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Vol. 19, Issue 4, 1772-1782, April 2008
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Centre for Regenerative Medicine, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom
Submitted July 10, 2007;
Revised January 9, 2008;
Accepted February 4, 2008
Monitoring Editor: Marianne Bronner-Fraser
| ABSTRACT |
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| INTRODUCTION |
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-tubulin, which forms a
-tubulin ring complex (
-TuRC) and initiates microtubule nucleation (Moritz et al., 1995
One group of proteins that are linked to mitosis and cancer progression is the Ras-association domain (RASSF) family. Classically, the vertebrate RASSF family (reviewed in the introduction of Avruch et al., 2005
), comprises six members (RASSF1-6), which are expressed as multiple splice variants. Epigenetic-induced silencing of these genes occurs at high frequencies in tumors (Agathanggelou et al., 2005
). Five of these have been shown to exhibit functions compatible with tumor suppressor properties (Khokhlatchev et al., 2002
; Vos et al., 2003
; Eckfeld et al., 2004
; Agathanggelou et al., 2005
; Allen et al., 2007
). Structurally, the RASSF proteins are characterized by the presence of two domains: a Ras-association (RA) domain (Ponting and Benjamin, 1996
) and a protein–protein interaction Sav/RASSF/Hippo (SARAH) domain (Scheel and Hofmann, 2003
). In addition, two further RA domain–containing proteins have been identified, called RASSF7 and RASSF8, so the RASSF family currently contains eight members (van der Weyden and Adams, 2007
). RASSF8 (also known as "carcinoma associated HoJ-1" and "C12orf2") has been implicated in a chromosomal translocation event, which leads to synpolydactyly (Debeer et al., 2002
). It has also been proposed to be a tumor suppressor (Falvella et al., 2006
). Transcript levels are reduced in lung cancer cells, and ectopic expression leads to inhibition of anchorage-independent growth. However, polymorphisms in the human RASSF8 gene are not associated with adenocarcinoma risk (Falvella et al., 2007
). RASSF7, originally called HRC1, was identified because it lies close to HRAS1 in the genome (Weitzel et al., 1992
). It has not been studied except for our previous work showing that Xenopus RASSF7 (then called carcinoma associated) is expressed in the epithelial cells that surround the early embryo (Chalmers et al., 2006
). Currently the biological functions of RASSF7 and RASSF8 are unknown.
We have analyzed the sequence of human RASSF7 and RASSF8 and found two additional RASSF proteins, P-CIP1/RASSF9 and RASSF10. Surprisingly, these four proteins should not be considered part of the classical RASSF family. Instead they are members of a new family of four RA domain–containing proteins, which we call the N-terminal (NT) RASSF family. The family appears to be evolutionarily conserved, because we identified NT RASSF homologues in the lower vertebrate Xenopus and the invertebrate Drosophila. To begin to understand the role of this family we analyzed the function of one of its members, Xenopus RASSF7. We show that RASSF7 is expressed in several embryonic tissues including the brain, where it is required for completing mitosis. Knocking down its function blocks spindle formation and triggers mitotic arrest, nuclear breakdown, apoptosis, and developmental defects including a loss of tissue architecture in the neural tube. Finally, consistent with a role in regulating spindle microtubules, RASSF7 protein was found to localize to centrosomes in a microtubule-dependent manner.
| MATERIALS AND METHODS |
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Xenopus RASSF7 pBlueScript SK(–) (Xl095b08) was obtained from the XDB website and fully sequenced. This clone was used instead of the clone identified previously Xl038l06, then called carcinoma associated (Chalmers et al., 2006
), as the latter appeared truncated. The coding sequence for Xenopus laevis RASSF7 was PCR amplified from Xl095b08 and cloned into a gateway entry clone using the pENTR Directional TOPO Cloning Kit (Invitrogen, Carlsbad, CA), and used to generate an N-terminal GFP-RASSF7 pCS2, a C-terminal RASSF7-HA, and a RASSF7 pCS110K vector using gateway cloning (Invitrogen). We generated the destination vector for making N-terminal green fluorescent protein (GFP) fusions using a pCS2 GFP vector and the Gateway vector conversion kit (Invitrogen).
