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Vol. 19, Issue 6, 2544-2552, June 2008
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Departments of *Tumor Biology and
Molecular Carcinogenesis, The Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands;
Centro de Biología Molecular "Severo Ochoa" (Consejo Superior de Investigaciones Científicas-Universidad Autónoma de Madrid), 28049 Cantoblanco, Madrid, Spain; and ||Infection and Cancer Program, Division F010 and INSERM U701, Deutsches Krebsforschungszentrum, D-69120 Heidelberg, Germany
Submitted January 8, 2008;
Revised March 4, 2008;
Accepted March 24, 2008
Monitoring Editor: Susan Wente
| ABSTRACT |
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| INTRODUCTION |
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Recently, we generated a series of NES variants through reiterative screening of a phage library that display
100 fold greater affinity for CRM1 than regular NESs (Engelsma et al., 2004
). We termed these artificially generated NES variants supraphysiological NESs or supraNESs. These NESs bind CRM1 stably in the cytoplasm in the absence of RanGTP, thereby functioning as competitive inhibitors of CRM1 function. Another distinct feature of these supraNESs is their prominent localization at the nuclear envelope (NE), largely dependent on nucleoporin Nup358. This characteristic NE localization likely reveals a dissociation step in nuclear export in vivo (Engelsma et al., 2004
). So far, supraNESs have not been encountered in proteins evolved by natural selection.
Minute Virus of Mice (MVM) is an autonomous mouse parvovirus with a 5-kb single-stranded DNA genome consisting of two overlapping transcriptional units. Early transcription drives the expression of two nonstructural proteins NS1 and NS2. At later time points the structural proteins VP1 and VP2 are expressed. In the nucleus, VP proteins form an icosahedral capsid with a diameter close to 25 nm that encapsulates the viral DNA. Parvoviruses assemble in the nucleus and have evolved mechanisms for nuclear export independent of cell lysis, conceivably in order to gain systemic infection (discussed in Maroto et al., 2004
). Parvovirus particles are small enough to pass through the NPC, which has been thought to have a maximal inner diameter of
39 nm (Pante and Kann, 2002
). However, only DNA-filled viral capsids are efficiently exported from the nucleus. This requires the N-terminus of VP2 (2Nt), which is exposed from the viral capsid when an ssDNA molecule is present within (Maroto et al., 2004
). MVM virions have two different ways of nuclear exit. In transformed human fibroblastst, the capsids can exit in an NS2 and CRM1 independent way (Maroto et al., 2004
). In mouse fibroblasts, export of MVM virions is inhibited by the CRM1 inhibitor leptomycin B (LMB; Maroto et al., 2004
), indicating involvement of CRM1. Nuclear export of MVM in these cells is also dependent on NS2, which is the only known CRM1 substrate encoded by MVM (Bodendorf et al., 1999
; Eichwald et al., 2002
). Consistently, viruses with a mutated NS2 NES fail to be exported to the cytoplasm of mouse fibroblasts and display strongly reduced fitness in culture (Eichwald et al., 2002
). Thus, NS2-dependent nuclear export of mature viral particles appears, at least in their natural host, to be CRM1-mediated and a critical step in MVM infection cycle (see below).
Interestingly, CRM1 has been shown to relocalize to the cytoplasm in cells infected with an immunosuppressive strain of MVM (MVMi; Lopez-Bueno et al., 2004
). In particular, cytoplasmic sequestration of CRM1 was prominent in viruses selected in severe combined immunodeficiency (SCID) mice that carried point mutations close to the NS2 NES and showed enhanced CRM1 binding in cell lysates (Lopez-Bueno et al., 2004
). These findings led us to investigate whether NS2 may in fact contain a supraNES. We first analyzed the localization of NS2 in more detail and found that it was present not only in the cytoplasm, but accumulated at the nuclear periphery as well. Study of the behavior and biochemical characteristics of the NS2 NES indeed identified NS2 as a supraNES-bearing protein. We find that the NS2 supraNES is critical for MVM nuclear export in mouse fibroblasts. Collectively, our findings demonstrate that supraNESs are observed in nature and have been coopted by the MVM virus to promote its life cycle and pathogenicity.
| MATERIALS AND METHODS |
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B p65 (sc-372) 1:500.
