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Vol. 15, Issue 7, 3031-3041, July 2004
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* Laboratoire de Transport et Compartimentation Intracellulaire;
Laboratoire de RMN et Bioinformatique Structurales;
Laboratoire de BioCristallographie, Institut de Biologie et Chimie des Protéines, UMR5086 Centre National de la Recherche Scientifique, Institut Fédératif de Recherche 128 BioSciences Lyon-Gerland, 69367 Lyon, France; and
Laboratoire Modèles Levure de Pathologies Humaines, IBMC, FRE2375 Centre National de la Recherche Scientifique, 67084 Strasbourg, France
Submitted November 7, 2003;
Revised March 11, 2004;
Accepted April 9, 2004
Monitoring Editor: Jennifer Lippincott-Schwartz
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ABSTRACT |
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 TOP ABSTRACT INTRODUCTIONMATERIALS AND METHODSRESULTSDISCUSSIONACKNOWLEDGMENTSREFERENCES |
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INTRODUCTION |
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TOPABSTRACTINTRODUCTIONMATERIALS AND METHODSRESULTSDISCUSSIONACKNOWLEDGMENTSREFERENCES |
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). Mature MVB fuses with the vacuole/lysosome releasing internal vesicles into its lumen and thereby exposing them to the activity of hydrolytic enzymes (Futter et al., 1996; Odorizzi et al., 1998). This mechanism allows a subset of endosomal membrane proteins to be sorted to the lumen of the lysosome/vacuole, whereas others are either selectively recycled back to the Golgi or to the plasma membrane, or they end up on the lysosomal/vacuolar membrane (Pelham, 2002). In yeast, the MVB pathway is crucial for the regulated turnover of pheromone receptors and of some permeases (Odorizzi et al., 1998). Further, biosynthetic transmembrane proteins such as carboxypeptidase S (Cps1p) and Phm5p follow this route to reach their final destination, the vacuolar lumen (Odorizzi et al., 1998; Reggiori and Pelham, 2001; Epple et al., 2003).
Ubiquitination has been implicated as an endosomal-sorting signal. Cps1p and Phm5p ubiquitination is essential to target them into the vacuolar lumen after sorting at the MVB (Katzmann et al., 2001; Reggiori and Pelham, 2001). Potential cargo receptors responsible for recognition and recruitment of ubiquitinated cargo into MVB vesicles are class E Vps (vacuolar protein sorting) proteins. Class E mutants accumulate cargo destined for the vacuole in an exaggerated endosomal structure and all (currently identified) class E proteins are required for sorting at the MVB (Conibear and Stevens, 1998). Vps23p, a class E protein of the ESCRT-I complex (endosomal-sorting complex required for transport), carries an ubiquitin-conjugating (UBC)-like domain and interacts directly with ubiquitin in vitro and with ubiquitinated Cps1p in vivo (Katzmann et al., 2001). By binding to ubiquitinated cargo and then activating ESCRT-II, which in turn acts upstream of ESCRT-III, ESCRT-I is the first effector of a coordinated cascade necessary for ubiquitin-dependent protein sorting at the MVB (Babst et al., 2002a, 2002b). Two other class E proteins, Vps27p and Hse1p, contain ubiquitin-interacting motifs (UIMs) and bind ubiquitin in vitro (Bilodeau et al., 2002; Polo et al., 2002; Raiborg et al., 2002; Shih et al., 2002). Mutations in the UIMs of Vps27p and Hse1p cause defects in sorting of Cps1p and Ste2p, suggesting that a Vps27p/Hse1p complex is a sorting receptor for ubiquitinated proteins at the MVB. Vps27p binds PtdIns(3)P via its FYVE domain (Burd and Emr, 1998; Gary et al., 1998; Gaullier et al., 1998; Wishart et al., 2001; Burda et al., 2002). PtdIns(3)P is found on the cytoplasmic side of endosomes, of internal vesicles of the MVB and of the vacuole (Gillooly et al., 2000). Vps27p binds PtdIns(3)P and ubiquitin and therefore constitutes a direct link between these two sorting signals. Accordingly, recent data showed that Vps27p initiates the MVB sorting reaction and directs the recruitment of ubiquitinated cargo into MVB vesicles in association with ESCRT-I (Bilodeau et al., 2003; Katzmann et al., 2003).
The Ent1 to Ent5 proteins are ENTH (epsin NH2-terminal homology) domain proteins (Kay et al., 1999; Wendland et al., 1999; Duncan et al., 2002). The ENTH domain promotes membrane recruitment by binding phosphoinositides (De Camilli et al., 2002). We have recently reported that Ent3p is a specific PtdIns(3,5)P2 effector involved in protein sorting at the MVB in yeast (Friant et al., 2003). Analysis of yeast mutants unable to synthesize PtdIns(3,5)P2, such as fab1, vac7, and vac14, revealed that this phospholipid is also required for sorting ubiquitinated cargoes into the MVB (Bonangelino et al., 1997; Odorizzi et al., 1998; Reggiori and Pelham, 2001; Dove et al., 2002).
In this study we investigate the role of Ent5p that also specifically binds to PtdIns(3,5)P2. It is associated with the ubiquitin-binding protein Vps27p and together with Ent3p is required for ubiquitin-dependent protein sorting into the MVB.
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MATERIALS AND METHODS |
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TOPABSTRACTINTRODUCTIONMATERIALS AND METHODSRESULTSDISCUSSIONACKNOWLEDGMENTSREFERENCES |
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, vsp36, vps37, PLY1020 (WT), PLY2857 (Mat
pep4-3 ura3-52 leu2-3 his4-519 ade6 vps27::KanMX), PLY2784 (Mat pep4-3 ura3-52 leu2-3 his4-519 ade6 vps27::KanMX hse1::KanMX), vps24vps27 (Mata ura3 leu2 vps24::KanMX vps27::KanMX), FY833 (WT), and FY833-fab11 (fab1).
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Endocytosis Assay and Quinacrine Staining
Lucifer yellow (LY) uptake and quinacrine assays were performed as previously described (Friant et al., 2003).
Lipid Dot Blot Assay
Lipid solutions containing 100 pmol/µl phospholipids dissolved in CHCl3/MetOH/HCl (50:50:0.1 vol/vol) were spotted on a nitrocellulose membrane and allowed to dry for 1 h. The membrane was blocked in 3% fatty acid free BSA in TBS-Tween for 1 h and incubated overnight with the GST-ENTH domain of Ent5p (at 0.3 µg/ml). After washing, protein binding was revealed with anti-GST.