RT-PCR
RNA extraction, RT reaction, and PCR were carried out as described previously (Chalmers et al., 2002
). PCR primers were as follows: RASSF7 forward: 5'-TTCAGGCCAGGAATCAGG-3'; RASSF7 reverse: 5'- GACACCATTGGGTTCTGC -3'; ODC forward: 5'-CAGCTAGCTGTGGTGTGG-3'; and ODC reverse: 5'-CAACATGGAAACTCACACC-3'.
Standard Growth Conditions of Embryos
X. laevis eggs were fertilized using standard procedures (Sive et al., 2000
). Embryos were cultured in 0.1x Marc's modified Ringer's solution (MMR), pH 7.4 (100 mM NaCl, 2 mM KCl, 2 mM CaCl2, 1 mM MgCl2, and 5 mM HEPES). Later stage embryos (stage 23 onward) were cultured in 0.1x MMR supplemented with 25 µg/ml gentamicin. Embryos were staged by cell number or as described previously (Nieuwkoop and Faber, 1967
). For microtubule disruption assays, stage 10 embryos were treated with 20 µg of nocodazole (Sigma, St. Louis, MO) for 2 h. Whole mount pictures were obtained with a Nikon DXM1200C digital camera (Melville, NY) on a Leica MZFL III microscope (Deerfield, IL).
In Situ Hybridization
RASSF7 pBlueScript SK(–) (Xl095b08) was used to make a Dig-labeled probe, and in situ hybridization was carried out using a previously described method (Harland, 1991
).
Immunoblotting
Extracts were obtained using FREON (Riedel-de Haën, Honeywell, Berlin, Germany) as previously described (Regad et al., 2007
). Proteins were resolved by SDS-PAGE gel and detected by Western blot with anti-hemagglutinin (HA), clone 12CA5 (Roche; 1 in 400), or anti-
-tubulin, clone DM1A (Sigma; 1 in 5000). Horseradish peroxidase–conjugated goat anti-mouse immunoglobulin G (Sigma) was used as a secondary antibody at a dilution of 1 in 5000.
Morpholino Antisense Knockdown and RNA Overexpression
Morpholino oligonucleotide (MO; Gene Tools, Philomath, OR) sequences were as follows: Standard Control MO, 5'-CCTCTTACCTCAGTTACAATTTATA-3'; RASSF7 MO1, 5'-CATCCACCCACACCTTCAGCTCCAT-3'; and RASSF7 MO2, 5'-ATTGAACACGAGGAATGAGGTCGGC-3'. The control MO (Con MO) was directed against a human reticulocyte β-globin mutation. RASSF7 MO1 was directed against the translational start site of RASSF7, whereas RASSF7 MO2 was directed against the sequence immediately 5' of the translational start site of RASSF7. Twenty nanograms of each of the MOs were injected into both cells of embryos at the two-cell stage.
The RASSF7 pCS110K plasmid was used to generate RASSF7 RNA for overexpression experiments, using the message machine kit (Ambion, Austin, TX). Two nanograms of RASSF7 RNA was injected into both cells of two-cell stage embryos. GFP-RASSF7 CS2 and RASSF7-HA were used to make RNA for localization experiments, by expression from the SP6 promoter using the message machine kit (Ambion). GFP-RASSF7 RNA, 2.5 ng, was injected into one cell of embryos at the two-cell stage, and embryos were cultured until stage 10. Once cultured until the required stage, embryos were fixed in MEMFA (0.1 M MOPS, pH 7.4, 2 mM EGTA, 1 mM MgSO4, and 3.7% formaldehyde) for 2 h at room temperature and where required, processed for histology or immunohistochemistry.
Histology and Immunohistochemisty
Embryos for histological staining were serial dehydrated using a washing series of 70, 90, 95, and 100% ethanol followed by histoclear (Raymond A. Lamb, Eastbourne, East Sussex, United Kingdom). The dehydrated embryos were then embedded in paraffin wax (Raymond A. Lamb) heated to 60°C. These were sectioned on a microtome in 10-µm-thick sections. Samples were stained with hematoxylin and eosin according to the manufacturer's instructions (Sigma), and examined on a Leica DMRB microscope.
