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Vol. 18, Issue 4, 1375-1384, April 2007
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*Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104;
Department of Cell and Developmental Biology, University of Pennsylvania School of Medicine, Philadelphia, PA 19104; and
Department of Neurology and Neurobiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213
Submitted August 17, 2006;
Revised December 18, 2006;
Accepted January 24, 2007
Monitoring Editor: Francis Barr
| ABSTRACT |
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| INTRODUCTION |
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Rab5 is a small GTPase localized on early endosomes, and it controls early endosome fusion along the endocytic pathway (Gorvel et al., 1991
; Bucci et al., 1992
; Li and Stahl, 1993
; Rybin et al., 1996
; Li and Liang, 2001
). A population of Rab5-positive early endosomes also contains endocytosed NGFTrkA complexes, and these endosomes are called signaling endosomes (Delcroix et al., 2003
). It is suggested that the endocytosed and activated TrkA may recruit proteins to activate the small GTPase Rap1 on the signaling endosomes (York et al., 2000
; Zhang et al., 2000
). One such pathway may involve the FRS-2/Crk/C3G adaptor system (Meakin et al., 1999
; Nosaka et al., 1999
). Activated Rap1 in turn activates B-Raf, leading to prolonged activation of extracellular signal-regulated kinases (York et al., 1998
), which is associated with neurite outgrowth and cell differentiation. Furthermore, blocking the endocytosis of NGF-TrkA with a dynamin mutant is known to inhibit NGF-induced neurite outgrowth in PC12 cells (Zhang et al., 2000
). Thus, NGF signaling on signaling endosomes is thought to be important for neurite outgrowth and differentiation.
An important question to be resolved is the nature and biogenesis of the signaling endosomes. Although signaling endosomes contain early endosomal markers such as Rab5, they are long-lived, and they are suggested to undergo long-distance retrograde transport from the axon to the cell body of neurons (Howe and Mobley, 2004
). Their relationship with conventional early endosomes is unclear, although it is possible that they are specialized early endosomes that are temporally diverted from the conventional endocytic/degradation pathway to sustain the NGF signaling. In this regard, Rab5 controls the entry to early endosomes and endocytic pathway (Ceresa and Schmid, 2000
; Rink et al., 2005
). Thus, we have initiated an investigation into the activity and function of Rab5 in NGF-mediated neurite outgrowth in PC12 cells.
| MATERIALS AND METHODS |
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Antibodies
The affinity-purified rabbit anti-RabGAP5 antibody was kindly provided by Francis Barr's laboratory (Max-Planck Institute of Biochemistry, Martinsried, Germany). Monoclonal antibodies for actin, FLAG, and Myc were purchased from Sigma-Aldrich (St. Louis, MO), whereas the anti-Rab5 monoclonal antibody (mAb), anti-hemagglutinin (HA) mAb, and anti-TrkA rabbit antiserum were from BD Biosciences, Santa Cruz Biotechnology (Santa Cruz, CA), and Upstate Biotechnology (Lake Placid, NY), respectively. The anti-pTrkA rabbit antiserum was from Cell Signaling Technology (Beverly, MA).
Cell Culture and Transfection
Tet-Off PC12 cells (BD Biosciences) were grown in 35-mm culture dishes in DMEM (Invitrogen) supplemented with 10% heat-inactivated horse serum (Invitrogen), 5% heat-inactivated fetal bovine serum (FBS; Invitrogen), 20 U/ml penicillin/streptomycin (Invitrogen), 1 mM L-glutamine (Invitrogen), and 200 µg/ml Geneticin (G-418; Invitrogen). Cells were incubated at 37°C in a humidified incubator with 10% CO2. For transfection, cells were seeded at a density of 2 x 105 cells/dish, grown to 7080% confluence, and transfected with the indicated plasmids by using Lipofectamine 2000 (Invitrogen) according to the manufacturer's protocol.