Liposome Recruitment Assay
Recruitment reactions were performed as previously described (Friant et al., 2003). The FYVE domain was a kind gift of M.A. Lemmon.
Subcellular Fractionation, Western Blot, Gel filtration, Coimmunoprecipitation, and Membrane Fractionation
Subcellular fractionation was carried out as described in Bonangelino et al. (1997). Mouse monoclonal anti-GFP (Roche, Nutley, NJ), anti-PGK, and anti-Vph1p antibodies (Molecular Probes, Eugene, OR), anti-HA (Roche Diagnostics Corp.) and anti-GST (Sigma-Aldrich, St. Louis, MO), rabbit anti-Emp47 (kind gift from R. Duden), and anti-Ent3 antibodies (Friant et al., 2003) were used. For detection of His6-tagged proteins the SuperSignal West HisProbe Kit from Pierce (Rockford, IL) was used. For gel filtration, cytosol was prepared by glass bead lysis in PBS containing 0.25 M sorbitol, protease inhibitor cocktail (Sigma), and PMSF, followed by a 10-min spin at 13 000 rpm and a 30-min spin at 100,000 x g. Five to 9 mg protein was injected on a Superose 6 column (Pharmacia, Arlington Heights, IL), and 10 µg protein/fraction was analyzed by Western blot. Yeast cytosol or fractions from gel filtration were adjusted to identical protein amounts and immunoprecipitated with Ent3p antibodies and then subjected to anti-HA or anti-GFP Western blotting. Membrane fractionations on sucrose density gradients were carried out as described (Holthuis et al., 1998). Mouse Pep12p and Vps10p antibodies from Molecular Probes were used for detection of endosomal fractions.
Pull-down Experiments and Ubiquitin-binding Assays
GST-pull down experiments were carried out as described (Cosson and Letourneur, 1994), but yeast cells were lysed in PBS, 10 mM EDTA, 0.5% Triton, protease inhibitor cocktail, and PMSF. For binding to ubiquitin-sepharose, 50 µl ubiquitin-sepharose (Sigma) was incubated with 20 µg recombinant protein for 4 h, and washed in TBST as described (Aguilar et al., 2003).
Immunoprecipitations and Metabolic Labeling
Metabolic labeling, pulse-chase analyses, and immunoprecipitations were performed as previously described, by using mouse anti-ALP (Molecular Probes) and rat anti-HA antibodies (Sigma) and protein A-Sepharose (Amersham Biosciences Europe GmbH, Freiburg, Germany; Friant et al., 2003). For immunoprecipitation of ubiquitinated proteins, cells overexpressing ubiquitin (necessary to allow detection of a signal) and expressing GFP-Cps1 were grown to an OD600 = 0.5, precipitated in 10% TCA, washed in acetone, resuspended in 200 µl TE, protease inhibitor cocktail, PMSF, and 5 mM NEM, and vortexed for 5 min with glass beads. Thorner buffer, 200 µl, was added and broken cells were incubated at 50°C for 10 min. After centrifugation for 10 min at 13,000 rpm, 100 µl of supernatant was subjected to immunoprecipitation with ant-GFP antibody (Roche). Immunoprecipitated proteins were revealed with anti-ubiquitin antibody (Zymed, San Francisco, CA).
Microscopy
Living cells expressing GFP-Cps1, GFP-Phm5, GFP-DPAP B, or GFP-Ent5 were harvested at an OD600 of 0.5 and resuspended in PBS before visualization. In vivo labeling with FM4-64 was done as described (Vida and Emr, 1995). Visualization of cells was performed on a fluorescence Zeiss Axioplan II (Thornwood, NY) or Nikon Optiphot-2 microscope (Melville, NY) equipped with FITC and rhodamine filters, and Nomarski optics. Images were captured with a CoolSnap FX Roper Scientific (Tuscon, AZ) or a Photonic Science digital camera (Turnbridge Wells, UK).
Computer Analysis
Sequence alignments were done using the ClustalW program (Thompson et al., 1994) and displayed with ESPript (Gouet et al., 1999). Database searches were performed using BLAST and 
BLAST servers at NIH.
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RESULTS |
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TOPABSTRACTINTRODUCTIONMATERIALS AND METHODSRESULTSDISCUSSIONACKNOWLEDGMENTSREFERENCES |
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). The ent3 deletion mutant did not display the same phenotype as the ent3-1 mutant, suggesting that the yeast genome encoded a functional homologue. There are five different yeast ENTH domain-containing proteins named Ent1p to Ent5p (Figure 1). In contrast to Ent3p, Ent1p and Ent2p were shown to be required for endocytosis (Wendland et al., 1999). The function of Ent4p is not known, and Ent5p was recently identified as a functional homologue of Ent3p, involved in clathrin-mediated trafficking at the late Golgi (Duncan et al., 2002). The single ent3, ent4, and ent5 and the double ent3ent4 and ent4ent5 deletion strains displayed no obvious phenotype, but the double ent3ent5 mutant was cold sensitive for growth on YPD plates (unpublished data) and showed highly fragmented vacuoles (see also Figure 4, A and D, and 5A). This vacuolar phenotype had already been observed in ent3-1 mutant cells (Friant et al., 2003). These results suggested that Ent5p and Ent3p shared functions in MVB sorting, in the light of what has been previously shown for clathrin-mediated membrane trafficking (Duncan et al., 2002; Friant et al., 2003). The ENTH domain is a membrane-interacting module found in a number of proteins acting at early stages of endocytosis (De Camilli et al., 2002). We therefore asked whether the presence of Ent5p was required with Ent3p for the internalization step of endocytosis. Uptake of lucifer yellow (LY) was analyzed in ent3, ent5, and ent3ent5 mutant cells and they accumulated LY in the vacuole like wild-type cells (unpublished data). These data show that Ent5p, like its homologue Ent3p, serves a function different from the "classical" role of epsins in endocytosis.