Embryos used to visualize GFP or for antibody staining were embedded in fish gelatin as described previously (Chalmers et al., 2003
), except tadpole-stage embryos, which were incubated in 20% sucrose for 2 h, washed several times in PBS, and then embedded in 15% fish gelatin for freezing. The embryos were cryosectioned and antibody-stained as previously described (Chalmers et al., 2003
). The following antibodies were used: anti-
-tubulin, clone GTU-88 (Sigma; 1 in 100); anti-laminin (Abcam; 1 in 100); anti-
-tubulin, clone DM1A (Sigma; 1 in 100), and clone YL1/2 (Abcam; 1 in 100); anti-active caspase 3 (Abcam; 1 in 100); and anti-histone H3 phospho S10 (Abcam; 1 in 500). The following secondary antibodies were used: anti-mouse Alexa 568 (Molecular Probes, Eugene, OR); anti-rabbit Alexa 488 (Molecular Probes); anti-rat Alexa 488 (Molecular Probes); and anti-mouse Alexa 488 (Molecular Probes). All secondary antibodies were used at a 1 in 300 dilution. The nuclear stains, DAPI (Sigma) and Sytox Green (Molecular Probes) were used at dilutions of 1 in 10,000 and 1 in 5000, respectively. Phalloidin (Molecular Probes) was used at a concentration of 1 U/ml. TUNEL (terminal deoxynucleotidyl transferase-mediated dUTP nick-end labeling) staining was performed using the in situ cell death detection kit, TMR red (Roche Applied Science, Indianapolis, IN), according to the manufacturer's instructions. Stained sections were mounted in Vectasheild (Vector Laboratories, Burlingame, CA) and imaged on a Zeiss LSM 510 META confocal microscope (Thornwood, NY).
Statistics
Means and SDs were calculated and plotted using GraphPad Prism 4 (San Diego, CA) or Microsoft Excel (Redmond, WA). Each experiment was repeated in triplicate. p < 0.05 was considered significant. Statistical analysis was carried out using unpaired t tests.
| RESULTS |
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Human RASSF7 and RASSF8 are located close to members of the Ras superfamily in the genome (Weitzel et al., 1992
; Falvella et al., 2006
). We investigated the genomic location of P-CIP1/RASSF9 and RASSF10 and found that RASSF10 also maps close to a Ras gene (Figure 1B). Thus three of four NT RASSF members exhibit close association to Ras genes. No consistent association between human classical RASSF and Ras genes could be found (data not shown), highlighting another difference between the two families. We conclude that the presence of distinct NT and classical RASSF families is an evolutionarily conserved feature, found in species ranging from Drosophila to Xenopus and humans.
RASSF7 Is Expressed in Several Embryonic Tissues
To begin to understand the role of the NT RASSF family we investigated the function of one member, Xenopus RASSF7. First we examined expression patterns of the gene in developing Xenopus embryos. Xenopus RASSF7 transcripts were detected by RT-PCR in eggs, embryos, and tadpole stages, showing that RASSF7 has both maternal and zygotic expression (Figure 2A). In situ hybridization indicated that RASSF7 had prominent neural and epidermal expression at neural plate stages (Figure 2B). This expression was restricted to the superficial layer of the neural plate and epidermis, as described previously (Chalmers et al., 2006
). The neural and epidermal expression was maintained in tadpole stages. Several other tissues also expressed RASSF7 at this stage including the eye, ear (otic vesicle), branchial arches, and embryonic kidney (pronephros).
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RASSF7 Knockdown Causes Severe Neural Tube Defects
Anterior sections of the knockdown embryos (Figure 4A) revealed striking morphological abnormalities in the neural tube of the RASSF7 MO-injected embryos (Figure 4B). In RASSF7 knockdown embryos, the neuroepithelial cell layer extended away from the pial regions of the developing brain into zones normally occupied by connective tissue and often also into the ventricular cavity. The spreading of the neuroepithelial layer occurred from the forebrain through to the hindbrain (data not shown). There was a range of developmental defects from moderately affected, where the neuroepithelial cell layer extended but the ventricular cavity was still present or reduced (seen with both RASSF7 MOs), to severely affected, where the ventricular cavity was completely lost (only seen with MO1). The strong phenotype seen in the neural tube is consistent with the high level of RASSF7 expression seen in this tissue (Figure 2B).
