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Vol. 18, Issue 9, 3645-3655, September 2007
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*Cytoskeletal Protein Regulation Section, ||Section on Enzyme Chemistry, ¶Protein and Peptide Facility, National Institute of Neurological Disorders and Stroke, and
Laboratory of Oral and Pharyngeal Cancer, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD 20892; #Robarts Research Institute, London, ONT, Canada N6A 5K8; and
Department of Pediatrics, Case Western Reserve University, Cleveland, OH 44106
Submitted March 13, 2007;
Revised June 8, 2007;
Accepted July 3, 2007
Monitoring Editor: M. Bishr Omary
| ABSTRACT |
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| INTRODUCTION |
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Within the last decade, a novel level of modulation of protein phosphorylation has emerged, namely, the factors that regulate the structural conformation and stability of proteins, particularly those phosphorylated at Ser/Thr-Pro (S/T-P) sites by proline-directed kinases. Most proline-directed kinases (Weiwad et al., 2004
) and phosphatases (Wulf et al., 2005
) are highly selective for trans S/T-P bonds. Peptidyl-prolyl cis/trans isomerases, such as Pin1, specifically target phosphorylated S/T-P sites and, by virtue of the proline residue, can "toggle" an inactive cis isomer to the more stable trans form, often with altered function. Pin1 plays a key role in diverse cellular functions, including the cell cycle, differentiation, cancer, neurodegeneration, DNA damage response, and apoptosis (Lu et al., 1996
; Liou et al., 2003
; Lu, 2004
; Thorpe et al., 2004
; Wulf et al., 2005
). Pin1 is localized in nuclei of most cells, where it modulates the functions of several mitotic proteins such as cyclin D1, cdc2, and transcription factors such as p53, c-Jun N-terminal kinase (c-JNK),
-catenin, and tau, a regulator of microtubule dynamics in mitosis (Lu et al., 1996
). Pin1 also regulates structure and function of RNA polymerase II during transcription (Xu et al., 2003
). It is overexpressed in transformed cells and is thus implicated in oncogenesis (Bao et al., 2004
).
In neurons, however, Pin1 is distributed in both nucleus and cytoplasm and increases during neuronal differentiation, and its expression correlates with the phosphorylation of tau, although all potential phosphorylation sites are not equally phosphorylated (Hamdane et al., 2006
). Phosphorylation at one Pin1 binding site Thr 231, which activates tau dephosphorylation in vitro (Lu et al., 1999
; Zhou et al., 2000
), is down-regulated during differentiation, suggesting that Pin1 regulates tau dephosphorylation by inducing conformational changes, at least at this site. In vitro, Pin1 specifically binds to tau proteins that are phosphorylated on their Thr 231 residue (Wintjens et al., 2001
; Lu et al., 2002
; Hamdane et al., 2006
). Significantly, the Thr 231 phosphoepitope of tau is exclusively found in mitotic cells, is a marker of abnormal tau hyperphosphorylation (Hamdane et al., 2003
), and is specifically detected in a conformation-dependent manner in neurofibrillary tangles (NFT) in AD brains, thus linking Pin1 to neurodegeneration (Lu et al., 1999
; Augustinack et al., 2002a
). This link was dramatically confirmed by Pin1-null mice, which display age-dependent motor and behaviorial defects, tau pathologies, and neuronal loss (Liou et al., 2003
), results that suggest that Pin1 protects against neurodegeneration, but how? One suggestion is based on a model of neurodegeneration stating that stressed postmitotic neurons (e.g., exposed to
-amyloid peptides) are abnormally induced to enter the cell cycle, leading to the appearance of mitotic proteins (including p-T231-tau), resulting in neuronal apoptosis (Neve and McPhie, 2006
). The protective role of Pin1 is to alter the phosphorylated conformation of mitotic proteins to enable dephosphorylation of tau at Thr 231 by exposing the site to PP2A phosphatase activity. The absence of Pin1 in null mice or the low soluble Pin1 levels seen in AD brains, prevents phosphatase action at the hyperphosphorylated tau sites (reviewed in Lu, 2004
).
