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Vol. 17, Issue 2, 598-606, February 2006
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Department of Biochemistry, The University of Texas Southwestern Medical Center at Dallas, Dallas, TX 75390-9038
Submitted May 4, 2005;
Revised November 5, 2005;
Accepted November 7, 2005
Monitoring Editor: Suzanne Pfeffer
| ABSTRACT |
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| INTRODUCTION |
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Ligand binding to growth factor or hormone receptors that lead to their internalization are frequently accompanied by stimulated PLD activity. Although such ligand-induced activity could be part of a signaling cascade and only concurrent with endocytosis, it is also possible that PLD functions directly in endocytosis. Both PLD1 and 2 are found, at least in part, on Golgi membranes, endosomes, and at the plasma membrane, localization consistent with a possible role in endocytosis (Colley et al., 1997
; Toda et al., 1999
; Freyberg et al., 2001
; Hughes and Parker, 2001
; Lucocq et al., 2001
; Du et al., 2003
, 2004
; Hiroyama and Exton, 2005
). Overexpression of catalytically inactive mutants of PLD1 and PLD2 inhibited the down-regulation of epidermal growth factor (EGF) receptors in response to EGF (Shen et al., 2001
), and expression of catalytically inactive or truncated PLD2 perturbed agonist-induced internalization of the angiotensin (Du et al., 2004
) and the µ opioid receptors (Koch et al., 2004
). Phagocytosis in macrophages was also inhibited by expression of truncated PLD2 (Iyer et al., 2004
). These observations are consistent with PLD being required for at least some step in the endocytic pathway.
Agonist-induced endocytosis and phagocytosis differ in important ways and/or use additional components compared with the constitutive endocytosis of nutrient receptors such as the transferrin receptor. The rate of endocytosis of growth factors and hormones is acutely regulated and phagocytosis is a very specialized form of endocytosis that is primarily actin driven. Thus, we were interested in determining whether PLD enzymes are required for constitutive endocytosis, and, if so, in what step. Depleting each isoform of PLD by RNA interference (RNAi), we found that in HeLa cells PLD2, but not PLD1, inhibited the rate of recycling of transferrin receptors but not the rate of internalization. Our results suggest that PLD2 is required for an Arf6-mediated transport of membrane receptors from endosomes back to the plasma membrane.
| MATERIALS AND METHODS |
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tubulin (Sigma-Aldrich), monoclonal antibody recognizing both PLDs (Upstate Biotechnology, Charlottesville, VA), and monoclonal anti-early endosome antigen 1 (EEA1) (BD Transduction Laboratories, Lexington, LY) were purchased from commercial sources. Polyclonal antibodies against PLD1, Arf6, and green fluorescent protein (GFP) were kindly provided by M. Frohman (SUNY Stony Brook, Brooklyn, NY), J. Donaldson (National Institutes of Health, Bethesda, MD), and J. Seemann (University of Texas Southwestern, Dallas, TX), respectively. The plasmid pEGFPC3 was from Clonetech (Mountain View, CA), and pEG-FPC3-EFA6 plasmid was provided by J. Donaldson. pCMV5 plasmids encoding HA-hPIP5KI
, myc-hPIP5KI
were from Dr. H. Yin (University of Texas Southwestern), and a plasmid encoding HA-hPIP5KI
was provided by Dr. P. De Camilli (Yale University, New Haven, CT). Plasmid encoding PLD2 was from M. Frohman (SUNY Stony Brook).
