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Vol. 17, Issue 7, 3147-3155, July 2006
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Department of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, Tokyo 113-0033, Japan
Submitted November 21, 2005;
Revised April 3, 2006;
Accepted April 19, 2006
Monitoring Editor: Marianne Bronner-Fraser
| ABSTRACT |
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| INTRODUCTION |
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The primary regulator of the transition from mitosis to meiosis is the distal tip cell, which directs germ stem cells to keep proliferation via the GLP-1/Notch signaling pathway. RNA-binding proteins are known to function downstream of the GLP-1 pathway, in at least two redundant cascades to repress mitosis and/or promote entry to meiosis (reviewed in Kimble and Crittenden, 2005
). GLD-1 and NOS-3 belong to one branch, and GLD-2 and GLD-3 belong to the other branch. GLD-1 is an RNA-binding protein carrying the maxi-KH/STAR domain; GLD-2, an atypical cytoplasmic poly(A) polymerase; GLD-3, a KH-domain RNA-binding protein belonging to the Bicaudal-C family; and NOS-3, one of the three Nanos homologues in C. elegans. Accumulation of GLD-1 is likely to be a crucial step for the mitosis/meiosis decision and is regulated by FBF, NOS-3, and GLD-2. FBF is a generic name of two nearly identical RNA-binding proteins, FBF-1 and FBF-2, which are members of the conserved Pumilio and FBF translational repressors, and are proposed to repress translation of gld-1 mRNA directly. GLD-1 in turn functions as a translational repressor of multiple targets during early meiotic phases of gametogenesis.
The sperm/oocyte switch of germ cells requires germline-specific control on two pivotal sex-determining factors, FEM-3 and TRA-2, and translational repression by RNA-binding proteins plays crucial roles here as well (reviewed in Ellis and Schedl, 2006
). When spermatogenesis takes place, the female fate-inducer TRA-2 must be translationally repressed by GLD-1 and F-box protein FOG-2. The repression of TRA-2 then allows the male fate-inducer FEM-3 to be active. Conversely, FEM-3 has to be translationally down-regulated by FBF and NOS-3 at the sperm/oocyte switch. In regard to the sperm/oocyte switch, GLD-3 has been proposed to antagonize FBF through proteinprotein interaction during spermatogenesis.
In addition to the above-mentioned RNA-binding proteins, the single C. elegans member of the Deleted in Azoospermia (DAZ) protein family plays an important role in gametogenesis (Karashima et al., 2000
). Metazoan DAZ proteins, defined by their homology to human DAZ, are putative translational activators with a well-conserved RNP-type RNA recognition motif (RRM) (reviewed in Yen, 2004
). Human DAZ is encoded by the DAZ gene cluster on the Y chromosome, which is deleted occasionally in azoospermic men (Reijo et al., 1995
). The DAZ gene family has been phylogenically divided into three subgroups (Xu et al., 2001
): The ancestral autosomal BOULE (Drosophila boule, C. elegans daz-1, and mammalian BOULE/Boule); the vertebrate-specific autosomal DAZL (DAZ-like) (zebrafish zDazl, Xenopus Xdazl, and mammalian DAZL/Dazl); and the Y chromosome-linked DAZ found only in higher primates. Analyses of animals defective in some of these DAZ homologues have revealed the requirement of the DAZ family genes for gametogenesis. Knockout of mouse Dazl leads to both male and female sterility, with no mature gametes produced (Ruggiu et al., 1997
). Depletion of Xdazl mRNA causes a failure in the development of Xenopus primordial germ cells (PGCs) (Houston and King, 2000
). The Drosophila boule mutant shows male-specific sterility due to a defect in G2/M transition during spermatogenesis (Eberhart et al., 1996
). In C. elegans, germ cells in the daz-1 hermaphrodite exhibit multiple abnormalities during female meiosis and eventually arrest at the pachytene stage in oogenesis (Karashima et al., 2000
; Maruyama et al., 2005
). Besides phenotypic analyses, there are a number of reports about biochemical characteristics and expression profiles of DAZ homologues, which altogether suggest that the DAZ family proteins bind to the 3' untranslated region (UTR) of target mRNAs and up-regulate their translation (Yen, 2004
; Collier et al., 2005
).