Neurite Outgrowth Assay
After cotransfection with pBI/EGFP, cells were allowed to recover in full growth medium and to express the recombinant proteins for 24 h. The growth medium was then replaced with a medium containing only 0.5% horse serum (no FBS) and 50 ng/ml NGF. The medium was incubated at 37°C for 6 d, with replenishment of NGF every 2 d until the sixth day. The NGF concentration was 50 ng/ml unless indicated otherwise. On different days as indicated, cells were fixed in 4% paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA) for 30 min, and neurite outgrowth was observed with either an inverted fluorescence microscope (transiently transfected cells) or a phase-contrast microscope (cloned cell lines). We used a Nikon Diaphot 300 microscope for both purposes. The images were captured by a digital camera, stored in a connected computer, and analyzed with the Nikon ACT-1 software. Differentiated cells were defined as those containing at least one neurite twice as long as the cell body diameter. The percentage of differentiated cells in each case was determined from transfected cells (i.e., cells expressing green fluorescent protein). Standard error of the mean (SEM) was calculated from three to five independent experiments.
Confocal Fluorescence Microscopy
We used a Leica confocal laser scanning microscope with Ar-488 and Kr-568 laser excitation in the Flow and Image laboratory on campus and followed a procedure described previously (Li and Liang, 2001
). Briefly Tet-Off PC12 cells were grown on coverslips coated with collagen IV and transfected with pBI and/or pcDNA3 constructs expressing various enhanced green fluorescent protein (EGFP)-Rab5:S34N, EGFP-Rab5:Q79L, red fluorescent protein (RFP)-Rab5:Q79L, TrkA, or TrkA-EGFP as indicated. RFP represents ds-Red monomer from BD Biosciences. At 24 h posttransfection, the cells were treated with 50 ng/ml NGF for the indicated times, and then they were processed for immunofluorescence microscopy. Cells were rinsed three times with phosphate-buffered saline (PBS) and fixed for 20 min with 4% paraformaldehyde (wt/vol in PBS) at room temperature, followed by permeabilization with 0.1% Triton X-100 (in PBS) for 5 min. The cells were then stained with the anti-pTrkA antibody that specifically recognizes the cytoplasmic domain of activated TrkA and a secondary antibody (goat anti-rabbit IgG conjugated with Alexa568; Invitrogen). The coverslips were then mounted in PBS on glass slides and viewed with the Leica confocal microscope.
Glutathione S-Transferase (GST) Pull-Down Assay
We cloned the cDNA of the Rab5-binding domain (R5BD, residues 739-862) of Rabaptin5 into the pGEX vector (GE Healthcare, Little Chalfont, Buckinghamshire, United Kingdom). The resulting construct was termed pGEX/Rabaptin-5(R5BD), which expressed the fusion protein GST-R5BD in the Escherichia coli strain DH5
upon isopropyl
-D-thiogalactoside induction. GST-R5BD was then affinity purified with glutathione-Sepharose 4B resin (GE Healthcare). Rab5 proteins (WT, Q79L, and S34N) were expressed in Tet-Off PC12 cells by transfection of corresponding pBI constructs and incubation at 37°C for 24 h. Cells were then treated with 50 ng/ml NGF for the indicated times (untreated cells served as controls), followed by washing with ice-cold PBS and lysis for 5 min in the lysis buffer, which contained 25 mM HEPES, pH 7.4, 100 mM NaCl, 5 mM MgCl2, 0.1% NP-40, 10% glycerol, 1 mM dithiothreitol, and protease inhibitor cocktail (Sigma-Aldrich). Lysates were clarified by centrifugation at 10,000g for 2 min at 4°C, and an aliquot (200 µl) of the supernatant was incubated with 20 µl of GST-R5BD bound to the glutathione-Sepharose 4B resin for 10 min at 4°C on a rotating mixer. The resin was subsequently rinsed with the lysis buffer, resuspended in SDS sample buffer, boiled for 3 min, and subjected to SDS-PAGE (15% gel), followed by immunoblot analysis with the anti-Rab5 mAb. The results were quantified by densitometry using Densitometer SI (GE Healthcare).
