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Vol. 19, Issue 4, 1519-1528, April 2008
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, β, and
Isoforms in Myogenic Differentiation

*Department of Biochemistry, The Hong Kong University of Science and Technology, Clearwater Bay, Kowloon, Hong Kong, China;
Dana-Farber Cancer Institute, Boston, MA 02115; and
Department of Pathophysiology, Southern Medical University, Guangzhou 510515, China
Submitted August 22, 2007;
Revised January 14, 2008;
Accepted January 25, 2008
Monitoring Editor: Marianne Bronner-Fraser
| ABSTRACT |
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, β, and
are expressed with distinct expression patterns during differentiation. Knockdown of any of them by small interfering RNA inhibits myogenic differentiation, which suggests that the functions of the three p38 isoforms are not completely redundant. To further elucidate the unique role of each p38 isoform in myogenic differentiation, we individually knocked down one p38 isoform at a time in C2C12 cells, and we compared the whole-genome gene expression profiles by microarrays. We found that some genes are coregulated by all three p38 isoforms, whereas others are uniquely regulated by one particular p38 isoform. Furthermore, several novel p38 target genes (i.e., E2F2, cyclin D3, and WISP1) are found to be required for myogenin expression, which provides a molecular basis to explain why different p38 isoforms are required for myogenic differentiation. | INTRODUCTION |
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Both MRFs and MEF2 are in turn regulated by distinct intracellular signaling pathways. We and others previously showed that the p38 mitogen-activated protein kinase (MAPK)-mediated signaling pathway is indispensable for myogenic differentiation (Cuenda and Cohen, 1999
; Zetser et al., 1999
; Wu et al., 2000b
). Accumulating evidence indicates that p38 MAPK can regulate myogenic differentiation through multiple mechanisms. p38 MAPK directly phosphorylates MEF2 and enhances its transcriptional activity (Han et al., 1997
; Zhao et al., 1999
; Wu et al., 2000a
). p38 MAPK also potently enhances the transcriptional activity of MyoD, which is probably due to an increased association of MyoD with E47, because the latter can be directly phosphorylated by p38 MAPK (Wu et al., 2000b
; Lluis et al., 2005
). Through MyoD and MEF2, which directly bind to the myogenin promoter, p38 MAPK also critically controls the expression of myogenin gene, which is absolutely essential for execution of the differentiation program (Xu et al., 2002
). Recently, p38 MAPK was also found to directly phosphorylate BAF60, a component in the SWI/SNF complex, and to target the complex to selected muscle-specific loci (Simone et al., 2004
). p38 MAPK also facilitates the recruitment of MyoD and MEF2D to selected promoters of muscle-specific genes (Penn et al., 2004
). In addition, p38 MAPK can promote activation of the quiescent muscle satellite cells, and it is also required for proliferation of myoblasts (Jones et al., 2005
).
Four p38 isoforms, namely, p38
, β,
, and
, exist in both the human and mouse genomes (Lluis et al., 2005
; Keren et al., 2006
). So far, many studies on the role of p38 MAPK in myogenic differentiation have relied on the use of SB203580 and SB202190, two pyridinyl imidazole-based small-molecule inhibitors that mainly inhibit p38
and β, but they have no effect on p38
and
(Kumar et al., 1997
). As both SB203580 and SB202190 potently inhibit myogenic differentiation (Cuenda and Cohen, 1999
; Zetser et al., 1999
; Wu et al., 2000b
), it suggests that p38
and
do not play any significant role in myogenic differentiation. In contrast, a previous report showed that p38
is required for myogenic differentiation, because overexpression of a wild-type p38
promotes, whereas that of a dominant-negative form of p38
inhibits myogenic differentiation in C2C12 cells (Lechner et al., 1996
). It remains unclear whether p38
plays any role in myogenic differentiation. To clarify the confusion about the role of p38
and to clearly understand the role of each p38 isoform in myogenic differentiation, we decide to take the short interfering RNA (siRNA) approach by individually knocking down each p38 isoform followed by assessment of the knockdown effect on myogenic differentiation. Except for p38
, which is barely detectable in C2C12 cells, we found that p38
, β, and
are all required for myogenic differentiation. Microarray analysis reveals that some genes are uniquely controlled by a particular p38 isoform, whereas others are coregulated by multiple p38 isoforms. Importantly, several novel p38 target genes were indeed found to be involved in myogenic differentiation, which provides a molecular basis to explain why different p38 MAPKs are required for myogenic differentiation.
