicating that actin polymerization does not have a significant effect on the results of this assay. GST-Srv2253-526 coupled to the glutathione-Sepharose beads efficiently depleted ADP-actin from the supernatant fraction, whereas it did not have detectable effect on the level of ATP-actin in the supernatant (Figure 3B). Together with fluorometric NBD-actin assays, these data show that Srv2 binds ADP-G-actin with very high affinity, whereas it interacts with ATP-G-actin with only a modest affinity. Consistent with previous reports using intact CAP (Moriyama and Yahara, 2002
; Balcer et al., 2003
), we found that Srv2253-526 had unappreciable affinity for F-actin in cosedimentation assays (Supplementary Figure S1).
Srv2 Directly Competes with Cofilin for Binding to Actin Monomers
Srv2/CAPs promote actin dynamics by recycling ADF/cofilin for new rounds of actin filament depolymerization and recycling G-actin for new rounds of polymerization (Moriyama and Yahara, 2002
; Balcer et al., 2003
; Bertling et al., 2004
). To understand the mechanism by which Srv2 recycles ADF/cofilin, it was important to test whether these two actin monomer-binding proteins compete with each other in binding to ADP-G-actin. Because both yeast Srv2 and cofilin induce a similar increase in the fluorescence of NBD-actin monomers, the possible Srv2/cofilin competition for actin binding could not be examined by an assay similar to the one described above for Srv2 and MIM proteins. Therefore we used an actin depletion pull-down assay for this purpose. GST-Srv2253-526-coupled glutathione-Sepharose beads were incubated with ADP-actin monomers and variable concentrations of yeast cofilin. The beads were sedimented by centrifugation and the amount of actin left in the supernatant was quantified on an SDS gel. In the absence of cofilin, GST-Srv2253-526 efficiently decreased the amount of ADP-G-actin in the supernatant. However, addition of soluble cofilin to the reactions decreased the amount of actin monomers sequestered by GST-Srv2253-526 (Figure 2D). These data show that yeast cofilin and Srv2 directly compete with each other for binding to actin monomers.
Srv2 Blocks the Addition of Actin Monomers to Filament Barbed Ends
Actin monomer-binding proteins interact with G-actin in distinct ways and can thereby block monomer addition specifically at pointed ends of filaments (e.g., profilin), barbed ends of filaments (e.g., DNAse I), or both ends (e.g., thymosins and twinfilins). To better characterize the Srv2-G-actin interaction, we measured rates of addition of Srv2253-526-bound actin monomers to barbed and pointed ends of preformed actin filaments (Figure 4). Sheered actin filaments were used, and the concentration of ends was constant in these reactions. In the presence of 3 µM monomers, a concentration well above the pointed and barbed end critical concentrations (Pollard, 1986
), elongation occurs at both ends of filaments. Addition of S. cerevisiae profilin to these reactions decreased the rate of elongation modestly, by 15-20%, consistent with profilin restricting elongation to the faster-growing barbed ends. In contrast, addition of S. cerevisiae capping protein decreased the rate of elongation by 80-85%, consistent with capping barbed ends and restricting elongation to the slower-growing pointed ends. Addition of Srv2253-526 decreased the rate of elongation 80-85% (Figure 4, A and B), suggesting that Srv2253-526 inhibits barbed end growth but allows pointed end growth. Testing a range of Srv2253-526 and capping protein concentrations showed that their effects both saturate at 80-85% inhibition.