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Ent5p-GFP Localizes to Endosomal Structures
To analyze the intracellular localization of Ent5p, we fused green-fluorescent protein (GFP) to the NH2-terminus of full-length Ent5p. This fusion protein is functional, as it complements the fragmented vacuolar phenotype of ent3ent5 mutant cells. In wild-type cells, GFP-Ent5p localized to the cytoplasm and to punctate structures, indicating association with endosomal compartments (Figure 2A). Some of the dots colocalized with the staining obtained after a short pulse with FM4-64, which visualizes endosomal structures (Figure 2B; Vida and Emr, 1995). In addition, GFP-Ent5p was introduced into class E vps mutants that accumulate enlarged prevacuolar/endosomal structures, vps27 and vps24, which affects the ESCRT-III complex (Figure 2B). In these class E vps mutants, the majority of GFP-Ent5p was localized to the class E compartment, as seen by its colocalization with FM4-64 (Figure 2B). In the vps24vps27 double mutant, GFP-Ent5p was also localized to the class E compartment (Figure 2B), thus indicating that Vps27p is not responsible the localization of Ent5p to the class E compartment of vps24 cells. The intracellular localization of GFP-Ent5p was further characterized by a differential sedimentation assay. In wild-type cells, the majority of GFP-Ent5p was membrane-associated in the fraction that pelleted at 13,000 x g (P13) that contains large organelles such as vacuoles, ER, nuclei, or structures like the cytoskeleton, and in the high-speed membrane fraction (P100) containing Golgi membranes, endosomes, and vesicles, but also for a minor part in the cytoplasmic pool (S100; Marcusson et al., 1994). A similar fractionation pattern for GFP-Ent5p was observed in the class E mutants vps23 or vps27 (unpublished data).
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The intracellular distribution of GFP-Ent5p was also analyzed by subcellular fractionation on an equilibrium sucrose density gradient. As shown in Figure 2C, GFP-Ent5p fractionated away from the vacuolar marker ALP and most closely resembled the distribution of Pep12p, the t-SNARE for a late endosomal/prevacuolar compartment and of Vps10p, the early endosomal marker (Figure 2C). All these results suggest that Ent5p is a cytosolic protein able to associate with membranes and is found predominantly on endosomal structures.
Ent5p Binds Specifically to PtdIns(3,5)P2
The ENTH domain is a phospholipid binding module (De Camilli et al., 2002). We have recently shown that the ENTH domain of Ent3p specifically binds PtdIns(3,5)P2 in vivo and in vitro (Friant et al., 2003). To determine the lipid specificity of Ent5p, liposome recruitment assays with recombinant GST-Ent5 fusions were performed. GST-Ent5 or GST-ENTH domain were cosedimented with PtdIns(3,5)P2 containing liposomes but not with liposomes containing PtdIns(3)P, PtdIns(3,4)P2, PtdIns(4,5)P2, or PtdIns(4)P (Figure 3A). In contrast, a truncation of Ent5p lacking the ENTH domain was unable to interact with any of the liposomes tested, thus demonstrating that the ability of Ent5p to bind PtdIns(3,5)P2 was dependent on its ENTH domain (unpublished data). As a control, we tested the lipid specificity of the FYVE domain of Hrs-1 in our liposome recruitment assay (Figure 3A), and the FYVE domain bound specifically to PtdIns(3)P as previously reported (Sankaran et al., 2001). As can be seen in Figures 3A and 6B, recombinant GST-Ent5 consistently appeared as a triplet. To date we are unable to discern the nature of or the modifications on the different species observed. We also performed a protein-lipid overlay assay using the ENTH domain of Ent5p. This assay confirmed the results of the liposome recruitment assay, in that the ENTH domain of Ent5p bound only to PtdIns(3,5)P2 (Figure 3B).
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To determine whether lack of PtdIns(3,5)P2 affects the intracellular localization of Ent5p, fab1 cells that are impaired in PtdIns(3,5)P2 synthesis were transformed with the GFP-Ent5p construct and analyzed by fluorescent microscopy (Figure 2A). GFP-Ent5p was completely diffuse in the cytosol of fab1 cells. This suggests that Ent5p localizes to endosomes by virtue of its binding to PtdIns(3,5)P2. Taken together, our data demonstrate that Ent5p specifically binds to PtdIns(3,5)P2 via its ENTH domain and show that Ent5p is a new PtdIns(3,5)P2 effector in yeast.
Ent5p, together with Ent3p, Is Specifically Required for Ubiquitin-dependent Sorting of Biosynthetic and Endocytic Cargoes into the MVB
It is well established that the lipid kinase Fab1p and its product PtdIns(3,5)P2 are required for the correct sorting of ubiquitinated biosynthetic and endocytic cargo proteins at the MVB (Odorizzi et al., 1998; Reggiori and Pelham, 2001; Shaw et al., 2003). Here we identified Ent5p as a new PtdIns(3,5)P2 effector in yeast, redundant with Ent3p. Both proteins are localized to endosomes, the site of MVB formation (Friant et al., 2003). We therefore asked whether Ent3p and Ent5p were also implicated in ubiquitin-dependent MVB sorting and analyzed the intracellular localization of GFP-Cps1 and GFP-Phm5, two ubiquitinated biosynthetic cargo proteins, in ent3, ent5, and ent3ent5 mutant cells (Figure 4). Precursor forms of Cps1p and Phm5p are synthesized as type II transmembrane proteins. After transit through the secretory pathway to endosomes, they are sorted into invaginating MVB vesicles, resulting in exposure of their short cytoplasmic N-terminal domain to the lumen of the vesicles. Delivery of the vesicles to the vacuolar lumen allows hydrolytic clipping of the precursors to their mature forms: the large C-terminal part is released from the transmembrane domain into the vacuolar lumen where it exerts its activity. In wild-type, ent3, and ent5 cells, expression of GFP-Cps1 or GFP-Phm5 gave rise to a clear staining of the vacuolar lumen (Figure 4A and unpublished data). In contrast, in ent3ent5 mutant cells, GFP-Cps1 and GFP-Phm5 localized to the fragmented vacuolar membrane and not to the vacuolar lumen, as shown by colocalization with the dye FM4-64 (Figure 4A). To confirm that Ent3p and Ent5p were both required for sorting of GFP-Phm5 and GFP-Cps1 at the MVB, total yeast cell extracts were analyzed by Western blotting and probed with an anti-GFP antibody (Figure 4, B and C). In wild-type, ent3, and ent5 cells, free GFP released by vacuolar enzymes after maturation of GFP-Cps1 and GFP-Phm5 were readily detected. In contrast, free GFP was absent from ent3ent5 mutant cells, suggesting that GFP-Phm5 and GFP-Cps1 had not been exposed to the activity of vacuolar proteases and therefore had not been properly sorted into the MVB pathway.