| MATERIALS AND METHODS |
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(Cell Signaling Technology, Danvers, MA); anti-p38β (Zymed Laboratories, South San Francisco, CA); and cyclin D3 (C-16), E2F2 (C-20), anti-myogenin (F5D), anti-β-actin (C-2), and anti-hemagglutinin (HA) (Santa Cruz Biotechnology, Santa Cruz, CA). The polyclonal anti-p38
was a kind gift from Dr. M. A. Bogoyevitch (University of Western Australia).
DNA Constructs, Transfection, and Cell Lysis
Expression vectors encoding Flag-p38
, Flag-p38β, and Flag-p38
were kindly provided by Dr. J. Han (Scripps Research Institute, San Diego, CA). G133-luc, 4RE-luc, 3MEF2-luc, and HA-MKK6EE were described previously (Wu et al., 2000b
; Xu et al., 2002
). Flag-Wnt-induced secreted protein 1 (WISP1) was amplified from C2C12-derived cDNAs by polymerase chain reaction (PCR), and it was cloned into pcDNA3.0 vector. Transient transfection was performed by using LipofectAMINE/PLUS reagents following the manufacturer's instructions (Invitrogen, Carlsbad, CA). Cells were lysed in the lysis buffer (50 mM HEPES, pH 7.6, 10% glycerol, 1% Triton X-100, 150 mM NaCl, 1 mM EGTA, 1.5 mM MgCl2, 100 mM NaF, 20 mM biscyclohexylammonium salt, 20 mM β-glycerol phosphate, 2 mM dithiothreitol, 50 µM sodium vanadate, 0.5 mM phenylmethylsulfonyl fluoride, 2 µg/ml aprotinin, 0.5 µg/ml leupeptin, and 0.7 µg/ml pepstatin) for 10 min on ice. Soluble whole cell extracts (WCEs) were prepared by centrifugation to remove cell debris.
RNA Interference (RNAi)
The following siRNAs (only the top-strand sequence is shown) were synthesized at either Dharmacon RNA Technologies (Lafayette, CO) or RIBOBIO (Guangzhou, China): enhanced green fluorescent protein (5'-GCT GAC CCT GAA GTT CAT C-3'); p38
(1#: 5'-AGC CCA GCA ACC TAG CTG T-3'; 2#: 5'-GAG CCT GAC CTA TGA TGA A-3'); p38β (1#: 5'-TGC TGG TAC TAG ACA GCG A-3'; 2#: 5'-ATT GAG CAG TGA GGC ATT G-3'); p38
(1#: 5'-GCA TGA GAC CCT GAG TGA A-3'; 2#: 5'-CCT GTT CTT CGG CTT TCG A-3'); E2F2 (1#: 5'-GCA CCT GAC CGA AGA TAA T-3'; 2#: 5'-GTG ACC TCT TCG ACT CCT A-3'); cyclin D3 (1#: 5'-CCA TTC ACC TGT AGC TTG A-3'; 2#:5'-CTG CTT AGC TTC TGT GAT T-3'); and WISP1 (1#:5'-CGG CAG GTC CTA TGG ATT A-3'; 2#:5'-CCA CTA GAG GAA ACG ACT A-3'). For siRNA transfection, 40–60% confluent C2C12 cells were transfected with 100 nM siRNA by LipofectAMINE 2000 following the manufacturer's instructions. Four to 6 h later, the siRNA-liposome mixtures were removed, and fresh GM was added into cell culture plates. Generally, 24 h after transfection, GM was replaced with DM to induce myogenic differentiation.