In Vivo GTPase-activating Protein (GAP) Assay
Cells were cotransfected with pBI/Rab5 and a pBI or pcDNA3 construct expressing one of the GAPs. At 24 h posttransfection, the Rab5-GTP level in the cell was determined by the GST pull-down assay described above.
Establishment of Stable PC12 Cell Lines
Tet-Off PC12 cells were cotransfected with pBI/FLAG-Rab5:Q79L (or pBI/FLAG-Rab5:S34N) and pTK-hyg at a 20:1 ratio by using the Lipofectamine 2000-mediated procedure as described above. The cells were then selected with 150 µg/ml hygromycin (BD Biosciences) in the presence of 1 µg/ml doxycycline (Dox; BD Biosciences). After 3 wk, hygromycin-resistant colonies began to grow. Individual colonies were isolated and transferred to 24-well plates in triplicates, with two samples maintained in the presence of Dox and one sample without Dox to induce the expression of cloned Rab5 proteins for 2 d. Recombinant Rab5 proteins containing the FLAG epitope were identified by immunoblot analysis with the anti-FLAG antibody, and clones with inducible recombinant protein expression were selected and scaled up for further assays.
Cell Growth Rate
Cells were seeded at a density of 1 x 105 cells/well in a six-well plate and incubated at 37°C. Cell numbers were counted each day up to 6 d with a hemacytometer (Hausser Scientific, Horsham, PA), after trypsinization and resuspension in the medium at each time point. The results were averaged from triplicate samples, and error bars represented SEM from three independent experiments.
Coimmunoprecipitation (coIP) Assay
Cells were transfected with pBI/TrkA constructs that coexpressed RabGAP5 or mutants (all contained Myc tag) via Lipofectamine 2000 as described above. Cells were allowed to recover in full growth medium and to express the recombinant proteins for 24 h at 37°C. Before cell lysis, cells were starved in serum-free medium for 24 h and then either treated or not treated with 50 ng/ml NGF for 5 min as indicated. Cells were then rinsed with ice-cold PBS, pH 7.4, and lysed on ice for 45 min in the lysis buffer, which contained 20 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% Triton X-100, 2 mM sodium orthovanadate, 2 mM para-nitrophenol phosphate, and protease inhibitor cocktail (Sigma- Aldrich). After clearing at 10,000 x g for 15 min, cell lysates were incubated with anti-Myc antibody-conjugated agarose beads (Sigma-Aldrich) for 4 h at 4°C. The beads were then washed four times with the lysis buffer and boiled for 3 min in SDS sample buffer, followed by SDS-polyacrylamide gel electrophoresis (PAGE) and immunoblot analysis with anti-TrkA, anti-pTrkA, and anti-Myc antibodies. The results were quantified by densitometry using Densitometer SI (GE Healthcare).
RNA Interference (RNAi) of RabGAP5
We used the pSUPER vector (Oligoengine) to express specific short hairpin RNAs (shRNAs) to knock down RabGAP5 expression in PC12 cells. The 19- or 21-mer oligonucleotides were designed, annealed, and then cloned into pSUPER according to the manufacturer's instructions. The targeting regions included four sequences in rat RabGAP5 and one sequence in its human counterpart as a control, including 5'-GCATCTGGGACCTGTTCTTCT-3' (for rat shRNA1), 5'-GCCCTATTTGAACATGGATTG-3' (for rat shRNA2), 5'-GGCAAAGAACATCAAACAA-3' (for rat shRNA3), 5'-GGCCCTATTTGAACATGGA-3' (for rat shRNA4), and 5'-GCAGAGCAACCAGAGTTCTAC-3' (for human shRNA).