Like tau, neurofilaments contain many S/T-P phosphate acceptor sites that are targeted by several different kinases and phosphatases. In contrast to tau, however, NFs, particularly NF-H, are enriched with numerous KSP repeat motifs in the tail domain (43–100 depending on species), sites for proline-directed kinase phosphorylation. Phosphorylation of these tail domain sites is normally restricted to the axonal compartment as NF polymers are assembled and transported along the axon and results in extension of sidearms that interact with other NFs, NF-associated proteins, and microtubules to form a stable, structural lattice. We suggest that Pin1, distributed throughout the neuron, is directly involved in modulating NF phosphorylation to affect its distribution in the cell body and axon. By deregulating the system via induction of neurodegeneration (glutamate excitotoxcity), to evoke NF pathologies resembling those seen in ALS, we have been able to identify a role for Pin1 in the regulation of NF phosphorylation.
| MATERIALS AND METHODS |
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Antibodies
Pin1 antibodies were obtained from Cell Signaling Technologies (Beverly, MA) and Oncogene Research Products (Boston, MA) and used for Western blotting (1:1000) and immunohistochemistry (1:100), respectively. RT-97 antibody was provided by Drs. Ralph Nixon and Veeranna (Nathan Kline Institute, Orangeburg, NY) and used at 1:500–1000 dilutions for immunofluorescence and 1:5000 dilution for Western blotting. SMI31 was obtained from Covance (Princeton, NJ) and used at 1:500 for immunofluorescence and 1:2500 for Western blotting. Anti-tubulin antibody (clone DM1A), total NF (clone N52), and DAPI (Sigma-Aldrich, St. Louis, MO) were used at 1:10000 for Western blotting and 1:1000 for nuclear counterstaining, respectively.
Plasmids and Pin1-Small Interfering RNA
Dominant-negative Pin1 was produced by making a point mutation to produce an alanine at serine 16, using the Quikchange Mutagenesis kit (Stratagene, La Jolla, CA) according to the manufacturer's instructions. Transfection of wild-type and DN-Pin1 constructs were performed using Lipofectamine 2000 (Invitrogen, Carlsbad, CA) according to the manufacturer's instructions. Wild-type Pin1 was cloned into pGEX-5X-1 obtained from Amersham Biosciences (Piscataway, NJ) for glutathione S-transferase (GST) expression studies. Control nonsilencing and Pin1-small interfering RNA (siRNAs; silencing) were designed as follows. Control siRNA (nonsilencing) sense and antisense sequences were as follows: 5'-r(UUUUCCGAACGUGUCACGU)d(TT)-3' and 5'-r(ACGUGACACGUUCGGAGAA)d(TT)-3', respectively. Pin1 siRNA (silencing) sense and antisense sequences were as follows: 5'-r(GCUCAGGCCGAGUGUACUA)dTdT-3' and 5'-r(UAGUACACUCGGCCUGAGC)dTdT-3', respectively. The sense and antisense strands were annealed to create the double-stranded siRNA at a 20 µM concentration. Control siRNA and Pin1 siRNA were dissolved in suspension buffer to obtain a 20 µM solution and heated at 90°C for 1 min and then incubated at 37°C for 60 min before transfection. Final concentrations (40 nM) of siRNAs were transfected into embryonic day 18 (E18) primary cortical neurons (5 d in culture [DIC]) using Lipofectamine 2000 reagent according to the manufacturer's instructions. After 48 h the cells were either fixed for immunohistochemical analyses or lysed with lysis buffer for Western blot analyses.
Reagents
5-Hydroxy-1, 4-naphthoquinone (juglone) and L-glutamic acid (glutamate) were purchased from Sigma-Aldrich. Juglone was prepared as described (Chao et al., 2001
) and used at 30 µM in dorsal root ganglion (DRG), and glutamate was used at 0.1 mM and 10 µM for 6 h in cortical neurons and DRG neurons, respectively.
