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Vol. 17, Issue 9, 3793-3805, September 2006
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*Howard Hughes Medical Institute and Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN 37232;
The Scripps Research Institute, La Jolla, CA 92037; and
Department of Biochemistry, University of Washington, Seattle, WA 98195
Submitted January 17, 2006;
Revised June 5, 2006;
Accepted June 7, 2006
Monitoring Editor: Sandra Schmid
| ABSTRACT |
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cells are inviable and exhibit defects in SPB integrity, and hence in spindle formation, chromosome segregation, and SIN localization. Ppc89 overproduction is lethal, resulting primarily in a G2 arrest accompanied by massive enlargement of the SPB and increased SPB MT nucleation. These results suggest a fundamental role for Ppc89 in organization of the S. pombe SPB. | INTRODUCTION |
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The spindle-pole body (SPB) is the yeast analog of the centrosome; its structure, composition, and organization are well characterized in the budding yeast Saccharomyces cerevisiae (Adams and Kilmartin, 2000
). The S. cerevisiae SPB appears as a multilayered cylindrical structure that is always embedded in the nuclear envelope (NE) as visualized by electron microscopy (EM). Each SPB can be divided into three layers: the outer plaque on the cytoplasmic face, the central plaque in the plane of the NE, and the inner plaque on the nuclear side of the NE (Adams and Kilmartin, 2000
; Jaspersen and Winey, 2004
). The site of new SPB formation, called the half-bridge, is joined to the central plaque (Jaspersen and Winey, 2004
).
Far less is known about the SPB in the fission yeast Schizosaccharomyces pombe. The complete composition of the S. pombe SPB has not been determined, and there remains some uncertainty even as to when during the cell cycle the S. pombe SPB duplicates. Although it was first reported to duplicate in late G2 (Ding et al., 1997
), a recent study indicates that the SPB duplicates at the G1/S boundary from a half-bridge (Uzawa et al., 2004
), much like the S. cerevisiae SPB. Structural studies show that the S. pombe SPB is an amorphous body with an electron-dense central line. It is tethered to the outside of the NE until mitosis, when it embeds in the NE (Ding et al., 1997
; Uzawa et al., 2004
). Cut11, which localizes to the NE and nuclear pore complexes throughout the cell cycle, is needed for the SPB to embed in the NE and becomes concentrated at the site of SPB insertion during mitosis (West et al., 1998
). During meiosis, the S. pombe SPB leads the nucleus in dynamic oscillatory movements termed "horsetail" (reviewed by Sawin, 2005
), which are necessary for normal rates of recombination and also serve to initiate spore formation at the end of meiosis (Shimoda, 2004
).
Although the full complement of S. pombe SPB components has not been determined, some proteins have been identified based on homology to S. cerevisiae components or through genetic screens. One structural component identified is the coiled-coil protein Pcp1, the homologue of S. cerevisiae Spc110 (Flory et al., 2002
). Spc110 binds calmodulin and links the gamma tubulin complex (
-TuC) to the central plaque of the SPB (Knop and Schiebel, 1997
; Sundberg and Davis, 1997
). Another structural element is centrin/Cdc31. This protein is a part of the SPB half-bridge and controls SPB duplication (Paoletti et al., 2003
). Several proteins have been identified that localize at the SPB between the NE and the SPB. One such component is Sad1. Sad1 contains one transmembrane helix domain and is required for mitotic functions of the SPB (Hagan and Yanagida, 1995
). Interacting with Sad1 are Kms1 and Kms2, which contain coil-coiled and transmembrane helices and are not essential for vegetative growth (Niwa et al., 2000
; Miki et al., 2004
). Kms1 is essential for telomere clustering and SPB function during meiosis (Shimanuki et al., 1997
). The less well-characterized kms2 mutant is reported to have mitotic defects (Miki et al., 2004
). Another group of SPB proteins has been identified based on their specific requirement during meiosis. Among these proteins are Hrs1/Mcp6, a coiled-coiled protein produced specifically during meiosis (Saito et al., 2005
; Tanaka et al., 2005
), and Ssm4 (Niccoli et al., 2004
), a p150-Glued protein, which are both required for horsetail nuclear movement and recombination of sister chromosomes, and Spo15, a meiotic coiled-coil SPB protein involved in spore membrane formation (Ikemoto et al., 2000
).