Reporter Assays
For reporter assays, 50–70% confluent C2C12 cells in 12-well dishes were cotransfected with 0.5 µg of reporter plasmids and 100 nM siRNA together by LipofectAMINE 2000. All the samples were prepared in duplicate or triplicate. Luciferase activity was determined with a LB9507 luminometer (Berthold Technologies, Bad Wilbad, Germany) by adding 10 µl of WCE to 150 µl of freshly made luciferase buffer [0.4 µM luciferin, 13.3 mM ATP, 0.1 M Tris-HCl, pH 7.8, 1 mM EDTA, pH 8.0, and 10 mM Mg(OAc)2]. Luciferase units were normalized against total protein amount present in each sample determined by Protein Assay Reagent (Bio-Rad, Hercules, CA).
Immunostaining
Cells were first fixed in 4% paraformaldehyde for 15 min, and then they were permeabilized in 0.2% Triton X-100 for 15 min and blocked in 5% bovine serum albumin/phosphate-buffered saline (PBS) for 1 h. Cells were then incubated with the mouse anti-MHC antibody overnight, washed three times with PBS, and reincubated with the rhodamine-conjugated donkey anti-mouse IgG (Jackson ImmunoResearch Laboratories, West Grove, PA) for 1 h. Then, 100 ng/ml 4,6-diamidino-2-phenylindole (DAPI) was then added for another 10 min. Fluorescence microscopy was performed using an Olympus IX70 microscope linked to a charge-coupled device digital camera (Spot RT; Diagnostic Instruments, Sterling Heights, MI).
Gene Expression Analysis by Microarrays
Duplicate C2C12 cells were transfected separately with siRNAs targeting p38
, p38β, p38
, or green fluorescent protein (GFP) (control). Twenty-four hours after transfection, cells were switched to DM for another 18 h before harvest. Total RNA was extracted using TRIzol reagent following the manufacturer's suggestions. The GeneChip Mouse Genome 430 2.0 arrays (Affymetrix, Santa Clara, CA) were used for hybridization, which provide 45,000 probe sets to analyze the expression levels of >39,000 transcripts and variants of mouse genes. The raw data were normalized and analyzed using dChip (www.dchip.org) (Li and Hung Wong, 2001
). To obtain p38 isoform-specific genes, the combined comparisons were carried out. For example, the combined comparison (control vs. p38
and not control vs. p38β and not control vs. p38
) was used to identify genes uniquely regulated by p38
with the criteria of group mean fold change >1.5, absolute group mean differences >20, and p
0.05 for testing equal group means using Student's t test. To identify genes controlled by all three p38 isoforms, we carried out the combined comparison (i.e., control vs. p38
AND control vs. p38β AND control vs. p38
) by using the same criteria as mentioned above.
Semiquantitative Reverse Transcription (RT)-PCR and SYBR Green-based Quantitative (q)RT-PCR
RT-PCR was performed by a two-step method. Briefly, cDNA was generated from 0.5 µg of total RNA by Improm-II reverse transcription system (Promega, Madison, WI) with oligo(dT)15 as a primer according to the manufacturer's instruction. PCR was performed in a reaction of 25 µl containing 40 ng of cDNA. PCR products were analyzed by 2% agarose gel electrophoresis. For qRT-PCR, 2x SYBR Green Supermix from Bio-Rad (Hercules, CA) was added to 25 µl of PCR reactions according to the manufacturer's instructions. Triplicate samples were subjected to qPCR using a Stratagene Mx3000P real-time PCR system with the maximum cycle number of 40. GAPDH was used as an internal control. The relative abundance of genes of interest was calculated after normalized to GAPDH. Three independent batches of RNA samples were used for qRT-PCR analysis, and data were presented as mean ± SD and analyzed by student t test (p < 0.05 was considered statistically significant). Primer pairs used were as follows: myogenin (forward: 5'-GAC TCC CCA CTC CCC ATT CAC ATA-3'; reverse: 5'-GGC GGC AGC TTT ACA AAC AAC ACA-3'); GAPDH (forward: 5'-CCC ACT CTT CCA CCT TCG-3'; reverse: 5'-TCC TTG GAG GCC ATG TAG GCC AT-3'); p38
(forward: 5'-GCA GGG ACC TTC TCA TAG AT-3'; reverse: 5'-GAG GGA TAG CCT CAG ACC-3'); p38β (forward: 5'-CTG CAA GGA AAG GCC CTC-3'; reverse: 5'-CAG GCA ATG CCT CAC TGC-3'); p38
(forward: 5'-GAT TAC TGG GAA GAT CCT G-3'; reverse: 5'-CGT CAC AGA GCC GTC TCC-3'); p38
(forward: 5'-GAC ACT CTT CAA GGG CAA G-3'; reverse: 5'-GCC ATC AAT CAC TGC AGC-3'); E2F2 (forward: 5'-GGT TCC TGT GGT CAG GAG-3'; reverse: 5'-CAG TTC CTG AGG GTG AAC-3'); and WISP1 (forward: 5'-GTC CAG GAC TTC ACA ATT GAG C-3'; reverse: 5'-CCA GGC TTT GCT TCC ATT G-3').