GST-Pin1 Protein Expression and Pulldown Assays
GST and GST-Pin1 were expressed in Escherichia coli and purified according to the manufacturer's instructions (Amersham Biosciences). Purified GST and GST-Pin (20 mg of each) were then used in GST-pulldown assays from rat brain lysates. Rat brain lysates, 10%, were prepared in immunoprecipitation (IP) lysis buffer containing 50 mM Tris-Cl, pH 7.5, 150 mM NaCl, 1% Triton X-100, 1 mM EDTA, 1 mM EGTA, 5 mg/ml leupeptin, 2 mg/ml aprotinin, 5 mg/ml pepstatin, and 1 mM phenylmethylsulfonyl fluoride (PMSF) described previously (Kesavapany et al., 2004
). GST and GST-Pin1 were incubated with the lysates overnight at 4°C, washed three times, and then separated by SDS-PAGE on 4–20% acrylamide gels. Gels were stained with Coomassie and destained, and differential bands were excised and sent for mass spectrometric identification. For Western blotting analyses, samples were transferred onto nitrocellulose and phosphorylated neurofilament-H (p-NF-H) was detected using RT-97 antibody.
Mass Spectroscopic Identification
Excised Coomassie-stained and destained gel slices were subjected to in-gel tryptic digestion, and then dried digests were processed as previously described (Jaffe et al., 2004
).
Co-IP
Rat brain was homogenized in ice-cold IP lysis buffer (see above) using 40 strokes of a Dounce homogenizer on ice. Homogenates were centrifuged for 30 min at 4°C at 14,000 rpm. Supernatants were precleared using protein A-Sepharose beads (Sigma), and 500 µg of total protein was used in IP experiments using the polyclonal Pin1 antibody and immunoglobulin was captured using protein A-Sepharose beads overnight at 4°C. After three washes with IP lysis buffer, immunoprecipitates were heated in 2x SDS sample buffer, separated by SDS-PAGE and transferred onto nitrocellulose membranes for Western blotting analyses. Phosphorylated NF-H was immunodetected using RT-97 antibody. Co-IPs of similarly prepared rat brain lysates using RT-97 antibody specific for phosphorylated NF-H were also carried out to detect Pin1 with the Pin1 antibody.
SDS-PAGE and Sample Preparation
Total homogenates, 10%, of spinal cord were made as described previously (Kesavapany et al., 2004
). Samples were heated for 10 min at 95°C and then aliquoted and frozen at –80°C. Western blots were prepared from equal volumes of total lysates. Soluble lysates were produced by using 40 strokes of a Dounce homogenizer in ice-cold IP lysis buffer containing 50 mM Tris-Cl, pH 7.5, 150 mM NaCl, 1% Triton X-100, 1 mM EDTA, 1 mM EGTA, 5 mg/ml leupeptin, 2 mg/ml aprotinin, 5 mg/ml pepstatin, and 1 mM PMSF, incubated for 20 min on ice, and then centrifuged at 14,000 rpm for 20 min to obtain the soluble supernatant. Protein concentrations for soluble lysates were determined with the bicinchoninic acid assay system (Pierce, Rockford IL). Western blots were obtained from equal amounts of soluble lysates. All neuronal cell lysates were made by scraping the neurons directly into 2x SDS sample buffer and heating at 95°C for 10 min. Protein balancing for total homogenates and confirmation of protein loading was achieved through immunodetection of tubulin. Once cooled, samples were separated by SDS-PAGE and processed for Western blotting analyses. Signals were scanned and densitometrically measured using a GS800 scanner and its accompanying Quantity One program (Bio-Rad, Hercules, CA).
ALS and AD Tissue
Closely matched, age and postmortem time, control, and ALS-affected spinal cord sections and spinal cord tissues were obtained from the Robarts Research Institute Brain Bank (London ONT, Canada). Matched control and AD tissue were obtained from the Harvard Brain Tissue Resource Center. Samples that were matched in terms of region (Brodmann layer), age, and postmortem time were used to produce total and soluble lysates (described earlier).
Immunohistochemical Staining of Spinal Cord Sections
Paraffin-embedded control and ALS-affected spinal cord sections were prepared for immunostaining through xylene treatment and gradual rehydration with 95–75% ethanol. Sections were blocked and then incubated with primary antibodies overnight at 4°C in 0.6% Triton X-100/3% bovine serum albumin (Sigma). Secondary antibodies were incubated for 1 h at room temperature in the dark, and slides were coverslipped using GelMount (Biomeda, Foster City, CA). Images were captured with a 20x objective on a Zeiss LSM510 using LSM Image Software managed with Adobe Photoshop.