In addition to the MTOC functions discussed above, the SPB in S. pombe functions as an assembly site for a signal transduction network, called the septation initiation network (SIN) (reviewed by McCollum and Gould, 2001
; Simanis, 2003
; Krapp et al., 2004b
). The SIN is a GTPase-regulated protein kinase pathway that coordinates proper chromosome segregation with mitotic exit and cytokinesis. All components of this pathway localize to the SPB during at least a portion of the cell cycle, and the signal for cytokinesis is thought to emanate from there (Bardin and Amon, 2001
; McCollum and Gould, 2001
; Simanis, 2003
; Krapp et al., 2004b
). Components of the SIN, as well as its regulators, are localized to the SPB through their association with its two scaffolding components, Sid4 and Cdc11, which are constitutively localized to the SPB (Chang and Gould, 2000
; Krapp et al., 2001
, 2004a
; Tomlin et al., 2002
; Morrell et al., 2004
). Sid4 appears to be the SIN component most proximal to the SPB, because its function is required for the SPB localization of all other known SIN components. The C-terminus of Sid4 directs the protein to the SPB, whereas the Sid4 N-terminus binds directly to the C-terminus of Cdc11 as well as to the polo-like kinase Plo1 and the SIN inhibitor Dma1 (Guertin et al., 2002
; Tomlin et al., 2002
; Morrell et al., 2004
). The N-terminus of Cdc11 binds Spg1, Cdc16, Sid2, and Cdk1-Cdc13 (Morrell et al., 2004
). However, although Sid4 is stably associated with the SPB, it is not clear how it is integrated into the SPB.
In an effort to reveal additional components, anchors, or regulators of the SIN previously unidentified through genetic screens, we performed a TAP (tandem affinity purification) analysis on Cdc11. Mass spectrometric analysis of proteins copurifying with Cdc11 identified a previously uncharacterized protein, which we named Ppc89, encoded by the SPAC4H3.11c locus. In this work, we characterize the relationship of this protein to the SIN and its role in SPB function.
| MATERIALS AND METHODS |
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Deletion of the complete ppc89+ open reading frame (ORF) was achieved by PCR-based one-step homologous recombination as described by Bähler et al. (1998)
, using ura4+ as a selectable marker. The amplified fragment was transformed into a h/h+ ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 diploid strain, and stable integrants were selected. Deletion of one copy of ppc89+ in strain KGY774 was confirmed by PCR. Sporulation of KGY774 and tetrad dissection revealed that ppc89+ was essential for vegetative growth. sid4+ deletion was performed previously (Chang and Gould, 2000
).
The ppc89+ ORF was amplified from S. pombe genomic DNA by PCR and cloned into pSK+. The pSKppc89 clone was sequenced in its entirety to confirm that no mutations had been introduced into the ORF. To clone ppc89+ and pieces thereof under control of the nmt promoters in the pREP1, pREP81, and pREP81GFP vectors (Basi et al., 1993
; Maundrell, 1993
; Drummond and Hagan, 1998
), NdeI and BamHI sites were added to the 5' and 3' ends, respectively, of oligonucleotides used for PCR amplification. The NdeI site in each oligonucleotide contributed the initiating methionine codon. Stop codons were incorporated into the oligonucleotides just upstream of the BamHI sites. Similarly, the N-terminus of sid4+ was amplified by PCR using a 5'AseI and 3'NdeI site to allow an N-terminal fusion with the C-terminal sequences of ppc89+ in the pREP vectors. To facilitate depletion and overproduction of Ppc89, the nmt81-ppc89 and nmt1-ppc89 portions of the pREP plasmids were excised with PstI and BamHI and cloned into pJK148 (Keeney and Boeke, 1994
). The resultant plasmids were linearized within the leu1+ gene by digestion with Eco47III and integrated into the leu1 locus of KGY246 to create strains KGY5328 and KGY5333, respectively. To generate a conditional ppc89+ shutoff strain, KGY5328 was crossed to the heterozygous ppc89+ deletion strain (KGY774) and allowed to sporulate on glutamate medium. Random spore analysis was then performed, selecting for haploid cells that were Leu+, Ura+, Ade, and dead in the presence of thiamine.