The endocytic cargo Ste2p is also ubiquitinated and this modification is requisite for its sorting into internal vesicles of the MVB as well as for its internalization at the plasma membrane (Katzmann et al., 2001; Bilodeau et al., 2002; Shih et al., 2002). To find out whether Ent3p and Ent5p were also required for the vacuolar targeting of ubiquitin-modified endocytic cargo, the intracellular localization of GFP-Ste2 was analyzed by fluorescence microscopy (Figure 4D). In wild-type cells, GFP-Ste2 was concentrated in the vacuolar lumen. In ent3ent5 mutant cells, GFP-Ste2 was mainly localized to the vacuolar membrane, with some residual staining in the vacuolar lumen, thus suggesting that the correct and efficient sorting of some endocytic cargoes also requires Ent3p and Ent5p.
To ascertain whether the sorting defect observed in ent3ent5 mutant cells was specific for transmembrane proteins sorted into internal MVB vesicles and whether sorting of proteins of the vacuolar membrane was disturbed, the intracellular localization of GFP-DPAP B (Dipeptidyl aminopeptidase B) was analyzed in these cells. DPAP B is a type II transmembrane protein that travels along the CPY pathway to the limiting membrane of the vacuole (Piper et al., 1997). In wild-type as in ent3ent5 mutant cells, GFP-DPAP B was found on vacuolar membranes (Figure 5A), indicating that this pathway functions in the absence of Ent3p and Ent5p.
We also followed the transport/processing of CPY and ALP by pulse-chase analysis. In wild-type cells, after a pulse with Met/Cys 35S label, the precursor forms of CPY (p1CPY and p2CPY) and ALP (proALP) can be detected and after chase of increasing time length, increasing amounts of mature CPY and ALP appear, resulting from the transport of the precursor forms to the vacuole. In ent3, ent5, and ent3ent5 cells, ALP and CPY were correctly processed/transported, although ent3ent5 mutant cells displayed a slight delay when compared with wild-type cells (unpublished data).
Fab1p, the PtdIns(3)P 5-kinase is required for proper vacuole acidification (Bonangelino et al., 1997). We therefore tested the acidification of the vacuole in cells lacking Ent3p and/or Ent5p by quinacrine staining. The lumen of the vacuoles of ent3, ent5, or ent3ent5 mutant cells showed wild-type staining of quinacrine, whereas in fab1 cells there is no quinacrine staining of the vacuolar lumen (unpublished data and Figure 5B).
Taken together, all these data show that the two PtdIns(3,5)P2 effectors, Ent3p and Ent5p, are specifically required for ubiquitin-dependent sorting of endocytic and biosynthetic cargo at the MVB, whereas other routes to the vacuole are not affected, and acidification of the vacuole is normal.
Ent3p and Ent5p Do Not Directly Bind to Ubiquitin
Both Ent3p and Ent5p are required for the correct sorting of ubiquitinated proteins into the MVB. To distinguish whether Ent3p and Ent5p were required for the sorting step per se or rather to mark proteins with ubiquitin for internalization, we investigated whether MVB cargo proteins themselves were ubiquitinated in cells lacking Ent3p and Ent5p. Wild-type and ent3ent5 cells carrying GFP-Cps1 and a high copy number plasmid expressing ubiquitin were lysed, and cell extracts were subjected to immunoprecipitation with an anti-GFP antibody. Western blot analysis of the immunoprecipitated proteins with an anti-ubiquitin antibody revealed the presence of ubiquitinated forms of Cps1p in ent3ent5 cells (Figure 6A), whereas these forms of CPS were difficult to detect in wild-type cells, as already reported previously (Katzmann et al., 2001; Shih et al., 2002). This result indicates that Ent3p and Ent5p function downstream of cargo ubiquitination in the sorting function.
Epsins and Ent1p and Ent2p contain two or three copies of an UIM immediately after the ENTH domain (Polo et al., 2002). The function of these UIMs is to bind ubiquitinated cargo (De Camilli et al., 2002; Shih et al., 2002; Aguilar et al., 2003). Ent3p and Ent5p are required for ubiquitin-dependent sorting at the MVB, but they do not possess obvious ubiquitin-binding domains (UBC-like, UIM, UBA, or CUE; Hofmann and Bucher, 1996; Hofmann and Falquet, 2001; Polo et al., 2002; Shih et al., 2002). To ascertain that in Ent3p and Ent5p there was no other, as yet unidentified ubiquitin-binding motif, we performed ubiquitin-binding assays. GST-Ent3 and GST-Ent5 recombinant proteins were unable to bind ubiquitin-sepharose, whereas recombinant His6-tagged Vps27p, which contains two UIMs, specifically bound to ubiquitin-sepharose (Figure 6B). Taken together, these data suggest that Ent3p and Ent5p, although necessary for sorting ubiquitinated cargo at the MVB, are required neither for ubiquitin addition to cargo proteins nor for the direct binding to ubiquitinated cargoes. Therefore, they might act via interaction with other proteins of the sorting machinery present on endosomes during MVB formation, which in turn directly interact with ubiquitinated cargo.
Ent3p, Ent5p, and Vps27p Associate
In yeast, Ent1p/Ent2p UIMs are important for the internalization of receptors at the plasma membrane, and Vps27p/Hse1p UIMs are necessary to sort biosynthetic and endocytic cargo into the MVB (Bilodeau et al., 2002; Shih et al., 2002). In contrast to Vps27p and Ent1p/Ent2p, Ent3p and Ent5p have no known ubiquitin-binding motif. We show that these proteins do not directly interact with ubiquitin, but are required for ubiquitin-dependent sorting at the MVB. Thus there must be (an) additional effector(s) associated with Ent3p/Ent5p to link them to ubiquitin. Since Vps27p contains UIMs and is at the top of the ESCRT cascade, it was the most obvious candidate connector between Ent3p/Ent5p and ubiquitin (Katzmann et al., 2003). To investigate whether Ent3p and Ent5p interacted with Vps27p, we performed pull-down assays using recombinant GST-Ent5 and cytosol from yeast cells expressing epitope-tagged Vps27p (Vps27-HA) as the sole source of Vps27p. Vps27p and Ent3p interacted with GST-Ent5 but not with GST alone (Figure 7A). These interactions were not dependent on the presence of Hse1p, a protein associated in a complex with Vps27p (Bilodeau et al., 2002), as demonstrated by the same experiment using cytosol from a strain lacking Hse1p (Figure 7A). Thus, Vps27p, without its partner Hse1p, is sufficient to promote interaction with Ent3p and Ent5p proteins.