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To test more directly the effects of profilin, capping protein, and Srv2 specifically on barbed end growth, we measured filament elongation in the presence of 0.5 µM actin monomers. These conditions restrict growth to the barbed end, because the actin monomer concentration is below the pointed end critical concentration (Moseley et al., 2003
). As expected, profilin had no effect on rate of elongation and capping protein abolished all elongation (Figure 4, C and D). Srv2253-526 abolished all elongation, indicating that Srv2 blocks monomer addition to barbed ends. A similar inhibitory activity was observed using the shorter Srv2369-526 fragment (Figure 4E), but required higher Srv2 concentrations than with Srv2253-526, consistent with the weaker affinity of this construct for G-actin. We then tested the ability of profilin to relieve inhibition of barbed end addition by Srv2253-526. In reactions containing filament seeds, 10 µM Srv2253-526, and either 0.5 µM or 3 µM actin monomers, addition of 10-30 µM profilin increased the rate of elongation (Figure 4, A-D). Thus, Srv2253-526 inhibits monomer addition at barbed ends, and profilin can partially relieve this inhibition, suggesting a handoff of ATP-actin monomers from Srv2 to profilin.
Identification of the Actin-binding Site on Srv2
To map the actin-binding site on Srv2, we first compared the affinities of Srv2253-526 construct and a shorter "
-strand domain construct," Srv2369-526 (Figure 1A), for ADP-G-actin. This shorter construct includes the last 160 residues of Srv2, which previous deletion studies suggested contain the full actin-binding affinity of Srv2 (reviewed in Hubberstey and Mottillo, 2002
). Srv2369-526 induced a 50-75% increase in the fluorescence of NBD-ADP-actin, from which we could calculate its affinity for actin monomers. Interestingly, these data revealed that the shorter Srv2369-526 fragment has
75-fold weaker affinity for ADP-G-actin (Kd = 1.48 µM) compared with the longer construct Srv2253-526 (Kd = 0.018 µM; Figure 2, A and B). It is important to note that Srv2(253-526) and Srv2(369-526) fragments show overall stability similar to each other. In the fluorescence-monitored urea denaturation assay, the behavior of both fragments was consistent with a simple two-state unfolding transition and both fragments showed a midpoint for the transition at approximately 4 M urea (see Figure 9).
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To assess the possibility that there might be two independent actin-binding sites in Srv2, we tested whether the N-terminal half of this protein, Srv21-259, or the fragment containing the proline-rich regions and WH2 domain, Srv2253-373, could bind actin (schematic and purified proteins in Figure 1). Neither of these fragments provided detectable signal with ADP-actin in an NBD assay, suggesting that either they do not bind actin or that the binding does not induce a signal in NBD fluorescence. To distinguish between these two alternatives, we next carried out a supernatant depletion pull-down assay. GSTSrv21-259 and GST-Srv2253-373 coupled to the glutathione-Sepharose beads were unable to bind detectable amounts of ADP-G-actin, while Srv2253-526 efficiently depleted actin from the supernatant (Figure 2C).
Identification of Residues in the C-terminal Region of Srv2 Required for Function In Vivo
To identify residues in the C-terminus of Srv2 that mediate actin binding, we generated 12 mutant alleles, each with 1-2 charge-to-alanine substitutions at evolutionarily conserved, solvent-exposed residues (see alignment in Figure 5 and Table 1). The mutations in 10 alleles (srv2-103 to srv2-112) can be modeled on the recently solved crystal structure of Srv2369-526 (Figure 6). The structure is a tightly interlaced homo-dimer with each half comprised of
-sheets and connecting loops arranged into a helix. Mutations in four alleles reside on surfaces of the
-sheets (Figure 2, srv2-103, srv2-104, srv2-107, and srv2-111), whereas mutations in six other alleles reside in connecting loops (srv2-105, srv2-106, srv2-108, srv2-109, srv2-110, and srv2-112). Two additional alleles (srv2-101 and srv2-102) introduce mutations N-terminal to Srv2369-526 and thus are not shown in Figure 6. srv2-101 is of particular interest, because it introduces alanine substitutions at highly conserved residues in the WH2 domain, and the same mutation disrupts interactions with ATP-G-actin in other WH2 domains (Van Troys et al., 1996
; Vaduva et al., 1999
; Yamaguchi et al., 2000
; Mattila et al., 2003
; Hertzog et al., 2004
).