Plasmids and Plasmid Construction
pdBMVp and pdBMV-NES22 (Eichwald et al., 2002
), Nmd3-GFP (Thomas and Kutay, 2003
), and pS and pSNup358 (Bernad et al., 2004
) were described previously. To construct pX-NS2P, a NcoI/BamHI fragment containing the MVMp NS2P cDNA (nt 260 to nt 2692 minus nt 515-1989 and nt 2281–2376) was excised from pTM1-NS2P (kindly provided by P. Tattersall, Yale University, New Haven, CT) and was first subcloned into pGBT9 (Clontech, Palo Alto, CA), in which an NcoI site was previously inserted in the multiple cloning site using the following EcoRI linker: 5' AATTCACCATGGTTAAC 3' and 5' AATTGTTAACCATGGTG, to generate pGBT9-NS2P and then into pALTER-1 (Promega, Madison, WI) as a EcoRI/BamHI fragment to generate pALTER-NS2P. The NS2P cDNA-containing EcoRI/HindIII fragment was further excised from pALTER-NS2P and inserted into the EcoRI/HindIII site of pX (a vector kindly provided by G. Superti-Furga, EMBL, Heidelberg, Germany). To construct pX-NS2_NES8, the so-called "NES6" and "NES8" primers with the respective sequences: 5'-AGTGGATGAAGCGACCAAAAAGGCCGGCACGCTC-3' and 5'-CCAAAAAGGCCGGCACGGCCACCGCTCACGACACCGAAAAG-3' were subsequently introduced into pALTER-NS2P using the Altered SitesR in vitro Mutagenesis System (Promega) according to the manufacturer's instructions. The resulting pALTER-NS2P_NES6 and pALTER-NS2P_NES8 were further sequenced to check for the presence of the mutations within the NS2 NES site. The EcoRI/HindIII fragment, containing the NS2P mutated cDNA, was further excised from pALTER-NS2-NES8 and inserted into the EcoRI/HindIII site of pX-NS2P. To construct green fluorescent protein (GFP)-NS2 and pRSET-NS2, a BamHI/HindIII fragment excised from pX-NS2 (NS2p isoform, obtained from Peter Tattersall, Yale University, New Haven, CT) was inserted into the BamHI/HindIII sites of pEGFP-C1 or pRSET-A. To construct GFP-NS2AAAA and pRSET-NS2AAAA, pX-NS2-NES8 was digested with XmnI and the insert containing the mutated NES was inserted in XmnI-digested GFP-NS2 and pRSET-NS2. For GFP-NS2-NES, GFP-NS2-NESL89A, GFP-NS2-NESI91A, GFP-NS2-NESL89A/I91A, and GFP-PKI
L44A, oligos (only Fw are shown) containing HindIII and BamHI overhangs (not shown) with the following respective sequences were annealed: 5'-TCGGTGGATGAAATGACCAAAAAGTTCGGCACGCTCACCATTCACGACG-3', 5'-TCGGTGGATGAAATGACCAAAAAGTTCGGCACGGCCACCATTCACGACG-3', 5'-TCGGTGGATGAAATGACCAAAAAGTTCGGCACGCTCACCGCTCACGACG-3', 5'-TCGGTGGATGAAATGACCAAAAAGTTCGGCACGGCCACCGCTCACGACG-3',5'-AGCTTACTTGGCCCTGAAGCTGGCCGGCGCCGATATCG-3'. These oligos were subcloned into HindIII/BamHI digested pEGFP-C1 (Clontech). For pRev-S4-GFP, 5'-TTGGGGCTGTTGATTTGTTGGCTCGTCTGTTTTCTGCTCTGAGTGTTAGTGGGGCCGCA-3' oligos with a BamHI and PinAI overhangs were subcloned into pRev(1.4)-GFP (Henderson and Eleftheriou, 2000
). The eGFP-NES insert containing the protein kinase A inhibitor NES was amplified by PCR from pBSSK (Roth et al., 2003
) using the forward primer containing a HindIII site 5'-CGATAAGCTTGATGGTGAGCAAGGGCGAGGAG-3' and a reverse primer, 5'-AGCTGGAGCTCCACCGCGGTG-3', and subcloned into pCDNA3 (Stratagene, La Jolla, CA) by digestion with HindIII and NotI.