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We next wanted to know whether Ent3p, Ent5p, and Vps27p associated in vivo and therefore analyzed yeast cytosol by gel filtration and coimmunoprecipitation assays. Vps27-HA expressed as the sole copy of Vps27p in vps27 cells eluted in multiple peaks in high-molecular-weight fractions. Four different peaks ranging from 1100 to 500 kDa were observed in fraction 1, fractions 4-6, fraction 9, and fractions 11-12 (Figure 7B). Ent3p eluted in a broad peak (fractions 4-11), with the majority of the protein found in fraction 9 (Figure 7B). Accordingly, in ent5 cells expressing GFP-Ent5, Ent5p coeluted with Ent3p in corresponding high-molecular-weight fractions (fractions 6-11), both proteins concentrating in a peak in fractions 7-9. To determine whether Ent5p and Vps27p are associated with Ent3p in whole cell extracts, we carried out coimmunoprecipitation assays between Ent3p and epitope-tagged Vps27p (Vps27-HA) or Ent5p (GFP-Ent5). Vps27-HA coprecipitated with Ent3p from total cytosol or from fractions of gel filtration experiments (as shown above; Figure 7C). The greatest amount of Vps27-HA coimmunoprecipitated with Ent3p from fractions corresponding to shared peaks, for example from fractions 10-12 (Figure 7C) or from fraction 9 (unpublished data), when compared with coimmunoprecipitation from other fractions, as shown here for fractions 7-8. Ent5-GFP was also coprecipitated with Ent3p from ent5 cytosol (Figure 7D). These experiments show that Ent3p, Ent5p, and Vps27p are associated in vivo.
Further information about Ent3p, Ent5p, and Vps27p association in vivo was obtained by gel filtration of cytosol of yeast cells deleted for Vps27p and carrying GFP-Ent5p. As shown in Figure 7B, GFP-Ent5p was almost completely depleted from the high-molecular-weight peak seen in wild-type extracts. Only a minor fraction of Ent5p remained distributed over fractions 1-10; additionally, a second peak containing the majority of the protein was seen around 230-300 kDa (fractions 16-20). The high-molecular-weight fractions containing Ent3p were shifted to even higher molecular weight fractions (fractions 1-7). This result shows that the deletion of Vps27p had a dramatic effect on the gel filtration elution profile of both Ent3p and Ent5p. On the contrary, deletion of Ent5p affected the fractionation profile of neither Vps27p nor Ent3p (unpublished data), suggesting that in the absence of Ent5p, Ent3p, and Vps27p could still be incorporated into complexes. Taken together, these data suggest that Ent3p, Ent5p, and Vps27p are found together in high-molecular-weight complexes in vivo and suggest that this association may provide a direct link between the ubiquitin- and the PtdIns(3,5)P2-dependent sorting mechanisms into the MVB.
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DISCUSSION |
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TOPABSTRACTINTRODUCTIONMATERIALS AND METHODSRESULTSDISCUSSIONACKNOWLEDGMENTSREFERENCES |
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). A single ent3 deletion strain does not display the defects in MVB sorting observed in ent3-1 mutant cells. This suggested that the point mutation in the ENTH domain of Ent3p found in ent3-1 mutant cells had a dominant effect on MVB protein sorting and that there could be additional PtdIns(3,5)P2 effectors required for MVB sorting (Friant et al., 2003). In our query for ENTH domain proteins redundant to Ent3p, we identified Ent5p. Ent5p was recently identified as a functional homologue of Ent3p associated with clathrin and Gga2p, required for efficient CPY protein trafficking at the late Golgi, suggesting that these two yeast ENTH proteins function together (Duncan et al., 2002). These results and the results we describe suggest that Ent3p and Ent5p share essential functions for membrane trafficking between the late Golgi and the vacuole.
There are two sequence motifs that constitute the homology between Ent3p and Ent5p: first, the signature of the epsin family proteins, the ENTH domain, and second, the presence of several 
-ear-binding acidic motifs (Duncan et al., 2002). Based on the presence of a lysine-rich ANTH-like (AP180 N-terminal homology) motif in the ENTH domain of Ent5p, but absent from the ENTH domains of Ent3p or epsin1, it has recently been proposed that the ENTH domain of Ent5p rather resembles an ANTH domain (Duncan and Payne, 2003). The authors therefore suggested that the ENTH domains of Ent3p and Ent5p are functionally different. Here, we show that both ENTH domains are specific PtdIns(3,5)P2-binding modules required for protein sorting into the MVB. Despite their sequence divergence the two domains share the same lipid specificity. This could be either due to sequence or structure conservation of the critical PtdIns(3,5)P2 recognition site, or to both. It will be very interesting to gain structural, and hence mechanistic information on the two ENTH domains of Ent3p and Ent5p, and especially to identify the residues responsible for PtdIns(3,5)P2 binding.
Synthesis of PtdIns(3,5)P2 by Fab1p is required for the selective sorting of ubiquitinated cargo into the MVB (Odorizzi et al., 1998; Reggiori and Pelham, 2001; Shaw et al., 2003). Our experiments show that the PtdIns(3,5)P2 effectors Ent3p and Ent5p are also required for the correct sorting of ubiquitinated cargo into the MVB. We show that in the absence of both proteins, biosynthetic and endocytic cargo destined to the vacuolar lumen, like Phm5p, Cps1p, and Ste2p, are mis-sorted to the vacuolar membrane, showing that Ent3p and Ent5p are required for sorting of ubiquitinated cargo into the MVB. Furthermore, we demonstrate that Ent3p and Ent5p are not necessary to mark proteins for ubiquitination and do not directly interact with ubiquitinated proteins to recruit them into vesicles. Collectively, these results strongly suggest that the PtdIns(3,5)P2 effectors Ent3p and Ent5p are required neither for ubiquitination, nor for direct recognition of ubiquitinated cargoes at the late endosome, but rather for a later step of ubiquitin-dependent protein sorting into the MVB.