| RESULTS |
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, β, and
Are Expressed in Both Mature Muscles and C2C12 Myogenic Cells and Display Distinct Expression Profiles during Myogenic Differentiation
and β were abundantly expressed in both muscles and many other tissues, whereas p38
was preferentially expressed in muscles (Figure 1A) (Lechner et al., 1996
was barely detectable in muscles, even though it was abundantly expressed in kidney tissues (Figure 1A) (Hu et al., 1999
, β, and
, but not
, were also expressed in C2C12 myogenic cells as judged by RT-PCR (data not shown). To examine the protein levels and expression patterns of p38 isoforms during C2C12 differentiation, we first characterized isoform-specific p38 antibodies. As shown in Figure 1B, each p38 isoform-specific antibody was indeed highly specific for that particular isoform and did not cross-react with other p38 isoforms. Using these isoform-specific antibodies, we found that, during C2C12 differentiation, the levels of p38
remained unchanged and the levels of p38
gradually increased, whereas the levels of p38β gradually decreased (Figure 1C). Myogenin expression was used here as a marker to monitor the progression of differentiation, whereas β-actin levels were used as a loading control.
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and β but not
and
(Kumar et al., 1997
, β, or
were all defective in differentiation as evidenced by reduced expression of myogenin and myosin heavy chain (Figure 2A) and a drastically reduced number of multinucleated myotubes (Figure 2B). Consistently, when C2C12 cells were cotransfected with various siRNAs together with either 4RE-Luc or 3xMEF2-Luc (i.e., the MRF- and MEF2-dependent luciferase reporter genes, respectively), the cells transfected with any of the three p38 isoform-specific siRNAs displayed significantly reduced reporter activities compared with those transfected with the control GFP-siRNA (Figure 2C). Our above-mentioned data showed that p38
, β, and
are all required for normal myogenic differentiation.
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, β, and
) is required for myogenic differentiation, we hypothesized that these p38 isoforms have nonredundant roles in myogenic differentiation. To reveal downstream genes regulated by each p38 isoform, we individually knocked down one particular p38 isoform at a time in C2C12 cells and let cells differentiate for 18 h, which represents a time point during early differentiation when p38 activity is known to be induced (Wu et al., 2000b
-actin), proteins with unknown function (e.g., RIKEN cDNA E130014H10 gene), and metabolic enzymes (e.g., carbonyl reductase 2). Instead, we mainly focused on genes encoding nuclear factors and signaling molecules. siRNAs against these p38 target genes were designed and their effects on myogenin induction were examined. As a result, three novel p38 target genes including E2F2, cyclin D3 and WISP1 were identified which met the criteria mentioned above. They were selected for further in-depth analysis.