Recombinant Protein Expression and Purification
Expression of GFP3-S1, Rna1p, CRM1, and GFP-PKI was described previously (Engelsma et al., 2004
). Native His6-tagged NS2 and NSAAAA (
10% purity; used for RanGAP assays) were purified using Ni-NTA agarose (Qiagen, Chatsworth. CA). Highly pure His6-tagged NS2 protein (>95% purity, used for Biocore assays) was isolated from inclusion bodies in 8 M urea purified in Ni-NTA and refolded by stepwise dialysis to 20 mM HEPES, pH 7.9, 200 mM NaCl, 1 mM DTT, and 8.7% glycerol. Refolded protein was subsequently eluted as a single peak below 30 kDa from a HiLoad S75 16/60 gel filtration column (GE Healthcare, Waukesha, WI). Eluted protein was concentrated using Centricon concentrator (10-kDa cutoff) to 0.8 mg/ml.
CRM1 RanGAP Assays
GAP assay were performed as described previously (Askjaer et al., 1999
). The following sequences of peptides were used: NS2-NES, CVDEMTKKFGTLTIHDTEK; NS2-NES22, CVDEMTKKFGTQSIHDTEK; and REVNES, CLQLPPLERLTL.
Cell Culture and Transfections
MCF7, low passage HeLa (ATCC, Manassas, VA; CCL-2), L929, and A9 cells were cultured in DMEM, containing 10% fetal bovine serum (Invitrogen, Carlsbad, CA) and antibiotics. MCF7, HeLa, and L929 cells were transfected using Fugene 6 (Roche, Indianapolis, IN), and A9 cells were transfected with Lipofectamine (Invitrogen). Images were taken using Leica TCS-NT2, SP2, and AOBS confocal microscopes (Deerfield, IL) and analyzed using Image J software (http://rsb.info.nih.gov/ij/). pSuper constructs were transfected for 72 h. Only cells with reduced Nup358 levels were scored for the presence of GFP protein at the NE. 20–40 cells per conditions were scored. LMB, 50 nM, was used when indicated. GFP-NS2-NES22 transfection was recorded live using a temperature-controlled chamber build onto the Leica AOBS microscope.
MVM Infections and Plaque Assay
Infections and virus production was performed as described previously (Eichwald et al., 2002
). Plaque assays were performed as described previously (Lopez-Bueno et al., 2004
).
Immunofluorescence Stainings and Image Analysis
Stainings were done as described previously (Bernad et al., 2004
). Pre-extraction was performed with 0.5% Triton X-100 in PBS for 1 min on ice, after which the coverslips were fixed in 3.7% formalin in PBS for 10'. Images were acquired on a Leica AOBS confocal microscope. Image analysis was done in Image J, a program, developed at the U.S. National Institutes of Health. For nucleocytoplasmic distributions, log2 nuclear to cytoplasmic ratios were calculated. Log transformation was applied to obtain equal representation of all ratios (log ratios showed normal distributions, whereas ratios usually did not). Colocalization analysis was done using the Colocalization Test plugin developed by Wayne Rasband (Research Services Branch, National Institute of Mental Health, Bethesda, MD) and Tony Collins (Wright Cell Imaging Facility, University Health Network, Toronto, Canada), available at http://www.uhnresearch.ca/facilities/wcif. Pearson's correlation coefficients (R) of intranuclear regions were calculated as well as those of randomized images. Correlation coefficients were squared to obtain a linear approximation to explained variance. Statistical analyses were done in R (www.r-project.org).
Surface Plasmon Resonance Spectroscopy
Surface plasmon resonance (SPR) spectroscopy was performed at 25°C on a Biacore T100 (GE Healthcare). CRM1 and NS2 were immobilized on a CM5 chip with amine coupling in 10 mM sodium acetate at pH 5.5 (CRM1) or pH4.5 (NS2). Approximately 17,000 response units (RUs) of CRM1 and 1800 response units (RUs) of NS2 were immobilized on the chip. For binding measurements, NS2 (18 µM), CRM1 (0.64 µM), or PKI NES peptide (50 µM) in the presence or absence of 30 µM (CRM1 chip) or 50 µM (NS2 chip) RanGTP were streamed over the chip in 20 mM HEPES-KOH pH 7.9, 200 mM sodium chloride, 8.7% glycerol at 0.03 ml/min. Simultaneously, an empty flow cell was used as reference. Biacore T100 evaluation software was used for analysis of the data.