RNA Interference
Small interference RNA (siRNA) oligonucleotides were designed according to the protocols provided by the laboratory of T. Tuschl (Rockefeller University, New York, NY) (http://www.rockefeller.edu/labheads/tuschl/sirna.html). RNA oligonucleotides encoding both the sense and antisense of the target were from the RNA oligonucleotide synthesis core at UT Southwestern. siRNA oligonucleotides were annealed by heating equal amounts of complementing oligonucleotides at 90°C for 1 min at a final concentration of 20 µM in 2 mM Mg-acetate, 100 mM K-acetate, 30 mM HEPES-KOH, pH 7.4, buffer, followed by 1-h incubation at 37°C. The siRNA sequences targeting human PLD1 (GenBank accession no. NM_002662
[GenBank]
) were 1) aaa auc ugg aca cgc ggg aac and 2) aag gaa acc uag uaa cug agc. For human PLD2 (GenBank accession no. NM_002663
[GenBank]
) were 1) aag agg tgg cug gug gug uug and 2) aau ggg gca ggu uac uuu gcu. An oligonucleotide corresponding to nucleotides 695715 of the firefly luciferase (U31240
[GenBank]
) was used as a negative control. On day 1, HeLa or SV589 cells were plated in six-well plates (or glass coverslips in 4-well plates) at 4050% confluence in antibiotic-free DMEM supplemented with 10% (vol/vol) fetal bovine serum (FBS), 1 mM Na-pyruvate, and 10 mM HEPES. Two hours later, siRNA were introduced into cells using Oligofectamine reagent (Invitrogen) according to the manufacturer's instructions, with 10 µl of 20 µM siRNA and 4 µl of transfection reagent/well (amounts for coverslips in 4-well plates were 0.25 these volumes) and left for 1416 h. Medium containing siRNA complexes was removed and replaced with normal growth medium. On day 3 or 4, cells were lysed and analyzed by Western blotting or were used for experiments.
Quantitative Real-Time PCR
Total RNA was extracted from HeLa cells transfected with siRNAs using RNA STAT-60 (Tel-Test, Friendswood, TX) isolation reagent. RNA samples were treated with DNAse I (RNAse-free; Roche Diagnostics), and reverse-transcribed with random hexamers using SuperScript II RNase H-reverse transcriptase (Invitrogen) to generate cDNA. Primer Express software (PerkinElmer Life and Analytical Sciences) was used to design primers for cyclophilin (GenBank accession no. XM_057194), which was used as the internal control, and for PLD1 and 2. The primers for cyclophilin were forward TGC CAT CGC CAA GGA GTAG and reverse TGC ACA GAC GGT CAC TCA AA; for PLD1, forward GCA GCC CCT TTG CTT TTA CT and reverse TAC CCG TGG CTC GTT TTTC; and for PLD2, forward CAA CCG TCT CTT GAC CAT GTC and reverse ACT GAC TTC CAG GAA CTC TGT CAT. Primers were validated through analysis of template titration and dissociation curves to establish both linearity of the reaction and production of a single product. PCR assays were conducted on an Applied Biosystems Prism 7000 sequence detection system. The 20-µl final reaction volume contained 50 ng of reverse-transcribed RNA, 150 nM of each primer, and 10 µl of SYBR Green PCR Master Mix (Applied Biosystems, Foster City, CA). PCR reactions were performed in triplicate and relative RNA levels were determined by the comparative Ct method (User Bulletin No. 2, PerkinElmer Life and Analytical Sciences).
Plasmids Transfections and Microinjection
Plasmids encoding either green fluorescent protein alone (GFP) pEGFPC3 (Clontech) or GFP fused to the exchange factor for Arf6 (pEGFPC3-EFA6) were transfected into HeLa cells using LipofectAMINE 2000 according to the manufacturer's instructions (Invitrogen). The only modification was that the amount of transfection reagent was 0.9 µl, instead of the 1.5 µl suggested, per well of a 24-well plate. Microinjection into HeLa cells was performed using a semiautomatic system consisting of the Transjector 5246 and Micromanipulator 5171 (Eppendorf, Hamburg, Germany) connected to an upright ECLIPSE TE300 microscope (Nikon, Tokyo, Japan). Needles were pulled from 1.2-mm-diameter glass capillaries (Warner Instruments, Hamden, CT) with the use of a P-97 needle puller (Sutter Instruments, Novato, CA). Plasmids were injected into the nucleus at 0.1 µg/µl and incubated for 3 h at 37°C for expression.