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We analyzed the srv2 allele collection for defects in vivo similar to those caused by srv2
null mutants or truncations of the Srv2 C-terminus. These phenotypes include 1) severe depolarization of cortical actin patches and reduction of actin cable staining, 2) impaired growth at 37°C, and 3) a prevalence of enlarged and rounded mother cells and some multibudded cells (i.e., indicative of cell polarity defects). For these analyses, an srv2 null yeast strain was transformed with low copy plasmids carrying wild-type or mutant alleles of the SRV2 gene, expressed under the control of its own promoter. Cells were compared for growth at 25 and 37°C (Figure 7). The srv2 null cells grow poorly at 37°C, but are rescued by the wild-type SRV2 plasmid, and 9 of the 12 srv2 alleles rescued growth at 37°C similar to wild-type SRV2. These alleles caused no detectable phenotypes in actin organization or cell morphology (unpublished data). In contrast, the remaining three srv2 alleles (srv2-104, srv2-108, and srv2-109) each failed to rescue cell growth of the srv2 null strain at 37°C (Figure 7) and showed dramatic defects in actin organization and cell morphology (Figure 8). In each of these mutants, polarization of the actin cytoskeleton was severely disrupted, similar to the srv2 null mutation, but there were noticeable differences in the cellular morphologies. srv2-104 closely resembled the srv2
cell morphology, with enlarged mother cells, small daughter cells, and a frequent occurrence of multibudded cells (
5-10% of cells). srv2-108 and srv2-109 mother cells also were enlarged, but had a high abundance of daughter cells with elongated buds, and the multibudded phenotype was much less frequent.
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Residues Required for Srv2/CAP Function In Vivo Mediate Actin Binding In Vitro
Next, we sought to determine whether the in vivo defects observed above for specific srv2 alleles might be caused by defects in actin binding. To address this, we analyzed the ADP-G-actin binding affinities of select srv2 alleles introduced into the Srv2253-526 fragment. Three alleles (Srv2-104, Srv2-108, and Srv2-109) were chosen because they cause severe defects in actin organization and temperature sensitive growth (Figures 7 and 8). A fourth mutant, srv2-101, was selected because the residues mutated (Lys325 and Lys326) reside in the WH2 domain and are critical for G-actin binding in other WH2 domains such as thymosin-
4 (Van Troys et al., 1996
). To compare the stability and structure of the purified Srv2253-526 and Srv2-104253-526, Srv2-108253-526, and Srv2-109253-526 proteins, we carried out a fluorescence-monitored urea denaturation assay and measured the far UV CD spectra (Figure 9). The urea denaturation assay showed that the mutants unfolded at a slightly lower urea concentration (2.8-3.5 M) than the wild-type protein (4 M). However, the far UV CD spectra were nearly identical, indicating that the compositions of secondary structure elements in these proteins are very similar.
The purified mutant Srv2253-526 proteins, Srv2-104, Srv2-108, and Srv2-109, each showed reduced affinity for ADPG-actin (3.5-7-fold) compared with wild-type protein (Figure 10A). However, the Srv2-101253-526 construct, in which the WH2 domain was inactivated, bound ADP-G-actin with an affinity similar to the wild-type Srv2253-526. We also selected one of these mutants, Srv2-104, to examine its effect to ADP-G-actin binding in the context of the shorter actin-binding construct, Srv2-104369-526. This mutation caused >2-fold decrease in the affinity for ADP-G-actin, confirming that these residues are important for actin binding in Srv2 (Figure 10B). These data are summarized in Table 3.
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Although Srv2 binds to ATP-G-actin only with a modest affinity, we also tested the effects of two selected mutants (Srv2-101 and Srv2-104) for ATP-G-actin binding. The data from a competition binding assay with MIM showed that Srv2-104253-526 binds ATP-G-actin with an affinity very similar to wild-type Srv2253-526, whereas Srv2-101253-526 shows slightly reduced affinity for ATPG-actin (Figure 10C). These data indicate that, although the WH2 domain does not contribute to ADP-G-actin binding in Srv2, it is involved to some degree in ATP-G-actin binding. The data show that different regions of Srv2 can be involved in binding ATP- and ADP-actin.