In this article, we present evidence that C. elegans DAZ protein is involved in the sex determination of germ cells. RNA interference (RNAi) of a daz-1 orthologue in C. briggsae, a nematode related to C. elegans, disrupted the sperm/oocyte switch completely. In addition, genetic combination of daz-1 with a conditional or weak masculinization of germline (Mog) mutation indicated that C. elegans daz-1 was also likely to play some role in the sperm/oocyte switch. Further analyses suggested that DAZ-1 might function upstream of FBF and GLD-3. Thus, the daz-1 gene may participate in a cascade of translational regulations responsible for the mitosis/meiosis decision and the sperm/oocyte switch.
| MATERIALS AND METHODS |
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Cloning of the daz-1 Orthologues from C. briggsae and C. remanei
Total RNA from C. briggsae or C. remanei was prepared using TRIzol reagent (Invitrogen, Carlsbad, CA) and Poly(A)+ RNA was selected with Message Maker (Invitrogen). Cb-daz-1 and Cr-daz-1 cDNAs were cloned using Marathon cDNA Amplification kit (Clontech, Mountain View, CA) following manufacturers instructions. For C. briggsae daz-1, two rounds of 3'-rapid amplification of cDNA ends (RACE) polymerase chain reaction (PCR) were performed with primers 5'-ATCCTATCTACCACCTACAC-3' and 5'-ACCACTTCATCCAACAGCAC-3', which were designed according to the expressed sequence tag sequences (GenBank accession nos. R04525
[GenBank]
and R04900
[GenBank]
). Resultant DNA fragments were cloned into the pCR2.1-TOPO vector (Invitrogen). 5'-RACE PCR was performed using a primer 5'-CGTATGGTCCTGGTGAACTG-3'. For C. remanei daz-1, a fragment containing the RRM region was PCR amplified using primers 5'-ACGGTATCAAAAAGACCAA-3' and 5'-ACCATCAAGTGATTTAACCATYTTNAC-3'. A single round of 5'- or 3'-RACE PCR was performed using primers 5'-GCTCACGCAGGTCAGATTCGGTTGT-3' and 5'-ACTCCTCTTCACAACCTTCCCAGCC-3', respectively. Full-length cDNA clones pCR2.1-TOPO-Cb-daz-1 and pCR2.1-TOPO-Cr-daz-1 were constructed based on the 5' and 3' clones.
The deduced sequences of full length Cb-daz-1 and Cr-daz-1 mRNAs were registered to DNA Data Bank of Japan/European Molecular Biology Laboratory/GenBank nucleotide sequence databases under the accession numbers AB236895 and AB236896, respectively.
RNA Interference
Templates for RNA synthesis were PCR-amplified using M13(20) (5'-GTAAAACGACGGCCAGT-3') and T7+M13-reverse (5'-GCGTAATACGACTCACTATAGGGCAGGAAACAGCTATGAC-3') primers, from yk64b4 (daz-1), pCR2.1-TOPO-Cb-daz-1, or pCR2.1-Cr-daz-1. Double-stranded (ds)RNA was synthesized in vitro with T7 RNA polymerase and purified as described (Maeda et al., 2001
). For phenotype analysis, delivery of dsRNA into animals was performed by microinjecting dsRNA solution into the gonad of young adult hermaphrodites (females in the case of C. remanei). F1 progeny laid 1236 h after the injection were grown at 20°C for 5 d and examined. To obtain large amounts of RNAi animals for immunoblotting, RNAi by L1 soaking method was performed (Kuroyanagi et al., 2000
).
Construction of a Strain Expressing DAZ-1-3xFLAG
An XbaI-ScaI genomic DNA fragment of the daz-1 locus was cloned from the cosmid F56D1 into the pBluescript vector (Stratagene, La Jolla, CA). Three tandem copies of the FLAG epitope were inserted into the EcoRV site in the daz-1 ORF, creating pDAZ-1/3xFLAG. pDAZ-1/3xFLAG was mixed with pRF4[rol-6(su1006)], PvuII digested N2 genomic DNA, and injected into the gonads of daz-1(tj3)/mIn1[dpy-10(e128) mIs13] adult hermaphrodites. Fertile animals homozygous for daz-1(tj3) and positive for the roller (Rol) phenotype were selected. The extrachromosomal array was integrated into the genome using UV irradiation as described previously (Mitani, 1995
). One integrant allele obtained was named btIs2.
