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Vol. 19, Issue 3, 1220-1229, March 2008
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Institut de Sciences et Technologies du Médicament de Toulouse, Unité Mixte de Recherche 2587 Centre National de la Recherche Scientifique-Pierre Fabre, 31400 Toulouse, France
Submitted December 21, 2006;
Revised November 26, 2007;
Accepted December 12, 2007
Monitoring Editor: Yixian Zheng
| ABSTRACT |
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| INTRODUCTION |
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-TuRCs). These consist of gamma-tubulin and additional subunits, named gamma complex proteins (GCPs; Zheng et al., 1995To understand the role of the proteasome at the centrosome, we examined changes in the pericentriolar material after proteasome inhibition in interphase cells. Here, we report that specific proteasome inhibitors induce accumulation of several centrosome proteins at the pericentriolar material. Blocking proteasome function impaired the ability of the centrosome to form regular microtubule asters.
| MATERIALS AND METHODS |
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Antibodies and Reagents
Primary antibodies used in this study were: anti-gamma-tubulin (mouse GTU-88, Sigma Aldrich, St. Louis, MO; or rabbit serum R75; Julian et al., 1993
), anti-
-tubulin (mouse T-5168, Sigma Aldrich), anti-PCM1 rabbit serum (Dammermann and Merdes, 2002
), a rabbit polyclonal antibody directed against NEDD1 peptide (279–660; Haren et al., 2006
), mouse anti-pericentrin (Dammermann and Merdes, 2002
), and rabbit anti-ninein. Mouse antibodies directed to the Rpn7 subunit of the 19S proteasome and the beta2 (MCP168) and the beta7 (MCP205) subunits of the 20S proteasome were purchased from Affiniti Research/BIOMOL International (Exeter, UK). Rabbit polyclonal antibody P1663 against clathrin heavy chain was purchased from Cell Signaling (Beverly, MA). MG-115, lactacystin (Craiu et al., 1997
), and epoxomicin were purchased from Calbiochem (La Jolla, CA). Bortezomib a selective dipeptidyl boronic acid proteasome inhibitor (PS-341) was prepared according to previously reported methods (Adams et al., 1998
). Nocodazole and taxol were purchased from Sigma Aldrich. Stock solutions of all drugs were prepared at a concentration of 10 mM in DMSO.
Protein Extracts and Immunoblotting
HeLa cells grown on 100-mm dishes were scraped and washed twice in PBS. Total cell lysates were prepared from control and proteasome inhibitor-treated cells as described (Nekrep et al., 2000
). To isolate soluble and insoluble fractions, the cell pellet was resuspended in lysis buffer (50 mM HEPES, pH 7.4, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS) containing 0.1 mg/ml phosphatase and protease inhibitors (Sigma). Cells were lysed by incubation on ice for 30 min with repeated mixing and cleared by centrifugation, and detergent-soluble fractions were collected. The pellet (detergent-insoluble fraction) was resuspended in 60 mM Tris-HCl, 2 µM SDS, 2.5% 2-mercapthoethanol, and protease inhibitors and sonicated for 20 min. The amount of proteins was quantified with BCA (bicinchoninic acid) assay kit (Bio-Rad Laboratories, Hercules, CA). Equivalent amounts of proteins from both fractions were then resolved by 10% SDS-PAGE and analyzed by Western blotting with specific antibodies, using Odyssey buffers (Odyssey, ScienceTec, Les Ulis, France). After washing under stringent conditions, immune complexes were revealed with Alexa Fluor 680–labeled secondary anti-mouse antibodies (Odyssey, ScienceTec) and visualized by a Li-Cor Odyssey infrared imaging system (700-nm channel; Lincoln, NE).