The effectiveness of RabGAP5 knockdown was confirmed by immunoblot analysis. Because of low transfection efficiency, the shRNA constructs were cotransfected with pBI/myc-RabGAP5, followed by immunoblot analysis 48 h later with the anti-myc mAb to examine the level of myc-RabGAP5 expression. For neurite outgrowth analysis, PC12 cells were transfected with either the pSUPER vector alone as a negative control or with each of the shRNA constructs. In this case, pBI/EGFP was cotransfected to identify the transfected cells by fluorescence microscopy, and neurite outgrowth was measured at 48 h posttransfection and for 5 days thereafter with the assay described above.
| RESULTS |
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Inactivation of Rab5 Facilitates Intracellular NGF Signaling
We further investigated directly the effect of expressing Rab5:S34N and Rab5:Q79L on NGF signaling by determining the phosphorylation profile of TrkA upon NGF treatment. In this case, we coexpressed TrkA with either Rab5:S34N or Rab5:Q79L to enhance the ratio of relevant TrkA detection signal in transfected cells versus TrkA background in untransfected cells. Cells were treated with NGF for different times, followed by immunoblot analysis of cell lysates with anti-phospho-TrkA (pTrkA) and anti-TrkA antibodies (Figure 2). The former antibody recognizes the activated, Tyr490-phosphorylated form only. A striking observation was that TrkA phosphorylation/activation was dramatically decreased in Rab5:Q79L-expressing cells, whereas the activation signal was enhanced in Rab5:S34N-expressing cells and sustained for a longer period, in comparison with control cells that expressed TrkA only (Figure 2A). There was a steady-state, basal level of pTrkA, which increased upon NGF treatment. The pTrkA level in Rab5:Q79L-expressing cells was always lower than that in control and Rab5:S34N-expressing cells before and after NGF treatment (Figure 2A). Even the NGF-enhanced pTrkA level in Rab5:Q79L-expressing cells was much lower than that of the basal pTrkA level in Rab5:S34N-expressing cells (Figure 2A). Indeed, there was much higher percentage of pTrkA among total TrkA in Rab5:S34N-expressing cells than in Rab5:Q79L-expressing cells (Figure 2, B and C). Because the total TrkA level in control, Rab5:S34N-expressing, and Rab5:Q79L-expressing cells was similar (Figure 2B), the low pTrkA level seen in Rab5:Q79L-expressing cells was most likely due to rapid dephosphorylation in Rab5:Q79L endosomes rather than to receptor degradation.
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Cloned PC12 Cell Lines: Rab5:Q79L Expression Inhibits, but Rab5:S34N Expression Promotes, NGF-mediated Neurite Outgrowth
To extend the transient expression results, we established a number of Tet-Off PC12 cell lines that expressed the Rab5 mutants upon Dox removal (Supplemental Figure 1). Consistent with the transient expression data (Figure 1), expression of Rab5:Q79L inhibited NGF-induced neurite outgrowth, whereas expression of Rab5:S34N facilitated neurite outgrowth (Figure 4A). In this case, we observed and quantified neurite outgrowth each day upon NGF treatment. Rab5:Q79L-expressing cell lines showed slower neurite outgrowth. The extent of inhibition was less than the transient expression results, possibly due to the lower expression level and/or adjustment and adaptation of the cells. Rab5:S34N facilitated neurite outgrowth in the sense that these cells were more sensitive to NGF treatment. Although it usually took 5 d for the control parental cells to reach maximal neurite outgrowth, it only took 23 d for the Rab5:S34N-expressing cells to reach a similar level (Figure 4A). Although the results in Figure 4A were obtained from clone 1 of FLAG-Rab5:Q79L cell lines and clone 1 of FLAG-Rab5:S34N cell lines (Supplemental Figure 1), we also examined clone 2 of both cell lines and obtained the same results. Furthermore, we determined growth rates of the Rab5:Q79L- and Rab5:S34N-expresssing cell lines over a 6-d period and found that the Q79L-expressing cells grew faster and the S34N-expressing cells grew slower than the control parental PC12 cells (Figure 4B). Again, both cell clones for each mutant showed similar results. In PC12 cells, NGF-induced neurite outgrowth and cell differentiation is usually accompanied by decreased cell growth rate (Greene and Tischler, 1976
). The fact that the S34N cells grew slower suggested that these cells may favor cell differentiation, consistent with the observation that S34N indeed enhanced the neurite outgrowth (Figure 4A). The faster growth rate of the Q79L cells correlated well with the block in neurite outgrowth (Figure 4A). Furthermore, that the Q79L cells grew well indicated that the expression of Rab5:Q79L did not cause cell death or other pleiotropic cytopathic effects, and the inability of these cells to grow neurites was likely a physiological consequence of Rab5:Q79L.