Finally, we addressed the possible effects of these mutations on formation of the Srv2/CAP high-molecular-weight (HMW) complex. Native Srv2/CAP exists in a 15-16S complex in cell extracts, and purified Srv2/CAP oligomerizes via interactions within and between its N- and C-termini (Hubberstey et al., 1996
; Zelicof et al., 1996
; Yu et al., 1999
; Balcer et al., 2003
). Because assembly into a HMW complex may be an important requirement for Srv2/CAP function in vivo, we considered the possibility that some of the point mutations with strong phenotypes might interfere with N- and C-terminal interactions and thereby destabilize the complex. To test this, we compared the migration of Srv2 in cell extracts from wild-type, srv2-108, and srv2-109 strains fractionated by sedimentation velocity on sucrose gradients (by immunoblotting fractions for Srv2). However, no differences in migration of the wild-type and mutant Srv2 complexes were observed (Quintero-Monzon and Goode, unpublished data). Therefore, the mutations srv2-108 and srv2-109 primarily affect actin binding, and HMW complex formation is not grossly impaired. These data show that formation of the HMW complex does not require high-affinity actin binding, which agrees with observation that purified full-length CAP oligomerizes as a hexamer in the absence of actin (Ksiazek et al., 2003
).
| DISCUSSION |
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600 kDa), estimated to be comprised of six Srv2 and six actin molecules (Balcer et al., 2003
Here, we have defined the properties of the yeast Srv2/CAP-actin interaction, providing new insights into how Srv2/CAP proteins promote actin turnover. We show that Srv2/CAP binds with strong preference to ADP-actin monomers compared with ATP-actin monomers and directly competes with cofilin for binding to ADP-actin. This explains how Srv2 can recycle ADP-G-actin from a cofilin-bound state and release monomers after they have undergone nucleotide exchange. Srv2 also blocks ATP-actin monomer addition to barbed ends of filaments, suggesting that in vivo Srv2 acts as a middleman and there is a handoff to other actin monomer binding proteins with a higher affinity for ATP-G-actin such as profilin. Consistent with this idea, we show that profilin partially restores barbed end growth in the presence of Srv2 in vitro. We also find that the actin-binding domain of Srv2 is much more extensive than previously suggested. The recently solved
-sheet structure Srv2369-526 is sufficient to bind actin monomers, but it does so with low affinity, and high-affinity binding requires additional flanking sequences (aa 253-368). Our mutational analyses map actin binding activity in the
-sheet domain to several evolutionarily conserved surfaces. Finally, by analyzing the growth, morphology, and actin organization in cells expressing these mutants, we demonstrate that a strong interaction between Srv2/CAP and ADP-actin monomers is required for Srv2/CAP function in vivo.
The Biochemical Nature of the Srv2-Actin Interaction
Our data show that the boundaries of the Srv2/CAP actin-binding domain extend beyond those previously reported, which were suggested to be contained within the
-sheet region (aa 369-526). This fragment alone has
75-fold lower ADP-actin binding than a larger C-terminal fragment (aa 253-526) that includes a WH2 domain and other sequences. Nevertheless, within the larger C-terminal fragment (aa 253-526), the
-sheet structure is absolutely critical for actin binding, because the adjacent sequences alone (aa 253-373) lack detectable actin-binding affinity. From these analyses, it is still unclear how the adjacent sequences contribute to high-affinity ADP-actin binding without showing any actin binding on their own. We considered that they might alter the oligomerization state of the C-terminus, thereby strengthening actin-binding affinity indirectly. However, analytical gel filtration analysis showed that both the shorter (369-526) and longer (253-526) Srv2 fragments dimerize (Quintero-Monzon and Goode, unpublished data). This leaves at least two open possibilities. First, the 253-373 sequence may in fact bind directly to actin, but only in the structural context of the
-sheet region (i.e., they fold together to form a high-affinity actin-binding site). Second, the
-sheet may bind to actin first, altering its conformation to expose a cryptic second actin-binding site within the 253-373 sequence. In either case, future mutational analyses in this region should help define how these sequences contribute to strong actin-binding affinity.