Two-Dimensional Gel Electrophoresis
Two-dimensional gel electrophoresis (2D gel) was performed according to the protocol provided by the manufacturer of the apparatus (Amersham Pharmacia Biosciences, Piscataway, NJ). Cell extracts were trichloroacetic acid (TCA) precipitated and rehydrated in 200 µl of rehydration buffer for 2 h. Samples were loaded on an 18-cm Immobiline DryStrip, pH 3–10 NL (nonlinear immobilized pH gradient, Amersham Biosciences). Strips were then subjected to passive rehydration for 8 h at 50 µV for each strip on a Multiphor II electrophoresis unit (Amersham Biosciences). After a rehydration step, samples were subjected to separation at 50 V for 6 h, 50–8000 V for 2 h, and 8000 V for an additional 12 h. After equilibration, a total of 70,000 Vh, immobilized pH gradient strips were further processed for second-dimension SDS-PAGE electrophoresis on ExcelGel 2D Homogeneous 12.5%. The resulting gels were immunoblotted to nitrocellulose and processed for Western blot with specific antibody as above.
Immunostaining and Fluorescence Microscopy
Cells grown on coverslips were fixed in methanol at –20°C for 10 min. The cells were then washed three times (5 min each) in PBS and processed for immunostaining using conventional protocols. Alexa-488– or Alexa-568–conjugated secondary antibodies (Molecular Probes, Eugene, OR) were used for detection. Immunofluorescence was analyzed using a Zeiss Axiovert microscope (Thornwood, NY), with 63x/1.4 NA or 100x/1.4 NA objectives, or a Zeiss AxioImager Z1. Z-series were acquired with an Axiocam MRm camera and Axiovision software (Zeiss) for the Axiovert microscope or with a Hamamatsu digital CCD camera (Bridgewater, NJ) and Visilog software (Noesis, Aptos, CA) for the AxioImager microscope. Quantification of fluorescence intensity of centrosomal gamma-tubulin staining was performed using Visilog software. Products of pixel area and pixel intensity of gamma-tubulin at the centrosome are given as relative units after cytoplasmic background substration. Deconvolved immunofluorescence images were obtained with a Deltavision RT workstation (Applied Precision, Issaquah, WA), using the manufacturer's software.
Electron Microscopy
HeLa cells were fixed with 2.5% glutaraldehyde in PHEM buffer (60 mM PIPES, pH 6.9, 25 mM HEPES, 1 mM EGTA, 2 mM MgCl2, pH 7.0). Fixed cells were scraped and pelleted and subsequently were postfixed in 2% osmium tetroxide. After dehydration, cells were embedded in araldite, serially sectioned, and contrasted with uranyl acetate and lead citrate. For immunoelectron microscopy of gamma-tubulin, cells were embedded in LR White, and sections were incubated with monoclonal anti-gamma-tubulin (GTU-88, Sigma-Aldrich) for 3 h at 37°C, followed by gold-conjugated secondary antibody (Molecular Probes) for 90 min. Pictures were taken with a Philips 300 electron microscope (Mahwah, NJ). The density of gold particles was quantified on the sections. Immunoelectron microscopy of microtubules was performed on human osteosarcoma cells (U2OS) after 16-h treatment with 1 µM PS-341 or epoxomicin, followed by microtubule staining with monoclonal anti-
-tubulin, secondary antibody labeled with ultrasmall gold, and silver enhancement, exactly as described in Merdes and De Mey (1990)
.
Centrosome Isolation
Centrosome enriched fractions were isolated using adaptations of previously described protocols (Mitchison and Kirschner, 1984
; Bornens et al., 1987
). Briefly, 109 cells were treated with 33 µM nocodazole and 1 µg/ml cytochalasin D for 1 h at 37°C. Cells were lysed in 1 mM Tris-HCl, pH 8.0, 0.1% β-mercaptoethanol, 0.5% NP-40, and 0.5 mM MgCl2 in the presence of protease inhibitor mix. The centrosomes were purified by sucrose gradient. Fractions (50 µl) were collected and were analyzed by Western blotting using antibodies against gamma-tubulin, centrin, and the proteasome.