Primary rat DRG Cultures and Treatments
Pregnant female rats or mice were killed, and embryos were removed from the uterus at E15, as previously described (Olah et al., 2001
). DRG neurons were plated onto poly-lysine–coated glass coverslips and grown for 4 d before treatment ± juglone/glutamate. For sequential treatment, neurons were first pretreated with 30 µM juglone for 3 h and then with 10 µM glutamate for 6 h. Two homogenate preparations were prepared: a total homogenate where neurons were harvested directly into SDS sample buffer and heated before processing and a soluble homogenate (described above) to determine soluble levels of Pin1.
Primary Rat Cortical Neuron Cultures and Treatments
E16–18 rat cortical neuron cultures were produced as described previously (Kesavapany et al., 2004
). Typically, neurons were transfected after 3DIC, incubated for 5 h, and then treated with glutamate. Neurons were grown for 7 d before treatment + juglone and glutamate. For sequential treatment, neurons were first pretreated with 30 µM juglone for 3 h and then with 0.1 mM glutamate for 6 h. Two homogenate preparations were prepared: a total homogenate where neurons were harvested directly into SDS sample buffer and heated before processing and a soluble lysate to determine soluble levels of Pin1 prepared with IP lysis buffer described earlier.
Immunocytochemical Staining of Neuronal Cultures
Primary rat cortical and DRG neurons were plated on poly-lysine–coated glass coverslips and processed for immunocytochemistry as previously described (Kesavapany et al., 2004
). Coverslips were mounted using GelMount (Biomeda, Foster City, CA). In situ cytotoxicity kits were obtained from Roche (Indianapolis, IN) and TUNEL (terminal deoxynucleotidyl transferase–mediated nick end labeling) staining was performed according to the manufacturer's instructions before immunocytochemistry. Images were captured with an oil immersion 63x objective on a Zeiss LSM510 using LSM Image Software managed with Adobe Photoshop (San Jose, CA).
Preparation of Molecular Models
Molecular models were prepared with the aid of DeepView (Guex and Peitsch, 1997). The NF-H tail domain has an amino acid composition characteristic of "intrinsically unstructured" protein (Fink, 2005
). This was confirmed for the C-terminal 600 residues of human NF-H by applying the IUPred algorithm via the website, http://iupred.enzim.hu/ (Dosztanyi et al., 2005
). Because nearly all the proline-associated serines in this NF-H domain become phosphorylated in mature axons (Jaffe et al., 1998a
,b
), these serines evidently become accessible to kinases during this processing. Thus it seems reasonable to model each unphosphorylated repeat unit as a loop centered on the S-P residues. Accordingly, in constructing Figure 8, the DeepView loop-building tool was applied to each repeat unit as an extended peptide, and then these were ligated and minimized. The cis transition of SP2 was modeled by rotating the S-P
torsion by 180° while leaving the N-terminal residues stationary.
| RESULTS |
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Glutamate Toxicity in DRG Neurons Produces Accumulations of p-NF-H and Pin1
DRG neuronal cultures have been used as models for the neurotoxicity seen in ALS (Durham et al., 1997
). DRG neurons subjected to excitotoxic or oxidative stress exhibit increased kinase activity and accumulate p-NF-H in their cell bodies (Shea et al., 2004
). On glutamate treatment, we observed an approximate twofold increase in p-NF-H levels relative to untreated neurons. When DRG neurons were treated with juglone, a specific Pin1 inhibitor (Lee et al., 2001
), before glutamate exposure, NF-H phosphorylation remained at untreated levels. Pin1 levels were unchanged by glutamate treatment (Figure 4A). DRG neurons, identically treated, were also fixed and immunostained (Figure 4B, a–i). Though Pin1 was expressed in cell body and neurites in untreated DRG neurons, p-NF-H was confined to their processes (Figure 4B, a–c). Glutamate treatment caused a marked increase in cell body staining of p-NF-H, where it colocalized with Pin1 with a concomitant loss of Pin1 expression in neurites (Figure 4B, d–f). Juglone treatment before glutamate treatment, abolished the cell body accumulation of p-NF-H (Figure 4B, g–i). We used different glutamate treatment concentrations in the cortical and DRG neuron experiments because cortical neurons have a higher tolerance to glutamate exposure; we treated cortical neurons with 0.1 mM glutamate and DRG neurons, which are more sensitive to glutamate, with 10 µM glutamate (Crawford et al., 2000
; Lee et al., 2001
).