Our data also implicate specific subdomains of actin in binding Srv2/CAP. The ability of Srv2 to compete directly with cofilin for binding ADP-actin monomers suggests that they have at least partially overlapping binding sites on actin. Consistent with this idea, the binding sites for Srv2/CAP and cofilin are suggested to reside in subdomains 1 and 3 of actin (Rodal et al., 1999
; Rommelaere et al., 2003
). Also in support of this view, we have found that mutations in this region of actin are suppressed by overexpression of Srv2 in vivo (Hendries and Goode, unpublished observations). However, although the Srv2-actin and cofilin-actin interactions may be overlapping, they must also be unique, which is supported by two observations. First, cofilin strongly inhibits nucleotide exchange on actin monomers, whereas Srv2/CAP does not (Moriyama and Yahara, 2002
; Balcer et al., 2003
). Second, cofilin-bound actin monomers are free to assemble onto barbed ends of actin filaments, whereas Srv2-bound actin monomers are blocked (Figure 4). Thus, Srv2/CAP and cofilin must make distinct contacts on actin. It is likely that Srv2/CAP makes specific contacts at the pointed end of the actin monomer (subdomains II and IV), similar to thymosins (Hertzog et al., 2004
), to explain its inhibition of barbed end growth. However, the WH2 domain of Srv2 is not required for these interactions, because Srv2369-526, which lacks the WH2 domain, also inhibits barbed end growth (Figure 4E).
One unexpected result in our study was the lack of a significant contribution made to actin binding by the WH2 domain of Srv2/CAP. WH2 domains are signature actin-binding motifs that show a strong preference for binding ATP-actin monomers (Paunola et al., 2002
). Further, all CAP family members, spanning the animal, plant, and fungal kingdoms, contain a WH2 domain at this position in the C-terminus (Figure 1A), suggesting that this element is important for function. However, our mutation at the residues that in other WH2 domains are critical for actin-binding caused no significant effect on the ADP-actin binding affinity, only a minor change in ATP-actin binding affinity, and no detectable effect on Srv2/CAP function in vivo. Thus, it remains unclear what function is served by the WH2 domain in Srv2/CAP, other than modestly facilitating ATP-G-actin binding. One possibility is that in Srv2/CAP proteins this domain has additional structural roles. It is interesting to note that CAP family members all contain a small insertion of 3-4 residues located near the key actin-binding site at the N-terminal
-helix in WH2 domains (Hertzog et al., 2004
). This insertion is not found in other WH2 domain-containing proteins (see Paunola et al., 2002
) and therefore, could tailor the WH2 domain for CAP-specific functions, including possibly a structural role.
Our data also lend important insights into the molecular arrangement of the Srv2/CAP complex. A number of previous studies have shown that Srv2/CAP exists in a HMW complex in cell extracts and that purified Srv2/CAP proteins oligomerize via interactions within and between their N- and C-termini. More recently, native Srv2 complex (
600 kDa) was isolated from S. cerevisiae and found to be comprised of only two proteins, actin and Srv2, present in a 1:1 M ratio (Balcer et al., 2003
). It was suggested that the complex contains six actin monomers and six Srv2 molecules. How these 12 molecules are organized into a macromolecular complex (involving intra- and intermolecular interactions between Srv2 domains and between Srv2 and G-actin) presents a challenging puzzle. We note that in the crystallized C-terminal
-sheet (see Figure 6), the two Srv2 molecules face in opposite directions with 180° symmetry. We have defined three well-separated surfaces on this structure that are important for ADP-actin binding (disrupted by srv2-104, srv2-108, and srv2-109). Interestingly, the residues mutated in each of these sites (E385, D461, K462, K472, E473) point in the same direction on one Srv2 molecule in the dimer, raising the possibility that only one face of the structure mediates actin binding. This predicted actin-binding face corresponds to the "back" side of the Srv2 molecule on the left in Figure 6 (colored in yellow) and the "front" side of the Srv2 molecule on the right (colored in aqua). These data provide a conceptual framework for future studies aimed at modeling the Srv2/CAP-actin interaction at higher resolution and orienting these interactions within the HMW complex.