Phospholipase D Activity
HeLa cells transfected with siRNAs were labeled for 16 h with 2.5 µCi of [3H]palmitic acid in normal medium. Cells were then washed, and fresh medium without radioactive label but containing 1% (vol/vol) ethanol and phorbol 12-myristate 13-acetate (PMA) in the concentrations indicated was added for 30 min. At the end of 30 min, cellular lipids were extracted (Bligh and Dyer, 1959
). Cells were washed with ice-cold phosphate-buffered saline (PBS) and extracted with 1.2 ml of methanol/phosphate-buffered saline solution at a 2:1 ratio. The cell extracts were scraped and transferred into a 2-ml Microfuge tube, and 0.4 ml of chloroform was added for 30 min at room temperature. After centrifugation for 5 min at 14,000 rpm to pellet cell debris, the clear supernatant was transferred to a glass tube, and 0.5 ml of chloroform and 0.4 ml of 23 mM HCl was added to produce an aqueous and an organic phase. The phases were separated by a spin at 3000 rpm in a Sorvall RT6000B centrifuge for 5 min, and then the aqueous phase was discarded and the organic phase containing the lipids was evaporated under a stream of nitrogen. Lipid extracts were redissolved in 50 µl of chloroform, and 5-µl aliquots were measured in a scintillation counter. Samples containing equal radioactivity were loaded onto TLC plates (LK6DF; Whatman) and resolved in a solvent system of chloroform:methanol:acetic acid:acetone:water at 270:54:54: 108:27 (vol/vol) ratios. The lipid bands were visualized by autoradiography and analyzed using a scanning densitometer (GE Healthcare, Little Chalfont, Buckinghamshire, United Kingdom).
PIP2 Analysis
Cells were labeled with 40 µCi/ml [32P]ortophosphoric acid for 4 h in phosphate-free DMEM containing 0.5% dialyzed FBS. Cellular lipids were extracted with a 4:10:5 mixture of CHCl3:CH3OH:1 N HCl and were resolved by TLC [Si250F (19C); J. T. Baker] in a solvent system composed of n-propanol: H2O:NH4OH(30%) in 65:15:20 (vol/vol) ratios. Lipids were visualized by autoradiography and quantified by densitometry. Lipid standards were detected with iodine vapors.
Endocytosis and Recycling of Transferrin
Cells transfected with siRNA oligonucleotides were rinsed and incubated in serum-free medium for 30 min to remove any residual transferrin and then were exposed to 50 µg/ml transferrin conjugated with Alexa Fluor 488 or 633 (Invitrogen) at 37°C for the times indicated. Internalization was stopped by chilling the cells on ice. External transferrin was removed by washing with ice-cold serum-free DMEM and PBS, whereas bound transferrin was removed by an acid wash in PBS at pH 5.0 followed by a wash with PBS at pH 7.0. The fluorescence intensity of internalized transferrin was measured for 10,000 cells by flow cytometry using an FACSCalibur (BD Biosciences, San Jose, CA) instrument, and the average intensity of the cell population was recorded for each time point. Data are normalized to the maximum increase in mean fluorescence of control cells. We confirmed that the uptake of fluorescent transferrin was receptor-mediated by measuring the uptake of fluorescent transferrin in the presence of a 100-fold excess of nonfluorescent holo-transferrin. No increase in cell-associated fluorescence was obtained in the presence of the excess competing nonfluorescent transferrin. Cell viability was measured by staining with propidium iodide. To measure recycling, cells were incubated first in medium lacking transferrin to free the receptors from ligand and subsequently in medium containing fluorescent transferrin at 37°C for 1 h to completely label the receptor population. Bound transferrin was removed from the cell surface by an acid wash in PBS at pH 5.0 followed by a wash with PBS at pH 7.0. Recycling was then measured as the loss of cell-associated fluorescence by cells incubated in PBS containing 0.2% bovine serum albumin (BSA), 200 µg/ml deferoxamine, and 600 µg/ml unlabeled transferrin for the indicated times at 32 or 37°C. The release of transferrin was stopped by chilling cells on ice and samples were washed and fluorescence was measured as indicated above.