Here we show that Ent3p, Ent5p, and Vps27p are associated in vivo. Our GST pull-down, gel filtration, and coimmunoprecipitation experiments suggest the three proteins to be in complexes of very high molecular weight. The very large peak observed for all three proteins (ranging from 500 to far >750 kDa) suggests that they are present in different complexes. Furthermore, the presence of the three proteins in complexes eluting in fraction 9 and the pull-down of both Vps27p and Ent3p with GST-Ent5p, suggest that they are associated with each other in this complex or that Ent3p and/or Ent5p may interact indirectly with Vps27p via the ESCRT-I complex (Bilodeau et al., 2003; Katzmann et al., 2003). In the absence of Vps27p, the distribution of Ent5p and Ent3p over the fractionation profile is dramatically altered. Ent5p is mainly found in lower-molecular-weight fractions, in a peak that contains subcomplexes lacking Vps27p, whereas Ent3p is found in higher-molecular-weight fractions. Moreover, the absence of Ent5p affected the fractionation profile of neither Vps27p nor Ent3p (unpublished data), suggesting that in the absence of Ent5p, Ent3p, and Vps27p could still be incorporated into complexes. These results suggest that Ent3p and Vps27p are the key effectors in these high-molecular-weight complexes, and Ent5p might be an accessory protein redundant to Ent3p. This might explain why the ent3-1 and ent3-2 mutant strains have a dominant effect on MVB protein sorting and why a double deletion of ENT3 and ENT5 is required to obtain the same phenotype as displayed by these mutants. Alternatively, complexes might exist containing either Ent3p or Ent5p together with Vps27p, and different "subcomplexes" might well transiently associate with a larger complex. Therefore, it will be interesting to determine the additional components of complexes containing Vps27p, Ent3p, and/or Ent5p and to determine the domains on Ent3p and Ent5p responsible for interaction with Vps27p.
Vps27p is one of the key effectors required for protein sorting into the MVB pathway, because it binds ubiquitin in vitro and because mutations in the UIMs of Vps27p cause defects in protein sorting into the MVB (Bilodeau et al., 2002; Shih et al., 2002). Furthermore, it was recently shown that Vps27p is directly recruited to PtdIns(3)P-containing endosomes where it binds to ubiquitinated MVB cargoes and subsequently recruits the ESCRT-I complex (Bilodeau et al., 2003; Katzmann et al., 2003). This results in sorting of ubiquitinated cargo into the MVB vesicles. Recent studies permitted the unraveling of different steps leading to the recruitment of ubiquitinated cargo to the site of MVB formation. Despite all these new data, some clues are still missing. For example, the mechanism triggering the formation of invaginating vesicles of the MVB compartment is still unknown. Here we identified two new partners of Vps27p: Ent3p and Ent5p, two PtdIns(3,5)P2 effectors required for ubiquitin-dependent protein sorting into the MVB. It has been proposed that a function of the epsin1 ENTH domain at the plasma membrane is to induce membrane curvature (Ford et al., 2002). Once bound to PtdIns(4,5)P2, the 8-helix-folded ENTH domain of epsin 1 rearranges and an additional helix is formed (0, Figure 1). By inserting 0 into the cytoplasmic leaflet of the membrane bilayer, the ENTH domain is capable of pushing aside lipid head groups, thereby inducing curvature of the membrane and facilitating formation of clathrin-coated pits. We envisage that the role of the ENTH domains of Ent3p and Ent5p could be similar to that of epsin1. Ent3p and Ent5p, by inserting their ENTH domains into the endosomal membrane after PtdIns(3,5)P2 binding, could well induce the invagination required for the formation of internal vesicles. This process is topologically reversed when compared with formation of coated pits at the plasma membrane, and it therefore infers that the way the ENTH domains of Ent3p and Ent5p deform membranes might be analogous but inverse. Indeed, neither the lipid specificity nor the residues defining this specificity are conserved between epsin1 and Ent3p or Ent5p ENTH domains (Figure 1). The putative 0 helix is exacerbated in length in Ent3p and Ent5p when compared with other members of the epsin family, which could well account for a differing ability to deform membranes. To better understand the mechanism behind this process it will be of invaluable importance to obtain information on the structure of the ENTH domains of Ent3p and/or Ent5p.
Interestingly, the morphology of cells lacking Ent3p and Ent5p differs from both fab1 and vps27 cells, fab1 cells displaying one highly enlarged vacuole and the vps27 an enlarged endosomal/prevacuolar structure, whereas the ent3ent5 cells showed fragmented and small vacuoles. Additionally, the vacuoles of Fab1p-depleted cells display a defect in acidification, whereas the fragmented vacuoles in ent3ent5 cells are properly acidified. In fab1 cells the enlarged vacuole is the result of the lack of PtdIns(3,5)P2 synthesis (Bonangelino et al., 2002), whereas it is likely that ent3ent5 cells are not affected in PtdIns(3,5)P2 synthesis, but rather in PtdIns(3,5)P2 binding. The ent3ent5 cells do not display classical class E phenotype, which might be due to their implication in different membrane trafficking pathways to the vacuole (Duncan et al., 2002). Furthermore, Ent3p was recently shown to interact with Vti1p (Chidambaram et al., 2004), a v-SNARE required for biosynthetic membrane trafficking pathways to the vacuole (Fischer von Mollard and Stevens, 1999). Therefore absence of Ent3p and Ent5p could lead to a partial defect in the vesicle fusion with the vacuole, explaining the fragmented vacuolar phenotype and the CPY and ALP maturation delay that was observed in ent3-1, ent3-2 and ent3ent5 mutant strains (Friant et al., 2003).
The intracellular localization of Ent5p to the endosomes is affected in fab1 cells that are impaired in PtdIns(3,5)P2 synthesis, but not in vps27 cells. Furthermore, Vps27p is not required for the localization of Ent5p to the class E compartment of vps24 cells. These results show that the endosomal localization of Ent5p is mediated via its interaction with PtdIns(3,5)P2 and does not require Vps27p.
A picture, illustrating how sorting at the MVB could be regulated, is now emerging from our work and from previous reports. Vps27p, as a key player, binds to PtdIns(3)P rich domains on endosomal membranes, recruits ubiquitinated cargo proteins via its UIM and activates the ESCRT cascade (Bilodeau et al., 2003; Katzmann et al., 2003). These events might trigger an uncharacterized signaling event to Fab1p, which is localized to PtdIns(3)P-rich patches via its FYVE-domain and which, once activated, produces PtdIns(3,5)P2. Ent3p and Ent5p are then recruited to endosomal membranes on PtdIns(3,5)P2-rich patches and might induce membrane curvature and formation of MVB vesicles. By interacting with Vps27p-cargo complexes, Ent3p and Ent5p could ultimately contribute to the recruitment of these cargoes into nascent vesicles. This model for ubiquitinated cargo sorting into the MVB is similar to the one proposed for ubiquitin-dependent protein internalization in the endocytic pathway. The main difference is that the epsins required for endocytosis contain both the ENTH domain responsible for membrane deformations and the UIMs implicated in ubiquitinated receptor binding and in recruitment to the site of plasma membrane invaginations (Bilodeau et al., 2002; Polo et al., 2002; Raiborg et al., 2002; Shih et al., 2002). Here, in the case of the MVB pathway, a second effector, Vps27p, constitutes the link with ubiquinated cargo.