Proteasome Activity Assay
To monitor the chymotrypsin-like (CTL) and caspase-like enzymatic activities of the proteasome, centrosomes were purified by sucrose gradient as above. Twenty microliters of collected fractions (250 µl) were assayed according to standard protocols (Brown and Monaco, 1993
). Briefly, proteins were diluted in a reaction buffer (5 mM HEPES, pH 8, 0.05 mM DTT) and preincubated in 384 well microtiter black plate (Greiner, Germany) with or without the proteasome inhibitor lactacystin (50 µM) for 15 min at 37°C. Reactions were then incubated for an additional 60 min at 37°C with 100 µM of the 7-amido-4-methylcoumarin (AMC)-coupled fluorogenic substrate in 100 mM HEPES, pH 7.6, in the dark. The fluorogenic peptides N-succinyl-Leu-Leu-Val-Tyr-AMC (Suc-LLVY-AMC) and Z-Leu-Leu-Glu-AMC (Z-LLE-AMC) were used to quantify CTL and caspase-like activity, respectively. Hydrolysis of substrates was monitored by fluorescence measurement of the liberated AMC at 380/440-nm excitation/emission (Hoffman et al., 1992
; Oberdorf et al., 2001
) on a microtiter plate reader (Synergy HT, Biotek Instruments, Burlington, VT). All peptides were purchased from Calbiochem (Nottingham, United Kingdom). The emitted fluorescence plotted against the fraction number shows the proteasome activity in the different fractions.
Nondenaturing PAGE
For in-gel assay, fractions enriched in centrosomes were resolved on a 4% nondenaturing polyacrylamide gel in 1x Tris-borate-EDTA buffer and overlaid by 2% stacking gel in the same buffer. Gels were run at 20 mA for 4 h at 4°C. The running buffer was the same as the gel buffer but without acrylamide. Stacking was removed, and gels were then incubated in 10 ml of reaction buffer (30 mM Tris-HCl, pH 7.8, 5 mM MgCl2, 10 mM KCl, 0.5 mM DTT, and 2 mM ATP) containing 0.2 mM of Suc-LLVY-AMC fluorogenic peptide for 1 h 30 min at 37°C (Hoffman et al., 1992
). Purified 20S and 26S proteasomes were included as positive controls. The gels were exposed and photographed using a UV transilluminator (Gel Doc 1000, Bio-Rad, Hercules, CA). The 26S proteasome was purchased from Calbiochem. The 20S proteasome was purified by affinity chromatography from human erythrocytes (Claverol et al., 2002
).
Microtubule Nucleation and Depolymerization Assays
Cells grown on glass coverslips were treated with PS-341 (1 µM) 16 h before performance of microtubule nucleation assays. Cell culture plates were incubated on ice for at least 1 h to depolymerize microtubules. To allow microtubule regrowth, coverslips were dipped in warm (37°C) tissue culture medium containing 10% FBS. Regrowth was stopped at indicated time points. Cells were extracted with 0.5% Triton X-100, fixed in 4% paraformaldehyde in PHEM buffer (60 mM PIPES, pH 6.9, 25 mM HEPES, 1 mM EGTA, 2 mM MgCl2, pH 7.0). Cells and immunofluorescence analysis was performed using standard protocols.
| RESULTS |
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300 nm. Because the peptide aldehyde inhibitor MG-115 can also block proteases such as calpain that are not associated with the proteasome (Kim et al., 2004
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Proteasome Inhibition Leads to the Accrual of Many Different Centrosomal Proteins
Proteins at the centrosome can be divided into different functional groups. One group of proteins forms complexes with gamma-tubulin and is involved in microtubule nucleation, such as gamma-tubulin itself, proteins of the GCP superfamily, and NEDD1. To test their behavior after proteasome inhibition with the inhibitor PS-341, we followed the localization of GCP4 and NEDD1 in addition to gamma-tubulin. All these proteins show increased accumulation at the pericentriolar material in response to proteasome inhibition (Figure 2A). A different group of proteins has been suggested to form filamentous networks, providing a scaffold of the pericentriolar material, such as pericentrin and ninein. These proteins are equally found enriched at the pericentriolar material after proteasome inhibition (Figure 2B). Other proteins, such as PCM-1 and dynactin have been suggested to play roles in centrosome assembly and protein transport to the pericentriolar material (Dammermann and Merdes, 2002
; Kubo and Tsukita, 2003
).