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15%, approaching numbers comparable to nontreated neurons (Figure 7A). Representative TUNEL images are shown, whereas quantitation in the bar graph represents TUNEL-positive counts from four separate experiments, where 10 independent fields were counted (Figure 7B). In glutamate-treated cortical and DRG neurons p-NF-H was also elevated with no changes in soluble or total Pin1 levels. We chose to use a 6-h treatment of glutamate, because this produced extensive accumulation of p-NF-H accompanied by neuronal death. When treatment times were extended, the percentage of TUNEL-positive neurons increased but neurons also began to detach from the coverslips (data not shown).
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| DISCUSSION |
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A model of its role in regulating tau phosphorylation in stressed neurons has been suggested. Glutamate stress, surprisingly, induces tau dephosphorylation in cortical neurons containing phosphorylated fetal tau, whereas p-tau abnormally accumulates in cell bodies (Davis et al., 1995
). Oxidative stress also induces tau dephosphorylation with specific phosphorylated epitopes exhibiting different levels of dephosphorylation (Galas et al., 2006
). Significantly, there is no change in Pin1 levels. Juglone, the Pin1 inhibitor, partially prevents dephosphorylation of the Thr 231 epitope, whereas in a Pin1 knockout, stress-induced dephosphorylation at Thr 231 is prevented without affecting dephosphorylation at other sites (Galas et al., 2006
). This suggests that Pin1 regulates tau phosphorylation by targeting dephosphorylation of a key binding site responding to unbalanced kinase:phosphatase activities. This may result from cis-trans isomerization and induced conformational changes that expose other phosphorylated tau sites to phosphatases. It is important to acknowledge that in addition to groups implicating Pin1 reductions with increased prevalence to AD and other dementias, Pin1 presence has also been found to be involved in disease and apoptotic processes. A recent report showed that Pin1 activity enhanced the formation of Lewy bodies, a pathological hallmark found in PD and overexpression of DN-Pin1 inhibited formation of these inclusions (Ryo et al., 2006
). Thus, Pin1 activity impacts target proteins with distinct results in different neurodegenerative diseases. Another recent report showed that Pin1 is involved in mitochondrial mediated apoptosis. The activation of c-Jun N-terminal kinase (JNK) signaling induced the disassociation of Pin1 from the neuron-specific JNK scaffold protein JIP3, which promotes the binding of Pin1 with phosphorylated BH3-only protein BIMEL. This stabilized BIMEL and activated the mitochondrial apoptotic machinery (Becker and Bonni, 2006
). Whether this process is involved in neurodegeneration remains to be seen.
Because NF-H possesses numerous KSP repeat phosphate acceptor sites in the tail domain, which are prime targets of several proline-dependent kinases, Pin1 regulation of these sites may differ fundamentally from its regulation of the one important site in tau, Thr 231. Interpretation of our data suggests a novel model in which Pin1 is a key player in the topographic regulation of NF phosphorylation (Pant and Veeranna, 1995
; Grant et al., 2006
). According to the model, NF monomers and oligomers within the cell body are transiently prevented from polymerizing into filaments by phosphorylation of specific NF head domain Ser residues by protein kinase A (PKA) and PKC (Sihag et al., 1988
; Hisanaga et al., 1994
). Phosphorylation of head domain sites in a head-to-tail tetramer (and higher) NF-subunit oligomers may interact with exposed tail domain KSP sites to block initiation of their phosphorylation. This is supported, in part, by the observation that PKA phosphorylation of NF-M head domain sites in rat cortical neurons inhibits phosphorylation of tail domain KSP sites (Zheng et al., 2003
). Hence, though Pin1 is present and presumably active in neuronal cell bodies (Hamdane et al., 2006
), phosphorylated S/T-P target sites are unavailable for Pin1 binding. Within the axon initial segment, however, as NF oligomers bind to microtubules (MTs) for transport into the axon, S/T phosphatases are activated, the head domain sites are dephosphorylated and NF polymerization begins. During axonal transport tail domain sites thus become accessible to proline-directed kinases and as phosphorylation proceeds, the tails extend, cross-linking adjacent NFs and interacting with microtubules. Pin1 now plays a major role within the axon, by inducing cis-trans isomerizations of critical p-S/T-P sites, driving the tail domains to extend and become stabilized. The details of Pin1 interactions with axonal pNF are described below; meanwhile, we shall focus on the destabilizing effect of stress on the processing of NFs within the cell body.