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| RESULTS |
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48 h after transfection. PLD1 was reduced 83 and 90% using two different sets of siRNAs, whereas PLD2 was knocked down 66 and 95% for two sets of siRNA oligonucleotides (Figure 1A). In a previous study, in which we reduced the three isoforms of the type I phosphatidylinositol phosphate kinases with siRNA, we found that their expression was coordinately regulated (Padron et al., 2003Depletion of PLD2 protein was assessed with a panPLD antibody that recognized both PLD isoforms when they were expressed in Sf9 cells. Thus, because cells treated with siRNA against PLD2 contained very little protein recognized by the pan-PLD antibody, our results suggest that HeLa cells might express little PLD1 compared with PLD2. However, we cannot be certain of this because of possible differences in affinity of the antibody for each PLD isoform.
PLD2 Is Required for Efficient Recycling of Transferrin Receptors
We examined the distribution of transferrin receptors in control cells and in cells depleted of PLD by immunofluorescence. Cells with reduced PLD2, but not those with reduced PLD1 (our unpublished data), showed a distinct pattern compared with control cells, most cells having accumulated receptors in a perinuclear, internal compartment (Figure 2A). Accumulation of receptors inside the cell can occur, in principle, by either increasing the rate of internalization or by decreasing the rate of recycling back to the cell surface. Thus, using fluorescently labeled transferrin, we measured both internalization and recycling. Internalization of Alexa-labeled transferrin (50 µg/ml) was followed for 60 min at 37°C, whereas recycling was followed for 30 min at 32°C or for 60 min at 37°C after loading cells for 1 h with Alexa-labeled transferrin at 37°C. Experiments conducted at either temperature showed a reduction in the recycling of transferrin receptors in cells treated with siRNA against PLD2. However, because transferrin recycling at 37°C is very fast, we used a lower temperature, 32°C, to measure initial recycling rates, an approach used by other investigators (Paleotti et al., 2005
) (Figure 2B, recycling). After fitting the data to one-exponential decay (Prism 3.0cx), recycling rate constants were calculated to be 0.087 (R2 = 0.93) and 0.005 (R2 = 0.76) for control and siRNA for PLD2 (siPLD2), respectively. Transferrin recycling assays at 37°C for up to 60 min showed that siPLD2 cells had the same extent of transferrin recycling as control cells (Supplemental Figure 1A). A second pair of PLD2 siRNA oligonucleotides reduced recycling significantly as well, whereas siPLD1 oligonucleotides did not (Supplemental Figure 1B).
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We also depleted PLD2 and measured transferrin receptor recycling in a second human cell line to exclude the possibility that the observed effects in HeLa cells were cell type specific. PLD2 siRNA oligonucleotides were transfected into the transformed fibroblast cell line SV589 (Yamamoto et al., 1984
), using the same protocol as in HeLa and PLD2 protein was measured 2 and 3 d after transfection. In SV589 cells, PLD2 protein was considerably decreased 3 d after transfection, and the kinetics of transferrin recycling was significantly reduced (Figure 3). Recycling rate constant values of 0.085 (R2 = 0.99) and 0.007 (R2 = 0.89) for control and PLD2-depleted cells, respectively, were obtained using the curve-fitting software Prism 3.0cx (GraphPad Software, San Diego, CA).