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To test whether proteasome inhibition affects primarily proteins of the centrosome or whether it leads to an unspecific accumulation of all types of proteins, we followed the localization of the membrane skeleton protein clathrin in treated cells. In our experiments, we did not observe any significant accumulation of clathrin to the centrosome in cells after proteasome inhibition (Figure 2D). This indicates that protein accumulation at the centrosome as induced by proteasome inhibitors is selective and does not affect all classes of proteins in the cell. Because proteasome inhibition leads to cell cycle arrest in G2 (Supplementary Figure S2A; Wagenknecht et al., 1999
; Ling et al., 2002
), we tested whether this arrest correlated with centriole duplication, by examining HeLa cells that stably expressed centrin-GFP as a marker of the centrioles (Paoletti et al., 1996
; Piel et al., 2000
). In untreated HeLa cells expressing GFP-centrin, two spots that colocalize with gamma-tubulin were detected in most cells (82%, n = 815), indicating the presence of two centrioles in G1 phase. In contrast, after proteasome inhibition four or more centrin spots were detected in 99% of the cells (n = 521), and these spots were often found surrounded by a halo of accumulated centrin (Figure 2E). This indicates that proteasome inhibition leading to G2 arrest does not prevent centriole duplication in the preceding S-phase.
Accumulation of Centrosome Proteins upon Proteasome Inhibition Does Not Require Intact Microtubules
Because several proteins such as pericentrin or ninein assemble at the pericentriolar material after microtubule-dependent transport toward the minus end (Purohit et al., 1999
; Dammermann and Merdes, 2002
), we wanted to test whether the protein accumulation seen after proteasome inhibition required microtubule-dependent transport and an intact microtubule network. We therefore depolymerized microtubules by treatment with 1 µM nocodazole for 6–8 h, before adding the proteasome inhibitor PS-341 at 1 µM and continuing the incubation in the presence of nocodazole for an additional 16 h. Microtubule depolymerization was confirmed by immunostaining with an anti-
-tubulin antibody (Figure 3A, nocodazole). Despite the absence of microtubules, proteasome inhibition still induced accumulation of gamma-tubulin to the same degree as in cells with an intact microtubule network, as determined by measuring pixel intensity in the pericentriolar area (Figure 3A). We observed a similar accumulation for the protein PCM-1 (Figure 3B). Because we obtained similar data when HeLa cells were treated with the microtubule-stabilizing drug taxol before inhibition of proteasomes, we concluded that the accumulation of gamma-tubulin and PCM1 at the pericentriolar material is independent of microtubules, microtubule dynamics, or microtubule-dependent transport.
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| DISCUSSION |
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We considered several possibilities to explain the observed phenotypes: 1) Proteasome inhibition leads to an accumulation of cells in G2 phase, as shown previously (Wagenknecht et al., 1999
; Ling et al., 2002
). The observed concentration of centrosome proteins might therefore reflect cell cycle–dependent maturation of the centrosome. However, the finding that treated cells are defective in nucleating and anchoring microtubules at the centrosome cannot be explained by simple cell cycle arrest, and different drugs that lead to cell cycle arrest in G2 by inducing DNA damage fail to induce centrosome protein accumulation. 2) Proteasome inhibition interferes with proteins involved in microtubule organization or microtubule-dependent transport. This may cause unspecific aggregation of proteins at the center of the cell. However, although we cannot rule out indirect effects of proteasome inhibition, we think that microtubule-dependent mechanisms are an unlikely explanation for the observed phenotypes because our experiments with the microtubule inhibitor nocodazole indicated that centrosome protein accumulation occurred independently of microtubules. 3) Proteasome inhibition affects the turnover of centrosome proteins and might therefore increase the cytoplasmic levels of these proteins, leading to ectopic nucleation of microtubules in the cytoplasm and competition with centrosomal microtubule nucleation. This interpretation would be consistent with our immunofluorescence data showing that both cytoplasmic and centrosomal amounts of gamma-tubulin increase upon proteasome inhibition. Conflicting with this idea, however, we find that the overall levels of gamma-tubulin do not increase significantly after proteasome inhibition. We believe that the increased cytoplasmic signal of gamma-tubulin is due to a shift from soluble to detergent-resistant forms of gamma-tubulin, as supported by our immunoblot analysis of cell fractions (Figure 5B). This raises the question whether the insoluble gamma-tubulin is fully functional. 4) Our favored interpretation is that centrosome protein accumulation after proteasome inhibition is due to failure of degrading polyubiquitylated protein. This is supported by our immunoblotting data showing a ladder of insoluble forms of gamma-tubulin at an increased molecular weight after proteasome inhibition, consistent with polyubiquitylation of gamma-tubulin. Moreover, ubiquitin localization at the centrosome increases in the presence of proteasome inhibitors (this study, as well as Zhao et al., 2003
). Additional support for this idea comes from the detection of ubiquitin ligases such as SCF and parkin at the centrosome (Freed et al., 1999
; Zhao et al., 2003
). Interestingly, mono-ubiquitylation of gamma-tubulin by BRCA1/BARD1 has been documented, although it is unclear whether this triggers proteolysis of gamma-tubulin (Starita et al., 2004
).