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, β, and
and Essential for Myogenin Expression
, β, and
, because individual knockdown of either p38
, β, or
all led to reduced expression levels of E2F2 (Figure 3A). As SB202190 inhibits both p38
and β, as expected, the addition of SB202190 to C2C12 cells reduced the expression levels of both E2F2 and myogenin (Figure 3B). It was interesting to note that E2F2 was already present at low levels before differentiation; however, upon differentiation, both mRNA and protein levels of E2F2 further increased (Figure 3, C and D). Based on qRT-PCR analysis, by 48 h after differentiation, the amount of E2F2 mRNA was nearly eightfold higher than that in proliferating myoblasts (Figure 3C). Importantly, knockdown of E2F2 by two different sets of siRNAs significantly inhibited myogenic differentiation as judged by reduced myogenin expression (Figure 3E), and a drastically reduced number of multinucleated myotubes (Figure 3F). To understand why E2F2 is required for myogenin expression, we examined the effect of E2F2 knockdown on cell proliferation as well as expression and activity of several key cell cycle regulators and myogenic factors. We found that knockdown of E2F2 did not significantly affect cell cycle distribution or cell proliferation rate (Supplemental Figure). However, it increased the cyclin D1 level without affecting the expression levels of other cell cycle regulators (e.g., CDK4, Rb, p27, and p21) (Figure 3G; data not shown). In addition, knockdown of E2F2 did not affect the expression levels of MyoD and MEF2, but it significantly reduced both MRF- and MEF2-dependent gene transcription as judged by reporter assays (Figure 3H; data not shown). Our above-mentioned data indicated that E2F2 is a novel target of p38
, β, and
and that it mediates p38 MAPK-induced myogenin expression.
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and Required for Myogenic Differentiation
-siRNA (Table 4), which was confirmed by both RT-PCR and qRT-PCR (Figure 5A). In C2C12 cells, we found that WISP1 mRNA was already expressed in proliferating myoblasts and that its levels gradually increased during differentiation (Figure 5B). To assess the contribution of WISP1 to differentiation, we designed two different siRNAs against WISP1. When transfected into C2C12 cells, both siRNAs were able to inhibit the expression of myogenin and MHC (Figure 5C). To understand why WISP1 is required for myogenin induction, we examined the effect of WISP1 knockdown on cell proliferation and expression and activity of key cell cycle regulators and myogenic factors. No obvious effect was seen on cell proliferation or expression levels of several cell cycle regulators (e.g., cyclin D1, p21, p27, CDK4, and Rb). However, a significant inhibition on MRF- and MEF2-dependent gene transcription was observed (Figure 5D). Because WISP1 is a secreted protein (Brigstock, 2003
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| DISCUSSION |
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, β, and
) are expressed in C2C12 cells and that all three are required for C2C12 differentiation. A recent report by Perdiguero et al. (2007)
is required for myogenic differentiation, their findings differ from ours in that they found that myoblasts deficient in either p38β or
proliferate and differentiate normally compared with the wild-type counterparts (Perdiguero et al., 2007
, which may mask the normal physiological effects of p38β and
. In this regard, it would be very informative to reveal the levels and activities of the remaining p38 isoforms in primary myoblasts deficient in a particular p38 isoform. Apparently, such a compensatory mechanism does not efficiently operate in C2C12 cells, because the expression levels of the remaining p38 isoforms in C2C12 cells did not change significantly when one particular p38 isoform was transiently knocked down (Figure 2A). We do not think that the results from our siRNA approach are artifacts, because different siRNAs targeting distinct regions of either p38β or
displayed similar effects. In addition, our results about the involvement of p38
in myogenic differentiation were consistent with a previous report (Lechner et al., 1996
. Importantly, some of these p38β- or
-controlled genes (e.g., cyclin D3 and WISP1) are required for myogenic differentiation. Thus, we think that the difference between our study and that by Perdiguero et al. (2007)
Identification of Novel p38 Target Genes Involved in Myogenic Differentiation
Many novel p38 target genes have been identified through our genome-wide gene expression profiling, and some of them are found to be required for early myogenic differentiation, which provides a mechanism to explain why different p38 isoforms are required. E2F2, a member of the E2F family, is coregulated by p38
, β, and
. Although E2F2 is normally involved in cell proliferation in many cellular systems (Lukas et al., 1996
; Wu et al., 2001
), unexpectedly, we find that it also plays an important role during early myogenic differentiation (Figure 3, E and F). Because E2F2 is already present in proliferating myoblasts (Figure 3, C and D), and it is required for myogenin induction upon differentiation, it suggests that, in addition to MEF2, MyoD, and Six proteins (Xu et al., 2002
), E2F2 is another key mediator involved in p38 MAPK-mediated myogenin expression. However, it is noteworthy that these mediators are differentially regulated by p38 MAPK: whereas MEF2 serves as a direct substrate of p38 MAPK (Han et al., 1997
; Wu et al., 2000b
), E2F2 is regulated by p38 MAPK at either the transcriptional or posttranscriptional level. For MyoD and Six, it remains unclear how exactly p38 MAPK activates them. At present, we do not know whether E2F2 regulates myogenin expression through direct binding to the myogenin promoter or through other intermediate molecules that in turn bind to the myogenin promoter. Our initial analysis suggests that E2F2 is required for MRF- and MEF2-dependent gene transcription. In addition, E2F2 may facilitate cell cycle exit by promoting cyclin D1 down-regulation, because knockdown of E2F2 enhances cyclin D1 levels.