In summary, we identified Ent3p and Ent5p as the first connectors between the PtdIns(3,5)P2- and the Vps27p-ubiquitin-driven sorting machinery at the multivesicular body. Many aspects, such as the downstream effectors of Ent3p and Ent5p, other proteins found in complex with Vps27p, Ent3p, and Ent5p or the mechanism allowing recruitment of cargo into the vesicles remain to be elucidated. Genetic and molecular studies in yeast, structural studies as well as proteomics should provide better understanding of how Ent3p and Ent5p regulate ubiquitin-dependent sorting into the MVB.
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ACKNOWLEDGMENTS |
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TOPABSTRACTINTRODUCTIONMATERIALS AND METHODSRESULTSDISCUSSIONACKNOWLEDGMENTSREFERENCES |
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Abbreviations used: ALP, alkaline phosphatase; CPY, carboxypeptidase Y; ENTH, epsin NH2-terminal homology; ESCRT, endosomal sorting complex required for transport; FYVE domain, Fab1, YGL023, Vps27 and EEA1 domain; MVB, multivesicular body; PC, phosphatidylcholine; PtdIns(3,5)P2, phosphatidylinositol 3,5-bisphosphate; Ub, ubiquitin; UIM, Ub-interacting motif; Vps, vacuolar protein sorting.
|| Corresponding author. E-mail address: S.Friant{at}ibmc.u-strasbg.fr.
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REFERENCES |
|---|
|
TOPABSTRACTINTRODUCTIONMATERIALS AND METHODSRESULTSDISCUSSIONACKNOWLEDGMENTSREFERENCES |
|---|
Babst, M., Katzmann, D.J., Estepa-Sabal, E.J., Meerloo, T., and Emr, S.D. ((2002a). ). Escrt-III: an endosome-associated heterooligomeric protein complex required for mvb sorting. Dev. Cell 3,, 271-282.
Babst, M., Katzmann, D.J., Snyder, W.B., Wendland, B., and Emr, S.D. ((2002b). ). Endosome-associated complex, ESCRT-II, recruits transport machinery for protein sorting at the multivesicular body. Dev. Cell 3,, 283-289.
Bilodeau, P.S., Urbanowski, J.L., Winistorfer, S.C., and Piper, R.C. ((2002). ). The Vps27p Hse1p complex binds ubiquitin and mediates endosomal protein sorting. Nat. Cell Biol. 4,, 534-539.
Bilodeau, P.S., Winistorfer, S.C., Kearney, W.R., Robertson, A.D., and Piper, R.C. ((2003). ). Vps27-Hse1 and ESCRT-I complexes cooperate to increase efficiency of sorting ubiquitinated proteins at the endosome. J. Cell Biol. 163,, 237-243.
Bonangelino, C.J., Catlett, N.L., and Weisman, L.S. ((1997). ). Vac7p, a novel vacuolar protein, is required for normal vacuole inheritance and morphology. Mol. Cell. Biol. 17,, 6847-6858.
Bonangelino, C.J., Nau, J.J., Duex, J.E., Brinkman, M., Wurmser, A.E., Gary, J.D., Emr, S.D., and Weisman, L.S. ((2002). ). Osmotic stress-induced increase of phosphatidylinositol 3,5-bisphosphate requires Vac14p, an activator of the lipid kinase Fab1p. J. Cell Biol. 156,, 1015-1028.
Burd, C.G., and Emr, S.D. ((1998). ). Phosphatidylinositol(3)-phosphate signaling mediated by specific binding to RING FYVE domains. Mol. Cell 2,, 157-162.
Burda, P., Padilla, S.M., Sarkar, S., and Emr, S.D. ((2002). ). Retromer function in endosome-to-Golgi retrograde transport is regulated by the yeast Vps34 PtdIns 3-kinase. J. Cell Sci. 115,, 3889-3900.
Chidambaram, S., Mullers, N., Wiederhold, K., Haucke, V., and von Mollard, G.F. ((2004). ). Specific interaction between SNAREs and Epsin N-terminal homology (ENTH) domains of Epsin-related proteins in trans-Golgi network to endosome transport. J. Biol. Chem. 279,, 4175-4179.
Conibear, E., and Stevens, T.H. ((1998). ). Multiple sorting pathways between the late Golgi and the vacuole in yeast. Biochim. Biophys. Acta 1404,, 211-230.[CrossRef]
Cosson, P., and Letourneur, F. ((1994). ). Coatomer interaction with di-lysine endoplasmic reticulum retention motifs. Science 263,, 1629-1631.
De Camilli, P., Chen, H., Hyman, J., Panepucci, E., Bateman, A., and Brunger, A.T. ((2002). ). The ENTH domain. FEBS Lett. 513,, 11-18.
Dove, S.K., McEwen, R.K., Mayes, A., Hughes, D.C., Beggs, J.D., and Michell, R.H. ((2002). ). Vac14 controls PtdIns(3,5)P(2) synthesis and Fab1-dependent protein trafficking to the multivesicular body. Curr. Biol. 12,, 885-893.
Duncan, M.C., Costaguta, G., and Payne, G.S. ((2002). ). Yeast epsin-related proteins required for Golgi-endosome traffic define a gamma-adaptin ear-binding motif. Nat. Cell Biol. 16,, 16.
Duncan, M.C., and Payne, G.S. ((2003). ). ENTH/ANTH domains expand to the Golgi. Trends Cell Biol. 13,, 211-215.
Epple, U.D., Eskelinen, E.-L., and Thumm, M. ((2003). ). Intravacuolar membrane lysis in Saccharomyces cerevisiae. Does vacuolar targeting of Cvt17/Aut5p affect its function? J. Biol. Chem. 278,, 7810-7821.
Felder, S., Miller, K., Moehren, G., Ullrich, A., Schlessinger, J., and Hopkins, C.R. ((1990). ). Kinase activity controls the sorting of the epidermal growth factor receptor within the multivesicular body. Cell 61,, 623-634.
Fischer von Mollard, G., and Stevens, T.H. ((1999). ). The Saccharomyces cerevisiae v-SNARE Vti1p is required for multiple membrane transport pathways to the vacuole. Mol. Biol. Cell 10,, 1719-1732.
Ford, M.G., Mills, I.G., Peter, B.J., Vallis, Y., Praefcke, G.J., Evans, P.R., and McMahon, H.T. ((2002). ). Curvature of clathrin-coated pits driven by epsin. Nature 419,, 361-366.