Fluorescence Microscopy and FRET Analysis
Strains producing YFP- and CFP-tagged proteins were grown in YE medium and visualized live. Images were acquired digitally on a Carl Zeiss MicroImaging Axiovert II inverted microscope (Thornwood, NY) equipped with a Plan Apo 100/1.40 lens, a piezo-electric Z-axis stepper objective motor (Physik Instrumente, Auburn, MA), an UltraView LCI real-time scanning-head confocal (Perkin Elmer-Cetus, Wellesley, MA), a 488-nm argon ion laser (for YFP excitation), and a 442-nm helium cadmium laser (for CFP excitation). Images were captured on an Orca-ER charge-coupled-device camera (Hamamatsu, Bridgewater, NJ). Z-series optical sections for each filter set were captured at 0.5-µm intervals using Ultra-View software (Perkin Elmer-Cetus). Subsequently, the images were deconvolved, merged, and rendered into a single plane using Volocity 3.5.1 software (Improvision, Lexington, MA).
Cells expressing GFP fused at the N-terminus of full-length Ppc89 or Ppc89 fragments from the nmt81 promoter were grown in the absence of thiamine and fixed in methanol or visualized live. To visualize MTs, cells were fixed in methanol and stained with TAT-1 antibodies to
-tubulin (Woods et al., 1989
). Microscopy was performed on a Zeiss Axioskop II equipped with a z-focus motor drive and GFP and DAPI filter sets (ChromaTechnology, Rockingham, VT). Images were captured with an Orca II charge-coupled-device camera (Hamamatsu) and processed and analyzed with Open-Lab 4.0.3 software (Improvision).
For fluorescence resonance energy transfer (FRET), cells were imaged on a DeltaVision microscope (Applied Precision, Issaquah, WA) and analyzed as described by Muller et al. (2005)
(http://depts.washington.edu/
yeastrc/). Briefly, 100 images were captured for each strain. Exposure times were 0.4 s with 2 x 2 binning and a final image size of 512 x 512. The order of image acquisition was YFP, FRET, CFP, and DIC. Images were analyzed with the SoftWoRx program from Applied Precision. For each strain, the tagged protein replaced the wild-type protein and was expressed under the control of the native promoter. FRETR = FRET channel ÷ SpilloverTotal (Muller et al., 2005
). The SpilloverYFP factor was determined from the Sid4-YFP strain KGY4334 and was 0.233 ± 0.040 (n = 85). The SpilloverCFP factor was determined from the Sid4-CFP strain KGY4439 and was 0.486 ± 0.060. SpilloverTotal = (CFPchannel x SpilloverCFP) + (YFPchannel x SpilloverYFP). All fluorescence channels were background-subtracted.
Electron Microscopy
Aliquots of cells expressing Ppc89-GFP were prepared for EM as described previously (Giddings et al., 2001
). Briefly, cells were harvested by vacuum filtration onto 0.45-µm Millipore filters and cryofixed by high-pressure freezing in a HPM-010 (BAL-TEC/RMC, Tucson, AZ). Frozen samples were freeze-substituted in 0.25% glutaraldehyde and 0.1% uranyl acetate in acetone at 80°C, infiltrated with liquid Lowicryl HM20 (Electron Microscopy Sciences, Fort Washington, PA) at 20°C, and polymerized under UV at 45°C. For immunolabeling, 60-nm-thick sections were retrieved on formvar-coated nickel slot grids, and then floated on a series of drops containing 1) blocking solution of 1% nonfat dry milk in phosphate-buffered saline plus 0.1% Tween 20 (PBST), 2) primary antibody (affinity-purified rabbit anti-GFP) diluted 1:150 in blocking solution, and 3) goat anti-rabbit-IgG secondary antibody conjugated to 15-nm colloidal gold (Ted Pella, Redding, CA) diluted 1:20 in blocking solution. The labeled grids were rinsed in PBST followed by distilled water. Sections were stained with 2% uranyl acetate and lead citrate and then viewed in a Philips (Mahwah, NJ) CM10 transmission electron microscope operating at 80 kV. Images were recorded with a Gatan (Pleasanton, CA) BioScan digital camera or on Kodak (Eastman Kodak, Rochester, NY) 4489 electron microscope film.
Protein Methods
Total cell extracts of S. pombe were prepared in NP-40 buffer (Gould et al., 1991
), and immunoprecipitations (McDonald et al., 1999
) were carried out using 5 µg of either 12CA5 (anti-HA) or 9E10 (anti-Myc) monoclonal antibodies (both from Vanderbilt Molecular Recognition Shared Resource). After 1 h of incubation, the immunoprecipitates were washed six times in NP-40 buffer and then resuspended in 2x SDS-PAGE sample buffer (McDonald et al., 1999
).