Glutamate excitoxicity evokes an influx of Ca2+ that activates several proline-directed kinases. Cdk5, for example, is hyperactivated when calpain, a calcium-dependent protease, cleaves p35 to produce a more active and stable p25 (Lee et al., 2000
). Additionally, Erk1/2 and other stress-activated kinases such as SAP/JNK and p38 are also elevated in response to ischemic and excitotoxic stimuli (Zheng et al., 2003
). The kinase:phosphatase activity ratio in the cell body is altered to favor proline-directed kinases. Moreover, the influx of Ca2+ activates calcineurin, a phosphatase that may dephosphorylate NF head domain p-Ser sites and induce abnormal NF polymerization within the cell body. Phosphorylated tail domain multiple KSP repeats are exposed evoking Pin1 binding and promoting sustained, aberrant, perikaryal accumulation of p-NF-H. This, in turn, inhibits axonal transport that leads to cell death. Inhibition of Pin1 activity with juglone, a dominant negative form of Pin1 or siRNA-mediated reduction of the levels of Pin1, prevent a sustained extension and phosphorylation of C-terminal tail domain KSP repeats and stops p-NF-H accumulation in the cell body.
An alternative mechanism may involve Pin1 directly. Because Pin1 activity can be switched off by PKA phosphorylation at Ser16 (Lu et al., 2002
), this regulation may control NF phosphorylation within neuronal perikarya during neurofilament protein synthesis. Some forms of AKAP, which can bind both PKA and phosphatases such as calcineurin, function to regulate their relative activities in relation to presynaptic AMPA receptor insertion (Houslay, 2006
) and perhaps function similarly with regard to neurofilament phosphorylation. Thus "stress conditions," such as glutamate treatment, may turn off PKA in response to increased Ca2+ influx and aberrantly activate Pin1.
If there is a physiological role for Pin1 in the axonal compartment, it may incorporate these facts: 1) Pin1 only acts after phosphorylation at (S/T)-P repeat sites, 2) proline-directed kinases will not phosphorylate serines or threonines that are cis-bonded to proline residues, and 3) NF-H tail domains, which contain
43/44 S/T-P repeat units, are not detectably phosphorylated in normal neuronal perikarya, and yet become extensively phosphorylated during axonal transport and assembly into neurofilaments. Figure 8 illustrates one way that Pin1 may participate in the normal process of NFH tail domain phosphorylation in axons. Although there is little information about the tertiary structure of this domain, it appears to be unstructured, (i.e., does not contain neither sheets nor helices; Fink, 2005
). We assume, for purposes of discussion, that the unphosphorylated tail domain is globular, with only the most C-terminal repeats on its surface accessible to kinases, whereas more N-terminal repeat units are sterically sequestered within the core. However, the negative charges introduced by multiple proline-directed S/T-phosphorylations will cause the repeat units to unfold and allow kinases access to adjacent repeat units, except at certain sites where instead, phosphorylation induces cis isomerization of the p-S/T-P bond. We propose that in such cases and in the absence of active Pin1, the cis bond not only blocks kinase action, but also produces a local conformation that blocks access to new phosphorylation sites (Figure 8B, 3). When active Pin1 is available, however, its binding to the pS/T-P sites will regenerate the trans isomers, induce a conformational change, and expose adjacent S/T-P sites to initiate further kinase action. Because Pin1 can only act on phosphorylated S/T-P sites, one or more phosphorylated cis S/T-P bond must already be present so that Pin1 can isomerize it and cause further unraveling of the tail domain.
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| ACKNOWLEDGMENTS |
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| Footnotes |
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Present address: Yong Loo Lin School of Medicine, Department of Biochemistry, National University of Singapore, 8 Medical Drive, MD7 02-03, Singapore 117597. ![]()
Address correspondence to: Harish C. Pant (panth{at}ninds.nih.gov).
Abbreviations used: Cdk5, cyclin-dependent kinase 5; p-NF-H, phosphorylated neurofilament-H; Pin1, prolyl isomerase 1.
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