Unlike E2F2, cyclin D3 is uniquely regulated by p38β during myogenic differentiation. Consistently, the involvement of cyclin D3 in myogenic differentiation has been recognized in several previous reports (Kiess et al., 1995
; Rao and Kohtz, 1995
; Cenciarelli et al., 1999
). Unlike cyclin D1, which is rapidly down-regulated upon differentiation, cyclin D3 levels gradually increase and peak in postmitotic myotubes (Figure 4B). Unphosphorylated Rb is found to interact with and stabilize cyclin D3 protein, which in turn forms a multiprotein complex containing inactive CDK2 and CDK4, p21, and proliferating cell nuclear antigen (Kiess et al., 1995
; Cenciarelli et al., 1999
). Such a complex is thought to contribute to irreversible cell cycle exit and maintenance of the differentiated state. In addition to these previous findings, our current study shows for the first time that cyclin D3 is required for myogenin induction. We suggest that cyclin D3 may facilitate cell cycle exit by promoting cyclin D1 down-regulation, because knockdown of cyclin D3 prominently up-regulates cyclin D1 levels (Figure 4D). Furthermore, we show that cyclin D3 is required for MRF-dependent gene transcription. Because cyclin D3 is a transcription target of MyoD (Cenciarelli et al., 1999
), this suggests the existence of a positive regulatory loop between MyoD and cylin D3. It remains unclear how exactly cyclin D3 exerts its effect on cyclin D1- and MRF-dependent gene transcription.
WISP1, a known target gene induced by Wnt-1 (Pennica et al., 1998
; Xu et al., 2000
), is a member of the CCN family proteins that consists of Cysteine-rich 61 (CCN1), connective tissue growth factors (CTGF or CCN2), nephroblastoma overexpressed (Nov or CCN3), WISP1 (CCN4), WISP2 (CCN5), and WISP3 (CCN6) (Brigstock, 2003
). The receptors for members of the CCN family remain poorly characterized. In several cases, certain integrins are thought to be the receptors for CCN1, CCN2, and CCN3 (Brigstock, 2003
). We show here that WISP1 is specifically induced by p38
during myogenic differentiation (Figure 5). As a secreted molecule, we show that WISP1 can regulate myogenin expression in an autocrine manner (Figure 6). Furthermore, WISP1 enhances both MRF- and MEF2-dependent gene transcription. Interestingly, CCN3, another member of the CCN family, is found to be specifically induced by p38β (Table 3). However, the functional significance of CCN3 induction by p38 β remains unclear, because knockdown of CCN3 does not affect myogenin expression (data not shown). It also remains unclear how WISP1 affects myogenin expression. Because WISP1 is also induced by Wnt-1, it may serve as a converging point to integrate signals from both the p38
pathway and the Wnt pathway.
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| ACKNOWLEDGMENTS |
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antibody, and Carol Wong for technical assistance. This project is supported by Hong Kong Research Grant Council grants HKUST6412/05M, HKUST6496/06M, and CA06/07.SC02 (to Z.W.); Area of Excellence Scheme AoE/B-15/01; and a 973 project from the Ministry of Science and Technology of China (2002 CB513005) (to Z.W. and Y.J.). | Footnotes |
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Address correspondence to: Yong Jiang (jiang48231{at}163.com) or Zhenguo Wu (bczgwu{at}ust.hk).
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