For immunoblotting, proteins were resolved by 10% SDS-PAGE and transferred by electroblotting to PVDF membrane (Immobilon P; Millipore, Bedford, MA). Antibodies 12CA5 and 9E10 were used at 2 µg/ml in Tris-buffered saline to detect epitope-tagged proteins. These antibodies were then detected using horseradish-peroxidaseconjugated goat anti-mouse-IgG secondary antibodies (0.8 mg/ml; Jackson ImmunoResearch Laboratories, West Grove, PA) at a dilution of 1:50,000. Immunoblots were visualized using ECL reagents (Amersham Pharmacia Biotech, Piscataway, NJ).
Maltose-binding protein (MBP) and MBP fused to full-length Ppc89 were produced in Escherichia coli using plasmid pMAL-c2 (New England Biolabs, Beverly, MA) and purified on amylose beads (New England Biolabs) per the manufacturers instructions. Briefly, the DNA sequence encoding Ppc89 was amplified by PCR from wild-type genomic DNA using primers that introduced EcoRI and BamHI sites at the 5' and 3' ends, respectively. The product was cut with these enzymes and cloned into similarly cut pMAL-c2 to create an MBP-ppc89 fusion. To create pSK(+)sid4 (284660; pKG3159), DNA was amplified by PCR from wild-type genomic DNA using primers that introduced EcoRI and BamHI sites at the 5' and 3' ends, respectively. The product cut with these restriction enzymes and cloned into similarly cut pSK(+). pSK(+) containing full-length Prp19 (pKG1781) was constructed previously (Ohi and Gould, 2002
). Both pKG1781 and pKG3159 were translated in vitro in the presence of [35S]-trans label (ICN Pharmaceuticals, Irvine, CA) with the use of the TNT-coupled reticulocyte-lysate system (Promega, Madison, WI). After the transcription/translation reaction was allowed to proceed for 90 min at 30°C, 1 ml of binding buffer (20 mM Tris-HCl, pH 7.0, 150 mM NaCl, 2 mM EDTA, 0.1% NP-40) was added to the lysates. The lysates were then clarified by centrifugation at 14,000 rpm for 15 min. Purified MBP or MBP-Ppc89 bound to amylose beads was mixed with 35S-labeled Sid4 fragment or full-length Prp19 in binding buffer and incubated for 1 h at 4°C. The beads were washed five times in binding buffer, and the proteins were resolved by 10% SDS-PAGE, treated with Amplify (Amersham Pharmacia Biotech), and exposed to film.
Two-Hybrid Analyses
The yeast two-hybrid system used in this study was described previously (James et al., 1996
). Various portions of ppc89+ or sid4+ were amplified by PCR from genomic DNA and cloned into the bait plasmid pGBT9 and/or the prey plasmid pGAD424 (Clontech, Palo Alto, CA). To test for protein interactions, both bait and prey plasmids were cotransformed into S. cerevisiae strain PJ69-4A. Leu+ and Trp+ transformants were selected and then scored for positive interactions by streaking onto synthetic dextrose plates lacking adenine and histidine.
| RESULTS |
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To determine the intracellular localization of Ppc89 and investigate other properties of this protein, sequences encoding eGFP, Myc13, HA3, YFP, CFP, or the TAP tag were appended to the 3'end of the chromosomal ppc89+ ORF so that normal control of fusion-protein expression was maintained. The resultant strains were wild type in morphology and growth rate, indicating that the tags did not disrupt Ppc89 function. Pcp89-GFP was detected as one or two dots adjacent to the nucleus throughout the cell cycle (Figure 1A), a staining pattern indicative of SPB localization. To confirm that these dots corresponded to SPBs, we examined the localization of Pcp89-CFP in cells also producing Cdc11-YFP. Cdc11 is known to reside at SPBs throughout the cell cycle (Krapp et al., 2001
; Tomlin et al., 2002
). The individual and merged images indicate that Pcp89 and Cdc11 colocalize to SPBs (Figure 1B), an expected result given that the two proteins copurified. Ppc89 was also found to localize to SPBs through immuno-EM. ppc89-GFP cells in exponential phase were fixed by high-pressure freezing and stained with antibodies to GFP and then with colloidal-goldlabeled secondary antibodies. In interphase cells, gold particles were localized in the central region of the SPB that lay adjacent to the NE (Figure 1C and Supplementary Figure 1). In mitotic cells, gold particles appeared in the central region of the SPB in the same plane as the NE or slightly toward the cytoplasmic side (Figure 1C, Supplementary Figure 1, and unpublished observations). A reciprocal TAP experiment was also performed on a ppc89-TAP strain (KGY4293), and mass-spectrometric analysis revealed the presence of Ppc89, Sid4, and Cdc11 (unpublished observations). Taken together, these results suggest that Ppc89 is closely associated with the SIN scaffolding proteins Cdc11 and Sid4 at the SPB.