Friant, S., Pecheur, E.I., Eugster, A., Michel, F., Lefkir, Y., Nourrisson, D., and Letourneur, F. ((2003). ). Ent3p Is a PtdIns(3,5)P(2) effector required for protein sorting to the multivesicular body. Dev. Cell 5,, 499-511.
Futter, C.E., Pearse, A., Hewlett, L.J., and Hopkins, C.R. ((1996). ). Multivesicular endosomes containing internalized EGF-EGF receptor complexes mature and then fuse directly with lysosomes. J. Cell Biol. 132,, 1011-1023.
Gary, J.D., Wurmser, A.E., Bonangelino, C.J., Weisman, L.S., and Emr, S.D. ((1998). ). Fab1p is essential for PtdIns(3)P 5-kinase activity and the maintenance of vacuolar size and membrane homeostasis. J. Cell Biol. 143,, 65-79.
Gaullier, J.M., Simonsen, A., D'Arrigo, A., Bremnes, B., Stenmark, H., and Aasland, R. ((1998). ). FYVE fingers bind PtdIns(3)P. Nature 394,, 432-433.
Gillooly, D.J., Morrow, I.C., Lindsay, M., Gould, R., Bryant, N.J., Gaullier, J.M., Parton, R.G., and Stenmark, H. ((2000). ). Localization of phosphatidylinositol 3-phosphate in yeast and mammalian cells. EMBO J. 19,, 4577-4588.[CrossRef]
Gouet, P., Courcelle, E., Stuart, D.I., and Metoz, F. ((1999). ). ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15,, 305-308.
Hofmann, K., and Bucher, P. ((1996). ). The UBA domain: a sequence motif present in multiple enzyme classes of the ubiquitination pathway. Trends Biochem. Sci. 21,, 172-173.
Hofmann, K., and Falquet, L. ((2001). ). A ubiquitin-interacting motif conserved in components of the proteasomal and lysosomal protein degradation systems. Trends Biochem. Sci. 26,, 347-350.
Holthuis, J.C.M., Nichols, B.J., Dhruvakumar, S., and Pelham, H.R.B. ((1998). ). Two syntaxin homologues in the TGN/endosomal system of yeast. EMBO J. 17,, 113-126.[CrossRef]
Katzmann, D.J., Babst, M., and Emr, S.D. ((2001). ). Ubiquitin-dependent sorting into the multivesicular body pathway requires the function of a conserved endosomal protein sorting complex, ESCRT-I. Cell 106,, 145-155.
Katzmann, D.J., Stefan, C.J., Babst, M., and Emr, S.D. ((2003). ). Vps27 recruits ESCRT machinery to endosomes during MVB sorting. J. Cell Biol. 162,, 413-423.
Kay, B.K., Yamabhai, M., Wendland, B., and Emr, S.D. ((1999). ). Identification of a novel domain shared by putative components of the endocytic and cytoskeletal machinery. Protein Sci. 8,, 435-438.
Marcusson, E.G., Horazdovsky, B.F., Cereghino, J.L., Gharakhanian, E., and Emr, S.D. ((1994). ). The sorting receptor for yeast vacuolar carboxypeptidase Y is encoded by the VPS10 gene. Cell 77,, 579-586.
Nelson, K.K., and Lemmon, S.K. ((1993). ). Suppressors of clathrin deficiency: overexpression of ubiquitin rescues lethal strains of clathrin-deficient Saccharomyces cerevisiae. Mol. Cell. Biol. 13,, 521-532.
Odorizzi, G., Babst, M., and Emr, S.D. ((1998). ). Fab1p PtdIns(3)P 5-kinase function essential for protein sorting in the multivesicular body. Cell 95,, 847-858.
Pelham, H. ((2002). ). Insights from yeast endosomes. Curr. Opin. Cell Biol. 14,, 454
Piper, R.C., Bryant, N.J., and Stevens, T.H. ((1997). ). The membrane protein alkaline phosphatase is delivered to the vacuole by a route that is distinct from the VPS-dependent pathway. J. Cell Biol. 138,, 531-545.
Polo, S., Sigismund, S., Faretta, M., Guidi, M., Capua, M.R., Bossi, G., Chen, H., De Camilli, P., and Di Fiore, P.P. ((2002). ). A single motif responsible for ubiquitin recognition and monoubiquitination in endocytic proteins. Nature 416,, 451-455.
Raiborg, C., Bache, K.G., Gillooly, D.J., Madshus, I.H., Stang, E., and Stenmark, H. ((2002). ). Hrs sorts ubiquitinated proteins into clathrin-coated microdomains of early endosomes. Nat. Cell Biol. 4,, 394-398.
Reggiori, F., and Pelham, H.R. ((2001). ). Sorting of proteins into multivesicular bodies: ubiquitin-dependent and -independent targeting. EMBO J. 20,, 5176-5186.[CrossRef]
Sankaran, V.G., Klein, D.E., Sachdeva, M.M., and Lemmon, M.A. ((2001). ). High-affinity binding of a FYVE domain to phosphatidylinositol 3-phosphate requires intact phospholipid but not FYVE domain oligomerization. Biochemistry 40,, 8581-8587.
Shaw, J.D., Hama, H., Sohrabi, F., DeWald, D.B., and Wendland, B. ((2003). ). PtdIns(3,5)P2 is required for delivery of endocytic cargo into the multivesicular body. Traffic 4,, 479-490.
Shih, S.C., Katzmann, D.J., Schnell, J.D., Sutanto, M., Emr, S.D., and Hicke, L. ((2002). ). Epsins and Vps27p/Hrs contain ubiquitin-binding domains that function in receptor endocytosis. Nat. Cell Biol. 4,, 389-393.
Thompson, J.D., Higgins, D.G., and Gibson, T.J. ((1994). ). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22,, 4673-4680.
Vida, T.A., and Emr, S.D. ((1995). ). A new vital stain for visualizing vacuolar membrane dynamics and endocytosis in yeast. J. Cell Biol. 128,, 779-792.
Wendland, B., Steece, K.E., and Emr, S.D. ((1999). ). Yeast epsins contain an essential N-terminal ENTH domain, bind clathrin and are required for endocytosis. EMBO J. 18,, 4383-4393.[CrossRef]
Wishart, M.J., Taylor, G.S., and Dixon, J.E. ((2001). ). Phoxy lipids: revealing PX domains as phosphoinositide binding modules. Cell 105,, 817-820.
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