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As a GTPase, Rab5 activity in the cell is reflected by the level of active GTP-bound Rab5, which we determined by developing and using a GST pull-down assay. The assay was based on the specific binding of Rab5-GTP by the R5BD of Rabaptin5 (a Rab5 effector) (Stenmark et al., 1995
; Zhu et al., 2004
). We made GST-R5BD fusion protein and used it to pull-down Rab5-GTP in PC12 cell lysates, followed by immunoblot analysis with a Rab5 antibody to determine the relative amount of Rab5-GTP. Endogenous Rab5-GTP level was too low to be detected in this assay; thus, we transfected the cells with pBI/Rab5 to overexpress Rab5. As positive and negative controls, we expressed Rab5:Q79L and Rab5:S34N mutants, respectively. Rab5:Q79L showed the most robust pull-down signal that reflected high level of GTP-bound form, consistent with its defect in GTP hydrolysis (Figure 6A). WT Rab5 also showed pull-down signal but at a level sevenfold lower than that of Rab5:Q79L (Figure 6A). In contrast, Rab5:S34N showed no pull-down signal, consistent with its defect in GTP binding (Figure 6A). These results demonstrated the feasibility of the GST-R5BD pull-down assay in determining the relative amount of Rab5-GTP in the cell.
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RabGAP5 Activity in PC12 Cells
NGF-mediated down-regulation of Rab5 may require TrkA to recruit a Rab5 GAP, which inactivates Rab5 by stimulating GTP hydrolysis. The Rab5-specific GAP (RabGAP5) was recently identified (Haas et al., 2005
). In addition, other proteins such as RN-tre (Lanzetti et al., 2000
) and TSC2 (Xiao et al., 1997
) were also reported to have GAP activity toward Rab5. Thus, we examined whether these GAPs can actually down-regulate Rab5 in vivo in PC12 cells. We coexpressed each of the GAPs with Rab5:WT in PC12 cells and determined their effect on the level of Rab5-GTP by the GST-R5BD pull-down assay. RabGAP5 and RN-tre showed Rab5 GAP activity and efficiently reduced Rab5-GTP level in the cell (Figure 7A). In contrast, TSC2 showed no Rab5 GAP activity in the cell (Figure 7A). In each case, the total Rab5 expression was the same (Figure 7A). In additional control experiments, we confirmed the expression of each GAP protein (tagged with either Myc or HA epitope) by immunoblot analysis with anti-Myc and anti-HA antibodies (Figure 7B). Importantly, the RabGAP5 protein was abundant in PC12 cells, and we were able to detect endogenous RabGAP5 by immunoblot analysis with the affinity-purified anti-RabGAP5 antibody (Haas et al., 2005
). The antibody recognized a major protein band at
75 kDa with two smaller minor species (Figure 7C). The 75-kDa protein correlated with the full-length RabGAP5 (Haas et al., 2005
), whereas the smaller proteins were likely degradation products. Overexpression of RabGAP5 in these cells, via transfection of a plasmid containing rat RabGAP5 cDNA, enhanced production of the 75-kDa protein species (Figure 7C), confirming that it is indeed RabGAP5.