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Transferrin Receptors Accumulate Abnormally in Rab11-positive Endosomes in Cells with Reduced PLD2
After internalized transferrin receptors fuse with early/sorting endosomes, they return to the cell surface either directly in a fast cycle or through a second compartment, the recycling endosome, in a slower cycle (Maxfield and McGraw, 2004
). To determine in which of these compartments transferrin receptors accumulated, we performed experiments labeling the transferrin receptor and EEA1 or Rab11 antibodies, which are markers for the early/sorting, and recycling endosomes, respectively. We observed that the internal compartment where the transferrin receptor accumulated stained strongly with Rab11 (Figure 5A). Interestingly, we found that in 2030% of cells depleted of PLD2, the Rab11-positive compartment contained tubules of various sizes that seemed largely devoid of transferrin receptors. However, at this point we do not understand the nature or significance of this phenomenon. To label transferrin receptors and early/sorting endosomes, we incubated cells with Alexa 488 transferrin (50 µg/ml for1 h at 37°C) before staining with a monoclonal anti-EEA1 antibody. Transferrin colocalized with EEA1 to some extent as expected. However, in contrast to the previous result, there was no apparent enrichment of EEA1 in the precise location where transferrin accumulated in cells in which PLD2 was reduced (Figure 5B). It is worth noting that, because the panPLD antibody was not suitable for immunofluorescence labeling in conditions compatible with Rab11 labeling, we cannot demonstrate that PLD2 is knocked down in a given cell in the PLD2 siRNA-treated population sample. However, because the phenotype presented in Figure 1 was prevalent and reduced recycling was confirmed in the population, we conclude that the most likely interpretation is that the cells with the typical phenotype after PLD2 depletion in fact had reduced PLD2.
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20% lower than in untransfected HeLa cells (Figure 2), possibly because of the stress produced by the transfection procedure. However, in GFP-EFA6-expressing cells, the recycling rate increased to 0.11, R2 = 0.81 (n = 4). We noticed that cells previously transfected with PLD2 siRNA did not tolerate subsequent transfection with the LipofectAMINE 2000 reagent. Thus, to determine whether EFA6 required PLD2, we turned to microinjection to express EFA6 and used microscopy to follow the effects on transferrin endocytosis. PLD2-depleted and control cells that had been microinjected with plasmid DNA encoding GFP-tagged EFA6 were incubated for 1 h in Alexa 568 transferrin. After surface transferrin was removed by a pH 5.0 wash, cells were fixed and prepared for microscopy. As reported previously (Franco et al., 1999
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(Honda et al., 1999
, an enzyme that, when overexpressed, has been shown to increase PIP2 levels in cells (Yamamoto et al., 2001
and 3 h later labeled with fluorescent transferrin and anti-myc antibody. However, hPIP5KI
failed to restore transferrin recycling in PLD2-depleted cells; cells treated with PLD2 siRNA that overexpressed hPIP5KI
maintained the increased accumulation of internal transferrin typical of cells with reduced PLD2 (Figure 8D). The other PIP5KI isoforms,
and
, also failed to restore recycling of transferrin (our unpublished data). | DISCUSSION |
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PLD activity is stimulated by receptors for a variety of ligands such as hormones or growth factors. In our assay conditions, no activators are used, so the PLD activity is constitutive. Indeed, we did see a reduction in this constitutive activity after PLD2 depletion (Figure 4). In contrast, PLD1 depletion did not decrease constitutive activity, even though it did reduce the PMA-stimulated activity. Thus, in HeLa cells PLD2 is the primary, if not the sole, contributor of steady-state PLD activity. PA produced by this activity could be used for a "housekeeping" function of PLD, such as recycling in the endocytic pathway, in addition to the previously known activities of PLDs after stimulation.