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::ura4+ segregants from strain KGY1358 (unpublished observation) and the temperature-sensitive lethality of sid4-SA1 cells (Figure 4E). Full-length ppc89+, the C-terminal portion of Ppc89 used in the fusion protein, and any sid4 construct lacking its C-terminal coiled-coil region, such as Sid4 (1300), were not able to rescue growth of sid4-SA1 cells at 36°C (Figure 4E; unpublished observations; Chang and Gould, 2000
Ppc89 Is Required For SPB Integrity and Function
To further elucidate the role of Ppc89, we created a strain containing ppc89
::ura4+ and a copy of ppc89+ under control of the low- strength, thiamine-repressible nmt81 promoter integrated at the leu1 locus (see Materials and Methods). These cells were viable in the absence of thiamine, when ppc89+ was expressed, but failed to grow when the promoter was repressed (Figure 5, A and B). Samples taken 8 h after thiamine addition were stained with DAPI to visualize the nuclei and anti-
-tubulin antibodies to visualize MTs (Figure 5, C and D). (Beyond this point, the majority of cells lysed, and no further assessment of phenotype could be performed.) The majority of cells (68%) were found to contain a single nucleus, although a minor population (6%; Figure 5D, right panel) contained multiple nuclei, indicative of a SIN phenotype. A significant percentage of the cells (15%; Figure 5D, right panel) displayed a "cut" phenotype in which the septum cleaved through an undivided chromatin mass. By immunofluorescence, the majority (79%; Figure 5D, left panel) of Ppc89-depleted cells appeared to contain a normal interphase array of MTs. Another substantial population (14%; Figure 5D, left panel) arrested with a single elongated MT bundle. Only 7% of the cells appeared to be in mitosis, as judged by the presence of a spindle, and most of these had monopolar rather than bipolar spindles. (The population of cut cells was not represented in cells stained for MTs, probably because cell-wall digestion frequently destroys them.) Taken together, these data suggest that cells lacking Ppc89 have defects in organizing SPB MTs, including the mitotic spindle, and that, as a consequence, chromosome segregation fails in those cells that enter mitosis.
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-tubulin complex (
-TuC) component (Vardy and Toda, 2000
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Ppc89 Overproduction Is Lethal and Results in SPB Enlargement
To further examine the role of Ppc89 at the SPB, ppc89+ was placed under the control of the strong, thiamine-regulatable nmt1 promoter. Overproduction of Ppc89 was lethal (Figure 7A), and FACS analysis revealed that the cells arrested with a 2N content of DNA (unpublished observation). The nmt1-ppc89 construct was then integrated into the leu1 locus to facilitate further analysis. To explore the basis of the lethality, Ppc89-overproducing cells were stained with DAPI and antibodies to the known SPB component Sad1 (Hagan and Yanagida, 1995
; Figure 7B). The majority of Ppc89-overproducing cells arrested with a single nucleus, but a significant population (22%) displayed a "cut" phenotype. Interestingly, most cells overproducing Ppc89 contained a single, enlarged focus of Sad1 staining. Ppc89 was also overproduced in strains expressing GFP- or YFP-tagged Sid4, Cdc11, Pcp1, Alp6, or Ppc89 itself. In all cases, single, enlarged GFP or YFP foci were detected that trailed out to give a comet-like appearance (Figure 7C). Immunoblot analysis indicated that the overall levels of these proteins did not change with Ppc89 overproduction (unpublished observation). Taken together, these data suggest that Ppc89 overproduction causes a cell cycle arrest, predominantly in G2/M phase, accompanied by the enlargement of a single SPB.