Our own data indicate that the accumulation of gamma-tubulin at the centrosome is reversed after the proteasome inhibitors have been removed from the cell, to allow proteasome-dependent degradation to resume. This raises the question about the potential biological role of proteolysis of centrosome proteins. It is possible that proteolysis is necessary upon exit from mitosis, to reduce the amount of centrosome proteins previously accumulated during mitosis, to reestablish a regular microtubule network after spindle disassembly. Furthermore, it is possible that because of the high rate of protein transport and the high dynamics of microtubule assembly and disassembly at the centrosome, a significant number of centrosome proteins may need to be replaced to maintain centrosome function. Replacement may be necessary due to posttranslational modifications to regulate the activity of centrosome protein or due to denaturation of protein. Consistent with this we found that centrosome proteins accumulating upon proteasome inhibition do not lead to increased nucleation or anchoring of microtubules at the pericentriolar material, suggesting that they are not functional, although we cannot exclude that proteasome inhibition impairs microtubule organization without affecting microtubule nucleation. We propose that centrosome proteins that need to be eliminated or replaced are tagged by polyubiquitin, which enables recognition by the proteasome, followed by degradation. This must be in an equilibrium with the translation of new centrosome proteins. Our data provide the first evidence for gamma-tubulin polyubiquitination, suggesting that it is regulated by the proteasome. Because polyubiquitination of proteins may be involved in different cellular function such as localization or protein–protein interactions, further studies will be necessary to understand the role of this posttranslational modification.
For centrosome proteins, ubiquitylation and proteolysis may be a mechanism for regulating their exchange with the cytoplasmic pool, in particular during mitosis when the majority of gamma-tubulin seems to be exchangeable, whereas in interphase, only about half of the centrosome-bound gamma-tubulin exchanges (Khodjakov and Rieder, 1999
). In this context, a study by Ehrhardt and Sluder (2005)
indicated that inhibition of the proteasome during mitosis can lead to excess accumulation of centrosome proteins and subsequent spindle pole fragmentation. Further work including measurement of protein levels, half life, exchange rates in living cells, and characterization of the ubiquitylation status of these proteins will be necessary to better understand the complex relationship between proteasome activity and centrosome assembly and function. We cannot exclude that proteasome inhibition also provokes the accumulation of other, noncentrosome proteins that also affect centrosome function and microtubule organization, either by hindering physically the nucleation or anchoring of microtubules at the centrosome upon accumulation, or indirectly via regulatory pathways. Deregulation of centrosome assembly or microtubule organization might result in aberrant centrosome numbers, which are frequently correlated with genetic instability and human cancer (Pihan et al., 1998
, 2003
; Doxsey, 2005
; Quintyne et al., 2005
). Future studies will reveal whether proteasomes play a role in controlling the homeostasis of centrosome proteins not only during the cell cycle, but also in developmental as well as in oncogenic processes.
| ACKNOWLEDGMENTS |
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| Footnotes |
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* Present address: LBCMCP, UMR5088, CNRS 118 Route de Narbonne Toulouse, 31400 France. ![]()
Present address: Institut National de la Santé et de la Recherche Medicale U563, CPTP, CHU Purpan, BP 3028, 31024 Toulouse Cedex 3, France. ![]()
Address correspondence to: Nabila Jabrane-Ferrat (nabila.jabrane-ferrat{at}toulouse.inserm.fr)
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