Preparation of Worm Extracts, Immunoprecipitation, and Reverse Transcription (RT)-PCR Analysis
Preparation of cytosol extracts from the btIs2 strain, RT-PCR, subtraction, and cloning were done essentially as described previously (Lee and Schedl, 2001
). T7 promoter-oligo(dT) primer (5'-AAGCAGTGGTATCAACGCAGAGTAATACGACTCACTATAGGGC(T)30VN-3') was used for the cDNA synthesis from mRNA samples. The PCR primers were 5'-ATCAACGCAGAGTAATACGACTCACTATAG-3' (T7 promoter), 5'-TTGGAGAAGAATGGAATCGAGGAAGGTAAC-3' (fbf-1), 5'-TTGGAGAAGAATGGGATCGAGGAAGGAAGC-3' (fbf-2), and 5'-GCTCATCAAGAAGCTCGCCAAGAGCTACGA-3' (rpl-1).
RNA-Binding Assays
The 3' UTRs of fbf cDNAs and a 365-nt cDNA for the rpl-1 mRNA 3' region were cloned into vector pCR2.1-TOPO (Invitrogen), PCR-amplified with M13 primers, and transcribed in vitro by T7 RNA polymerase. [
-32P]ATP/UTP or biotin-UTP labeling mix (Roche Diagnostics, Indianapolis, IN) was added for labeling reaction. Biotin-RNA pull-down assay was performed as described, using extracts prepared from the daz-1(tj3); btIs2 strain (Lee and Schedl, 2001
). For gel retardation assay, the GST-DAZ-1 protein was expressed and purified from Escherichia coli BL21(DE3) harboring part of the daz-1 ORF (amino acids 1241) cloned in the pGEX-KG vector (GE Healthcare, Little Chalfont, Buckinghamshire, United Kingdom). Binding reaction mixtures contained 4 ng/µl [32P]RNA, 025 ng/µl protein, 1 mM dithiothreitol, 1 mM EDTA, 5% glycerol, 15 mM HEPES, pH 7.4, 75 mM KCl, 1.5 mM MgCl2, 100 mM NaCl, 0.5% Triton X-100, and 500 ng/µl yeast tRNA. Unlabeled competitor RNA was added where needed. Reaction mixtures were incubated at room temperature for 20 min, supplemented with 7.5 µg/µl heparin, and run on a 3.6% native polyacrylamide gel containing 0.5x Tris borate-EDTA.
Immunoblotting
Immunoblotting was performed following standard procedures. Primary antibodies used were anti-FLAG M2 mouse monoclonal antibody (mAb) (Sigma-Aldrich, St. Louis, MO), anti-actin MAB1501 mouse mAb (Chemicon International, Temecula, CA), and anti-FBF polyclonal antibodies (see below). Incubation of antibodies was performed in Can Get Signal reagent (Toyobo Engineering, Osaka, Japan), and signals were detected using an ECL or ECL Plus kit (GE Healthcare). Rabbit anti-FBF polyclonal antibodies were raised against the N-terminal quarter of FBF-1 (amino acids 1153) and affinity purified using the FBF-1 protein blotted on the Immobilon membrane (Millipore, Billerica, MA). Our antibody is likely to recognize both FBF-1 and FBF-2.
Fixation and Staining of Gonads
Extruded gonads were fixed with 3.2% formaldehyde/80% methanol/6.2 mM KH2PO4, pH 7.2, at 20°C and rehydrated with phosphate-buffered saline (PBS) at room temperature. For plain 4,6-diamidino-2-phenylindole (DAPI) staining, DAPI was added to the final concentration of 2 µg/ml. For antibody staining, samples were treated with blocking solution (3% bovine serum albumin in PBS/0.5% Tween 20) for 1 h at room temperature, incubated with primary antibody at 4°C overnight, and incubated with secondary antibody. DAPI was then added to the final concentration of 2 µg/ml. Primary antibodies used were anti-FLAG M2 mAb (Sigma-Aldrich) and anti-OMA-2 antibody (Detwiler et al., 2001
). Secondary antibodies used were Cy3-conjugated goat anti-rabbit IgG and Cy3-conjugated goat anti-mouse IgG (Chemicon International). For whole mount staining, worms were fixed with 20°C methanol and stained with 10 ng/ml DAPI in PBS. Images were captured by a Zeiss Axioplan 2 microscope equipped with a Hamamatsu cooled charge-coupled device camera and fluorescence in situ hybridization software.
| RESULTS |
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3 d after the injection (Figure 2D). This observation suggests that Cb-daz-1 is continuously required for the determination of germ cell sex during the larval and adult stages.