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-tubulin gene, atb2+, under control of the nmt81 promoter (Sawin et al., 2004
To examine the effect of Ppc89 overproduction on SPB morphology in greater detail, cells were viewed by EM. The majority of cells examined contained an elaborate extension of what appeared to be a reasonably normal SPB-like structure, although it extended away from the NE (Figure 8, AC). In some sections, a dark line was visible through this structure, as in normal SPBs (Ding et al., 1997
; Uzawa et al., 2004
). In cells with this additional SPB-associated material, the SPB itself was not embedded within the NE, and the darkly staining material associated with the SPB on the nuclear side of the NE appeared normal. This extension of SPB material into the cytoplasm is consistent with the localization of various SPB proteins as observed by light microscopy in cells overproducing Ppc89 (Figure 7C). Also consistent with the light-microscopy data, nuclear MTs were not detected adjacent to the enlarged SPBs, but cytoplasmic MTs frequently were (Figure 8C and unpublished observations). Interestingly, in Ppc89-overproducing cells, there were no detectable electron-dense centers or irregularities in the surfaces of the SPBs, such as those typically observed between duplicated but unseparated SPBs (Ding et al., 1997
; Uzawa et al., 2004
; Figure 8, AC). Therefore, these enlarged SPBs are unlikely to be duplicated.
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| DISCUSSION |
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Ppc89 and the SIN
Ppc89 was identified in a TAP analysis of Cdc11, indicating that it associated with one or more SIN components. Through two-hybrid analyses and in vitro binding experiments, Ppc89 was determined to bind Sid4 directly, an association mediated by their respective C-termini and one that can be observed by FRET in vivo. These data indicate that Ppc89 and Sid4 interact on the outer surface of the SPB, where Sid4 (unpublished observation) and Sid2 (Sparks et al., 1999
) have been shown to localize by immuno-EM.
In contrast to all known SIN components and regulators (reviewed by (Balasubramanian et al., 2004
; Krapp et al., 2004b
; Wolfe and Gould, 2005
), Ppc89-GFP remains SPB-associated in sid4-SA1 cells, suggesting that Ppc89 links the SIN to the SPB through its association with Sid4. Indeed, immunolocalization of Ppc89-GFP by EM indicated that it localizes more centrally within the SPB than SIN components. Further evidence in support of this relative arrangement of proteins is the finding that the Sid4 N-terminus fused to the Ppc89 coiled-coil domains is fully functional for SIN signaling. This observation not only suggests a SIN tethering role for Ppc89 but indicates that the N-terminal 300 amino acids of Sid4 is solely responsible for its essential function in the SIN. This conclusion is consistent with the evidence that Sid4 residues 1300 contain the docking sites for the checkpoint protein Dma1p (Guertin et al., 2002
), the mitotic kinase Plo1 (Morrell et al., 2004
), and also Cdc11, which in turn links to all other SIN components and Cdk1-cyclin B (Krapp et al., 2004a
; Morrell et al., 2004
). These data also indicate that the central and C-terminal coiled-coil domains of Sid4 serve solely as a SPB targeting module. Other evidence that Ppc89 tethers Sid4 to the SPB is that both Sid4 and Cdc11 were lost from SPBs in the absence of Ppc89 and that some cells with multiple nuclei and no septa, indicative of SIN defects, were observed in Ppc89-depleted cells.
Ppc89 and SPB Functions
Clearly, however, the major defect of cells lacking Ppc89 is not SIN mis-regulation. Depletion and overexpression experiments showed that Ppc89 is necessary for assembling and/or maintaining a variety of proteins at the SPB that perform different functions. For example, a number of MT defects are caused by Ppc89 overproduction or depletion. This is probably due, at least in part, to changes in the amount of SPB-localized
-TuC, as measured in this study by the localization of Alp6, a core
-TuC element. The
-TuC localizes to the outer and inner faces of the S. pombe SPB, as well as to non-SPB interphase microtubule-organizing centers (iMTOCs) and is responsible for nucleating and anchoring MTs (Hagan and Petersen, 2000
). The MT defects we observed in Ppc89-depletion and overproduction studies are consistent with defects in SPB MTOC functions. In Ppc89-overproducing cells, a greater number of MTs emanated from the enlarged SPBs, as would be expected if the
-TuC had been preferentially recruited to SPBs rather than iMTOCs. Reciprocally, most cells depleted of Ppc89 contained a seemingly normal interphase array of MTs that could be generated from non-SPB MTOCs. However, because these non-SPB MTOCs do not contribute to spindle assembly, it is not surprising that bipolar-spindle formation and proper chromosome segregation were disrupted in Ppc89-depleted cells.