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RASSF7 Knockdown Triggers Nuclear Fragmentation and Apoptosis
In addition to breakdown of tissue architecture there was another prominent phenotype of the RASSF7 MO-injected embryos. The RASSF7 knockdown tissues exhibited extensive nuclear fragmentation (Figure 4C; DAPI staining). A second DNA stain, Sytox Green, confirmed the presence of nuclear fragments in both moderately and severely affected tissues (Figure 5A). Fragments were detected in other tissues of RASSF7 knockdown embryos, particularly in the eye and skin (Supplementary Figure 1). These sites also express RASSF7 (Figure 2B). In contrast, in the somites, notocord and endoderm, tissues where we did not see RASSF7 expression, the nuclei appeared normal (Figure 5B). Importantly, RASSF7 RNA is capable of rescuing this nuclear fragmentation (Supplementary Figure 2A), confirming that this phenotype is caused by the reduction in RASSF7 expression in the developing neural tube. To test if these fragments represented apoptotic bodies, we carried out TUNEL (Hensey and Gautier, 1998
) and active caspase 3 staining (Tseng et al., 2007
). The number of apoptotic cells was increased by approximately fivefold for TUNEL staining and 40-fold for caspase 3 staining in the MO1 affected tissues compared with control (Figure 5, C and D). Despite the big increase in apoptosis, a large number of the nuclear fragments were not apoptotic (Figure 5C, arrows). This suggests that in addition to apoptosis there must be another cause of the nuclear fragmentation.
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-tubulin staining) lined the ventricular cavity (Figure 6A) because they are localized apically in neuroepithelial cells (Astrom and Webster, 1991
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RASSF7 Localizes to the Centrosomes in a Microtubule-dependent Manner
To establish why RASSF7 might be required for mitosis, we investigated its subcellular localization. We used a Xenopus RASSF7 N-terminal GFP-, and a C-terminal HA-fusion construct. Both were found to localize to discrete dots, adjacent to the nuclei of expressing cells (Figure 7, A and B). This staining colocalized with
-tubulin, indicating that the fusion proteins localize to the centrosomes. We analyzed the localization of GFP-RASSF7 at interphase, prophase, metaphase, and anaphase (Figure 7A). In each case RASSF7 showed consistent localization to the centrosomes, although often weaker at anaphase. In addition the centrosome localization of GFP-RASSF7 was conserved in later stage embryos (Figure 7C).
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| DISCUSSION |
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We show that the NT RASSF family is an evolutionarily conserved novel family of RA domain–containing proteins that comprise of four vertebrate members: RASSF7, RASSF8, and two new RASSF proteins, P-CIP1/RASSF9 and RASSF10 (Figure 1A). The conserved domain structure of human, Xenopus and Drosophila NT RASSF proteins raises the possibility that other members of the NT RASSF family may play a role in controlling mitosis. It could be that in the RASSF7 negative tissues other members of the family play a similar role. A recent genome-wide screen in Drosophila provides some support for this conserved function hypothesis (Goshima et al., 2007
). It showed that in the first round of the screen, inhibiting dmRASSF7/8 (NP_651411
[GenBank]
/CG5053) produced a weak effect on the mitotic spindle. This experiment requires confirmation because weak effects identified in the first round of the screen were not followed up. Little is known about the biological function of the other vertebrate members. Ectopic expression of RASSF8 leads to inhibition of anchorage-independent growth (Falvella et al., 2006
). This might suggest an involvement in mitosis but would also be consistent with other possible roles. P-CIP1/RASSF9 has been shown to interact with the secretory granule modifying enzyme PAM and associate with recycling endosomes (Chen et al., 1998
), which does not suggest a role in spindle formation. No work has been carried out on RASSF10. A lot of future work is needed to establish if the NT RASSF members share similar functions as well as similar structures.
The major phenotype of RASSF7 knockdown in Xenopus embryos, identified by histology, was in the neural tube and we focused on this tissue. However, RASSF7 does not only function in the neural tube, as there were fragmented nuclei and apoptotic cells in other tissues that express RASSF7, including the eye and the skin (Supplementary Figure 1). The external developmental effects noted in the knockdown embryos, such as bent axis and reduced eye pigmentation, can probably be attributed to the incorrect development of a range of tissues expressing RASSF7. An intriguing question is why the neural tube showed the biggest defect in tissue architecture. One possibility is that cell divisions may differ in the neural tube to other tissue types. It has previously been noted that when undergoing proliferative divisions, the neuroepithelial cells of the developing brain are particularly susceptible to spindle abnormalities (Gotz and Huttner, 2005
), although this is more often due to spindle positioning rather than loss (Fish et al., 2006
). Alternatively, other NT RASSF proteins may be able to compensate for RASSF7 loss in certain tissues, but not the neural tube. This would also explain why a gene that is required for mitosis is not expressed in all mitotic tissues. It will be interesting to investigate other NT RASSF expression patterns in developing Xenopus tissues.