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The above-mentioned observations indicate that DAZ homologues in C. briggsae and C. remanei are required for female gametogenesis, as is the case for C. elegans, but that there may be some subtle differences in the phenotypes among the three worm species.
The daz-1 Mutation Enhances Masculinization of Weak Mog Mutants in C. elegans
The terminal phenotype of the C. elegans daz-1 mutant was pachytene-arrest during oogenesis, and this phenotype was not rescued by a feminizing mutation that fixes the germline to an oogenic mode (Karashima et al., 2000
), implying that daz-1 was unlikely to be involved in the germ cell sex determination pathway. However, subsequent analysis has revealed that loss of daz-1 function causes anomalies in nuclei at much earlier stages of oogenesis (Maruyama et al., 2005
). Inspired by the RNAi phenotype found in C. briggsae, we investigated whether C. elegans daz-1 could have any role in sex determination.
We tested whether the daz-1 mutation could enhance masculinization in the fem-3(q20gf) mutant (Figure 3). This fem-3 allele carries point mutations in the 3' UTR, which result in temperature-sensitive gain-of-function (gf) (Barton et al., 1987
; Ahringer and Kimble, 1991
). At the restrictive temperature 25°C, fem-3(q20gf) hermaphrodites lose translational repression of fem-3 mRNA, and hence cannot switch from spermatogenesis to oogenesis, giving a Mog phenotype (100% Mog; n = 95) (Figure 3D). They can fulfill the sperm/oocyte switch and produce oocytes at the permissive temperature 15°C (0% Mog; n = 115) (Figure 3C).
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DAZ-1 Can Bind to fbf mRNAs
We cloned several candidate mRNAs that could bind to DAZ-1 using a immunoprecipitation/subtractive PCR method described previously (Lee and Schedl, 2001
). Briefly, a daz-1(tj3) homozygous strain was rescued by an integrated transgene btIs2, which expressed a FLAG-tagged DAZ-1 protein (DAZ-1-3xFLAG) (see Materials and Methods). The expression pattern of DAZ-1-3xFLAG in the daz-1(tj3); btIs2 strain was confirmed to be identical with that of DAZ-1 in the wild-type strain (Figure 4A) (Maruyama et al., 2005
). DAZ-1-3xFLAG was immunoprecipitated with anti-FLAG antibody from a cell extract prepared from the daz-1; btIs2 strain (Figure 4B), and coimmunoprecipitated mRNAs were purified and reverse transcribed into cDNA. Subtractive PCR was performed between this cDNA sample and a control sample prepared using anti-IgG antibody, to eliminate background precipitates. Candidates for a target of DAZ-1 thus identified included fbf-1 and fbf-2 mRNAs, which encode nearly identical translational repressors important for the sperm/oocyte and mitosis/meiosis decisions in germ cells (Zhang et al., 1997
; Crittenden et al., 2002
). We confirmed significant concentration of fbf mRNAs in the DAZ-1 immunoprecipitate by RT-PCR analysis, compared with rpl-1 mRNA encoding ribosomal protein L1 as a control (Figure 4B). The 3' UTR of each fbf mRNA contains two (A/C/U)GUUC sequences and two U-rich tracts, which are known to be preferentially bound by some vertebrate DAZ proteins (Houston et al., 1998
; Venables et al., 2001
; Maegawa et al., 2002
) (Figure 4C). Related (A/C/U)GUnC sequences are also present in them. Biotin-labeled 3' UTRs of fbf mRNAs synthesized in vitro could effectively pull down the DAZ-1-3xFLAG protein from a worm extract (Figure 4D). In a mobility shift assay, DAZ-1 protein could bind to fbf 3' UTRs (Figure 4E). This binding was sequence dependent, because mutant forms of fbf 3' UTRs in which all the GUnC motifs were converted to their complementary sequences (CAnG) (Figure 4C) could not compete for the DAZ-1RNA interaction as efficiently as the wild-type UTRs (Figure 4E).