Our colabeling experiments suggest that cells in which PLD2 is depleted accumulate transferrin receptors in a Rab11-positive compartment, probably the recycling endosome. Thus, PLD2 might be acting in a recycling pathway between recycling endosomes and the plasma membrane. Alternatively, PLD2 could be acting in the fast recycling pathway in the early endosomes, and cells depleted of PLD2 would miss-target transferrin receptors to the slow (Rab11) recycling pathway. The latter possibility combined with the involvement of EFA6 in recycling described here is consistent with a proposed functional role of Arf6 in the endosomal sorting processes where clathrin-dependent and independent internalized cargo seem to converge (Naslavsky et al., 2003
, 2004
). Little is known about the molecular machinery involved in constitutive return of material from either early or recycling endosomes to the cell surface, but the small GTPase Arf6 seems to mediate one recycling pathway. Whether Arf6 regulates clathrin-dependent or independent endocytosis or both is still controversial. Arf6 mutants have been reported to affect endocytosis of membrane proteins internalized independent of clathrin, such as interleukin-2 receptor
subunit Tac and major histocompatability complex I, as well as the transferrin receptor (D'Souza-Schorey et al., 1995
; Radhakrishna and Donaldson, 1997
; Caplan et al., 2002
; Paleotti et al., 2005
). One possibility is that Arf6 could receive inputs from different regulators and in turn activate different sets of effectors both in time and space to control distinct pathways as well as different steps of a given pathway. For example, SMAP1, a recently discovered GTPase-activating protein preferential for Arf6, seems to control internalization but not recycling of transferrin receptors (Tanabe et al., 2005
), whereas expression of EFA6 decreased the internal accumulation of transferrin receptors, apparently because of increased membrane recycling (Franco et al., 1999
). Recombinant Arf6 could activate partially pure rat brain PLD activity but whether Arf6 can activate PLD2 directly has not been demonstrated (Massenburg et al., 1994
). However, PA was required for Arf6 to activate hPIP5KI
in vitro and tagged-PLD2 colocalized with Arf6 and hPIP5KI
in membrane ruffles produced after EGF treatment in HeLa cells (Honda et al., 1999
). Thus, one possibility is that at least part of the constitutive recycling of membrane is mediated by an EFA6/Arf6 pathway and requires basal PLD2 activity. Our observation that EFA6-mediated recycling is blocked by PLD2 RNAi supports this view. Recently, it was found that sec10, a subunit of the exocyst complex, binds to Arf6-GTP and its depletion by RNAi also inhibited recycling of transferrin receptors (Prigent et al., 2003
). The exocyst is an eight-subunit complex involved in the docking of vesicles to the plasma membrane (Finger et al., 1998
; Guo et al., 1999
). The exocyst seems to integrate inputs from different small GTPase-dependent processes such as Arf6, Rabs, Rho, and Ral (Lipschutz and Mostov, 2002
; Prigent et al., 2003
). Interestingly, both Rho and Ral can bind to PLD and activate or participate in its activation (Hammond et al., 1995
; Jiang et al., 1995
; Luo et al., 1997
). It will be interesting to learn whether Arf6 bound to sec10 is capable of activating PLD2, suggesting that PA may be produced on vesicles during tethering, or whether binding to sec10 inhibits the stimulation of PLD2 by Arf6.
We observed basal production of PIP2 to be reduced by depletion of PLD2. Because Arf6 is a direct activator and PA is a coactivator of PIP5KI enzymes, PIP2 may well be a critical lipid in an Arf6-mediated recycling pathway. However, overexpression of PIP5KI enzymes did not rescue recycling. Therefore, if PIP2 is involved in recycling it does so in combination with other factors, or exogenous PIP5K enzyme activity requires normal PLD2 activity. Unexpectedly, PLD2 depletion also decreased phosphatidylinositol phosphate (PIP) (Figure 8), the precursor of PIP2 that is synthesized by phosphatidylinositol 4-kinases. It is currently not known whether PA has direct or indirect effects on this class of enzymes.
| ACKNOWLEDGMENTS |
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| Footnotes |
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Abbreviations used: PA, phosphatidic acid; PIP, phosphatidylinositol phosphate; PIP2, phosphatidylinositol bisphosphate; PIP5KI, phosphatidylinositol phosphate kinase I; PLD, phospholipase D.
The online version of this article contains supplemental material at MBC Online (http://www.molbiolcell.org). ![]()
Address correspondence to: Michael G. Roth (michael.roth{at}email.swmed.edu).
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