Our results show that RASSF7 is essential for progression through mitosis and mitotic spindle formation. We found that during RASSF7 depletion, dividing cells arrested early in mitosis. We did not distinguish between cells in prophase and prometaphase. However it is likely the majority of the arrested cells were in a prometaphase-state, given that after inhibition of spindle formation by nocodazole treatment, dividing cells often arrest in prometaphase (Kimura et al., 2000
; Eskelinen et al., 2002
). Aberrant spindle formation is thought to drive chromosomal instability in cells predispositioned to aneuploidy, such as in cancer cells. It is likely that the nuclear fragments we observed in the neural tube of RASSF7 deficient embryos (Figure 5) represented the products of failed divisions and resulting breakdown in the nuclei. It is also possible that some cells managed to divide but the chromosomes were not equally distributed in the daughter cells. Thus a reduction in RASSF7 expression appears to lead to aneuploidy in proliferating cells.
Previous observations have shown that animal cell types lacking centrosomes are still able to form a spindle, albeit less efficiently (Hinchcliffe et al., 2001
; Khodjakov and Rieder, 2001
; Basto et al., 2006
). The loss of centrosomes would not be expected to produce the phenotype we describe. Consistent with this, we see cells where spindles were not formed despite the presence of the centrosome. This shows that the arrest in mitosis is not caused by losing centrosomes but by a more specific defect in forming a mitotic spindle such as in bipolar organization, microtubule nucleation, stability, or anchoring at the centrosome during M phase. Knockdown of proteins that function in bipolar organization or anchoring produce different phenotypes (Young et al., 2000
; Cullen and Ohkura, 2001
; Cassimeris and Morabito, 2004
; Toya et al., 2007
), arguing that RASSF7 knockdown produces a defect in microtubule nucleation or stability.
The mechanisms responsible for microtubule nucleation and stability involve a complex array of centrosome-associated proteins. Our results suggest that RASSF7 represents a novel part of this process. However, unlike the majority of centrosomal proteins, such as gamma tubulin, pericentrin, Cep 192, and TACC proteins (Gergely et al., 2000
; Young et al., 2000
; Andersen et al., 2003
; Gomez-Ferreria et al., 2007
), RASSF7 localization requires microtubules. This shows that there is a reciprocal interaction between RASSF7 and the microtubules. RASSF7 is required for microtubules to form a spindle, and microtubules are required for RASSF7 to localize. It will be interesting to investigate how RASSF7 interacts with microtubules and whether this is by direct or indirect binding. An intriguing possibility is that RASSF7 may interact with microtubules via other microtubule dependent components of the centrosome. These include components of the cytoplasmic dynein motor, where the dynactin component is required for anchoring of microtubules at the centrosomes (Quintyne et al., 1999
).
It has been proposed that RASSF8 is a potential tumor suppressor, with reduced expression in lung cancer cells (Falvella et al., 2006
). This suggests that RASSF7 may also be a tumor suppressor. However elevated levels of RASSF7 expression have recently been shown to be a marker of pancreatic islet cell tumors (Lowe et al., 2007
). In fact RASSF7 was found to be up-regulated 87-fold in tumors compared with normal tissues. This argues against RASSF7 having tumor-suppressing role and raises the possibility it may even promote cancer formation. Our data shows that inhibiting RASSF7 causes an arrest in mitosis that is followed by cell death. Inhibiting the kinase PLK1 also produces an arrest in mitosis and cell death (Cogswell et al., 2000
; Liu and Erikson, 2003
). This phenotype offers the opportunity for therapeutic intervention, and PLK1 inhibitors are currently being developed for the clinic (Plyte and Musacchio, 2007
). There is clearly a long way to go, but further analysis of RASSF7 will show if it also represents a potential therapeutic target.
| ACKNOWLEDGMENTS |
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| Footnotes |
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Address correspondence to: Andrew D. Chalmers (ac270{at}bath.ac.uk)
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