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| DISCUSSION |
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Although our results are consistent with a hypothesis that the daz-1 mutation causes up-regulation of fem-3, we have not yet shown that the activity of fem-3 is indeed derepressed in the daz-1 mutant. So far we have not succeeded either in producing antibodies specific enough to FEM-3 protein or in obtaining a transgenic line that expresses functional tagged FEM-3 protein. Another point to be noteworthy may be that, whereas the gld-3(ok308) mutation partially compensates the oogenic defect of the daz-1 mutant, as shown in this study, a loss-of-function mutation in fem-3, fem-3(e2006) does not (Karashima et al., 2000
). This difference could be because DAZ-1 or FBF may have multiple downstream targets, as is often the case with RNA-binding proteins. A recent finding that the FBF proteins repress fog-1 and fog-3 in addition to fem-3 seems consistent with this assumption (Thompson et al., 2005
). Efforts to identify additional targets of DAZ-1 and FBF will be required to answer this question.
Functional Conservation and Divergence of the Metazoan DAZ Family
It has been suggested that the principal molecular function of the DAZ family proteins is promotion of mRNA translation. Drosophila Boule has been proposed to translationally control twine, which encodes a meiosis-specific version of Cdc25 protein phosphatase. Mutants defective in boule or twine are both blocked in male meiosis, and overexpression of twine in the boule mutant can partially suppress the meiotic defect (Maines and Wasserman, 1999
). Zebrafish zDazl up-regulates translation of its targets through their 3' UTR sequences (Maegawa et al., 2002
). Our hypothesis that C. elegans DAZ-1 binds to fbf mRNAs to up-regulate FBF expression seems to be in agreement with these previous observations.
Previous studies have revealed two aspects of gametogenesis in which the DAZ family proteins function, one during meiosis and the other before the commitment to meiosis. The former is the progression of meiosis under the regulation of a conserved cell cycle regulator Cdc25 protein phosphatase. Drosophila boule regulates twine, as mentioned above, and mouse Dazl binds to the mRNA for Cdc25C in vivo (Venables et al., 2001
). Our preliminary analysis, however, has shown that transcripts of none of the three C. elegans cdc25 homologues (cdc-25.1, cdc-25.2, and cdc-25.3) (Ashcroft et al., 1998
) can be coimmunoprecipitated with DAZ-1 (our unpublished data). Thus, although C. elegans DAZ-1 clearly has a role in meiosis, it may be unrelated to cdc25.
The latter aspect is the maintenance and differentiation of PGCs. Depletion of Xenopus Xdazl mRNA causes a defect in the differentiation of primordial germ cells (Houston and King, 2000
). Dazl knockout mice are sterile in both female and male, because they lack gametes due to a blockage in meiotic prophase I (Ruggiu et al., 1997
; Saunders et al., 2003
). As shown in this study, C. elegans DAZ-1 seems to act in the regulatory pathway that executes two critical decisions in germ cells: the mitosis/meiosis decision and the sperm/oocyte decision. It will be interesting to investigate whether this DAZ-1 function is homologous to any extent with the aforementioned functions of Xenopus and mouse DAZ family proteins.
DAZ Homologues in Caenorhabditis Nematodes
Several lines of phylogenic analysis suggest that C. briggsae and C. remanei are more closely related to each other than to C. elegans (Fitch et al., 1995
; Haag and Kimble, 2000
; Chen et al., 2001
; Rudel and Kimble, 2001
). Given this assumption, the ancient DAZ protein in the Caenorhabditis nematode must have possessed a long C-terminal region, which has been lost in C. briggsae during evolution. It is of interest whether this change in the protein structure is related to the phenotypic difference seen between depletion of daz-1 and Cb-daz-1. It is also presumable, however, that the apparent divergence of the roles of the DAZ family proteins may depend more on the cellular contexts in which they are situated than on their molecular functions, because a wide range of interspecies complementation is possible among them. Xenopus Xdazl and human BOULE can substitute Drosophila boule, and human DAZ and DAZL can rescue the Dazl knockout mouse to some extent (Houston et al., 1998
; Slee et al., 1999
; Vogel et al., 2002
; Xu et al., 2003
). Further analysis of the biochemical properties of C. elegans DAZ-1 may clarify these interesting questions.
| ACKNOWLEDGMENTS |
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| Footnotes |
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Address correspondence to: Masayuki Yamamoto ( yamamoto{at}biochem.s.u-tokyo.ac.jp)
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