Ppc89 and SPB Structure
The aberrant phenotypes arising from overproduction or depletion of Ppc89 differ from those of any previously identified S. pombe SPB component. For example, Pcp1 overproduction induces formation of multiple foci throughout the cytoplasm and nucleus but not enlarged SPBs (Flory et al., 2002
). Loss of other central SPB components with essential roles during vegetative growth, such as centrin/Cdc31, leads to formation of monopolar spindles in a high percentage of cells (Paoletti et al., 2003
). Because the SPBs can still nucleate MTs in these mutants, it appears that the SPBs remain largely intact in the absence of these proteins. In contrast, our evidence indicates that Ppc89 integrates the assembly of a large number of SPB proteins, including Pcp1, into a well-organized structure. When excess Pcp89 is supplied, at least some portion of the SPB expands. It is interesting that the Ppc89-induced SPB structures extend primarily away from the NE, suggesting that some SPB-NE-tethering factors become limiting. Sad1 appears not to be such a factor, because it appears to be enriched in the nontethered structures. Reciprocally, when Ppc89 is depleted, the SPB apparently disassembles, because we have yet to identify a single SPB marker that remains concentrated as a spot in such cells (this study and unpublished observation). However, until EM studies are performed, the exact defect in SPB structure in the absence of Ppc89 cannot be known. Given that promoter shutoff experiments lead to heterogeneity in the extent of Ppc89 depletion at any given time point, it will be advantageous to perform EM studies on a tight conditional mutant. Such a temperature-sensitive strain is currently being constructed for these purposes.
The extension of the SPB induced by Ppc89 overproduction bears some similarity to superplaque structures formed by overproduction of S. cerevisiae Spc42. These superplaques are formed when the central plaque of the SPB enlarges laterally and bulges out of the NE (Donaldson and Kilmartin, 1996
; Jaspersen et al., 2004
). This enlargement, and the central role played by Spc42 in SPB organization (Muller et al., 2005
), have led us to consider the possibility that S. pombe Ppc89 is a functional analog of S. cerevisiae Spc42. It should be noted that neither of these proteins has an evident homologue in the other yeast, although both contain extensive regions of predicted coiled-coil. Even if Ppc89 and Spc42 are not strictly functional equivalents, it is likely that Ppc89 function or protein level is regulated to control the extent of SPB growth during the cell cycle. This might occur similarly to the regulation of SPB duplication through Cdc28-mediated phosphorylation of Spc42 (Donaldson and Kilmartin, 1996
; Jaspersen et al., 2004
). Because Sid4 and Cdc11 bind the mitotic kinases Plo1 and Cdc2-Cdc13, respectively (Morrell et al., 2004
), Ppc89 would be proximal to these regulators and a potential target.
The defects associated with Ppc89 depletion and overproduction suggest that, in addition to Sid4, it interacts with at least one other protein to organize SPBs. Preliminary mass spectrometric analysis of a Ppc89 purification indicates that several coil-coil proteins including Pcp1 (Flory et al., 2002
), Kms2 (Miki et al., 2004
), and Cut12 (Bridge et al., 1998
) copurify (unpublished observation). These are strong candidates for additional direct binding partners and studies are underway to test this possibility.
Although our data suggest that Ppc89 anchors the SIN to the SPB, it is not yet clear how Ppc89 is organized within the SPB. Specifically, we do not know if the N-terminus of Ppc89 is buried within the SPB, facing into the cytoplasm to bind additional proteins, or both. The self-interacting central coiled-coil domain could allow dimerization in a head-to-head or head-to-tail configuration, and it could also allow oligomerization. Determining the configuration of Ppc89 at the SPB will help us understand how it organizes S. pombe SPB components into functional units.
| ACKNOWLEDGMENTS |
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| Footnotes |
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This article was published online ahead of print in MBC in Press (http://www.molbiolcell.org/cgi/doi/10.1091/mbc.E06-01-0039) on June 14, 2006.
Address correspondence to: Kathleen L. Gould (kathy.gould{at}vanderbilt.edu)
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