Srv2/CAP Mechanism and Cellular Function
As discussed above, a key cellular function of Srv2/CAP is to promote cofilin-dependent actin turnover. The mechanism is proposed to involve Srv2/CAP competing with cofilin for binding to ADP-actin monomers, thus recycling cofilin for new rounds of filament disassembly. This mechanism requires that Srv2/CAP be able to bind with high affinity to ADP-actin, which we have demonstrated here. Previous studies have shown that cofilins bind ADP-actin monomers with high affinity (Kd = 0.02-0.1 µM) (Carlier et al., 1997
; Blanchoin and Pollard, 1998
; Vartiainen et al., 2002
). Our data show that Srv2253-269 fragment binds to ADP-actin at least as strongly as cofilin. Additional contributions to this competition mechanism may come from the N-terminus of Srv2/CAP, which associates directly with cofilin in vitro (Moriyama and Yahara, 2002
). One exciting possibility is that binding of the N-terminus of CAP to cofilin might weaken cofilin's affinity for ADP-actin. Thus, the N- and C-termini of Srv2/CAP may work together to rapidly displace cofilin from ADP-actin monomers. Consistent with this idea, intact yeast Srv2 complex converts cofilin-bound ADP-actin monomers to ATP-actin at below 1:100 M stoichiometries, suggesting a catalytic activity (Balcer et al., 2003
). Importantly, we have demonstrated that the high-affinity Srv2-ADP-actin interaction is required for its cellular function, because there is a close correlation between the in vitro defects in actin binding for srv2-104, srv2-108, and srv2-109 and the defects they cause in actin organization and cell morphology in vivo.
In the next step of the mechanism, Srv2-bound ADP-actin monomers undergo rapid exchange of nucleotide (ATP for ADP; Moriyama and Yahara, 2002
; Balcer et al., 2003
). We propose that there is a subsequent "handoff" of ATP-actin monomers from Srv2/CAP to other actin monomer binding proteins such as profilin, which facilitate barbed end actin polymerization. This step is necessary, because Srv2/CAP-bound actin monomers are blocked from associating with barbed ends of filaments. Further, the Srv2/CAP complex is tethered to actin filaments through its interactions with Abp1 and thus is not available to chaperone actin monomers to filament ends. It remains to be determined exactly how the proposed handoff works, but our data offer a feasible model. We show that Srv2/CAP has relatively weak affinity for ATP-actin monomers, which is consistent with Srv2/CAP releasing actin after nucleotide exchange has occurred, presumably to be bound by proteins with higher affinity for ATP-actin monomers, such as profilin or WASp (Vinson et al., 1998
; Marchand et al., 2000
). Consistent with this possibility, we find that profilin partially relieves the inhibition of barbed end assembly by CAP (Figure 4). Profilin and Srv2 also are reported to physically interact (Drees et al., 2000), which might further facilitate a monomer handoff. These events would lead to regeneration of the ATP-actin monomer pool available for new rounds of polymerization and prime Srv2/CAP for subsequent rounds of recycling cofilin and actin.
| ACKNOWLEDGMENTS |
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| Footnotes |
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The online version of this article contains supplementary material accessible through http://www.molbiolcell.org. ![]()
These authors contributed equally to this work. ![]()
|| Corresponding author. E-mail address: goode{at}brandeis.edu.
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