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| DISCUSSION |
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Our data shed light on the biogenesis of signaling endosomes (Figure 10). NGF binding and signaling induce endocytosis of its receptor TrkA. RabGAP5 associates with TrkA, such that the TrkA-containing endocytic vesicles have low Rab5 activity and thus less opportunity to fuse with early endosomes and enter the EEN. As a result, the TrkA-containing vesicles are diverted from the EEN and specialize to become signaling endosomes, which serve as a platform for signaling processes leading to neurite outgrowth and differentiation. Our model is supported by several lines of evidence. First, low Rab5 activity (Rab5:S34N) facilitates NGF signaling and neurite outgrowth, whereas high Rab5 activity (Rab5:Q79L and Rabex-5) inhibits this process. Second, high Rab5 activity (Rab5:Q79L) diminishes intracellular NGF signaling by rapid dephosphorylation of internalized pTrkA, possibly via gaining access to endosome-associated phosphatases, whereas low Rab5 activity (Rab5:S34N) sustains intracellular NGF signaling by blocking endosome fusion and consequently the access to the phosphatases. Third, NGF signaling leads to down-regulation of Rab5 activity as evidenced by the reduction of Rab5-GTP level in PC12 cells. Fourth, RabGAP5 is found to be associated with TrkA as evidenced by coIP assays. Finally, RabGAP5 RNAi and truncation mutant inhibit NGF-induced neurite outgrowth, strongly suggesting the requirement of RabGAP5 and thus down-regulation of Rab5 in this process. Other Rab5-related functions such as regulation of membrane ruffles (Lanzetti et al., 2004
), could promote neurite growth. Although this possibility cannot be ruled out, it is inconsistent with our data that show Rab5:S34N, which should inhibit Rab5-mediated ruffles, actually increases NGF signaling and neurite outgrowth.
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The fate of signaling endosomes remains an open question. Because Rab5 is retained on signaling endosomes (Delcroix et al., 2004
), the possibility exists that they may eventually reenter the EEN and endocytic pathway upon reactivation of Rab5, which requires the recruitment and action of Rab5 GEFs, e.g., Rabex5 (Horiuchi et al., 1997
) and RIN proteins (Tall et al., 2001
; Kajiho et al., 2003
), to overcome the GAPs. In support of this contention, localized balance of GEFs and GAPs is shown to regulate the activities of Ras-like small GTPases in different compartments (Mochizuki et al., 2001
; Bivona et al., 2003
). In addition, our data show that NGF-induced down-regulation of Rab5 occurs in the initial phase, but cellular Rab5 activity (i.e., the Rab5-GTP level) recovers later, corresponding to the activation and inactivation phases of TrkA. Furthermore, TrkA does eventually reach lysosomes after NGF-induced endocytosis, despite the diversion into signaling endosomes (Zhou et al., 1995
; Jullien et al., 2002
). In this context, we notice a remarkable contrast between NGF signaling that promotes cell differentiation and EGF signaling that promotes cell growth and proliferation. NGF signaling suppresses Rab5 via the RabGAP5 to help establish the signaling endosomes and sustain the differentiation signals (this study), whereas epidermal growth factor signaling enhances Rab5 activity via the Rab5 GEFs to accelerate the entry into the EEN and endocytic pathway (Tall et al., 2001
). In this regard, Rab5 may be considered as a switch in cell fate decision: differentiation versus proliferation.
| ACKNOWLEDGMENTS |
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| Footnotes |
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The online version of this article contains supplemental material at MBC Online (http://www.molbiolcell.org). ![]()
Address correspondence to: Guangpu Li (guangpu-li{at}ouhsc.edu)
Abbreviations used: coIP, coimmunoprecipitation; Dox, doxycycline; EEN, early endosomal network; EGFP, enhanced green fluorescent protein; GAP, GTPase-activating protein; GEF, guanine nucleotide exchange factor; NGF, nerve growth factor; pTrkA, phosphorylated TrkA; RFP, red fluorescent protein; R5BD, Rab5-bindng domain; WT, wild-type.
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