| RESULTS |
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NS2 Relocalizes CRM1 to the Cytoplasm and Interferes with the CRM1-Export Pathway
CRM1 is relocalized to the cytoplasm in response to the expression of supraNES variants (Engelsma et al., 2004
). As human cells infected with MVMi similarly relocalize CRM1 to the cytoplasm (Lopez-Bueno et al., 2004
), we wondered whether CRM1 relocalization was mediated by the NS2 NES. Indeed, NS2-GFP expression depleted CRM1 from the nucleus and relocalized it to the cytoplasm (Figure 2A, quantified in B and C). Expression of the isolated NS2-NES fused to GFP resulted in a similar CRM1 relocalization (Figure 2A), indicating that it is NES mediated. On addition of LMB, NS2 accumulates in the nucleus, and CRM1 relocalization was largely abolished (Figure 2, A–C). In cells infected with MVM, CRM1 was also increased in the cytoplasm (Figure 2D). Furthermore, MVM carrying a previously described NS2 NES mutant, NES22, which carries point mutations in the NS2 NES (Eichwald et al., 2002
), did not relocalize CRM1 to the cytoplasm (Figure 2D).
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B protein, whose cytoplasmic localization is mediated by CRM1 (Tam et al., 2000
B in the nucleus. A quantification of this experiment is presented in Figure 3B. Significant nuclear accumulation of NF
B only occurred in cells expressing relatively high amounts of NS2 (Supplementary Figure 2). We also tested whether export of an exogenously expressed protein was hampered. We therefore studied the localization of the 60S preribosomal export adaptor Nmd3 (Ho et al., 2000
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Intranuclear Colocalization of CRM1 with Mature Virions Is Dependent on the NS2 supraNES
Maturation of MVM coincides with the externalization of the N-terminus of VP2 (2Nt) when capsid is filled with DNA (Maroto et al., 2004
). This viral maturation occurs in large nuclear structures, termed Smn-associated autonomous parvovirus-associated replication bodies, or SAABs, which appear late in infection (Young et al., 2002b
). Interestingly, NS2 has also been detected in SAABs (Young et al., 2002a
,b
), suggesting a direct role in late stages of viral maturation. Mature MVM virions can be visualized by antibodies directed against the exposed 2Nt signal of VP2 (Maroto et al., 2004
), while both mature and immature virions are detected by an anti-capsid antibody (Lopez-Bueno et al., 2004
). As shown in Supplementary Figure 3, 2Nt staining was indeed detected primarily in SAABs. For optimal detection of SAABs using the anti-capsid antibody, mouse cells were briefly pre-extracted by triton permeabilization before fixation (Supplementary Figure 3). Consistent with earlier observations, NS2 is present in SAABs, colocalizing with capsid (Figure 4A). This colocalization is independent of the wild-type NS2 NES as NS2 and capsid similarly colocalize in wild-type virus and NES22 mutant virus–expressing cells (data not shown). CRM1, however, colocalizes with SAABs to a far greater degree in cells expressing the wild-type MVM genome compared with cells expressing an NES22 mutant genome (Figure 4, B and C). These data suggest an interaction between CRM1 and the viral capsid in mouse fibroblasts, which is mediated by the NS2 NES.
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100-fold greater affinity as compared with the affinity of the reference GFP-PKI-NES. As a control for supraphysiological affinity, GFP3-S1 was used, which possesed a similar high-affinity as NS2 (Figure 5A), As expected, NS2AAAA did not bind CRM1.
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1 ng of protein). As shown in Figure 5B, significant response was detected upon addition of NS2, whereas no response was detected with the PKI NES alone. The observed increase of signal upon addition of recombinant RanGTP was close the calculated increase in mass by RanGTP joining the NS2/CRM1 complex, which is calculated as the ratio between NS2 + RanGTP (58 kDa) and NS2 alone (27 kDa). This suggests that the increased resonance response can be largely attributed to RanGTP joining the complex, without further stimulation of the NS2/CRM1 interaction per se. In contrast, RanGTP increased the response of the PKI NES substantially above the level that can be attributed to RanGTP alone. Termination of the NS2 stream allows one to assess the stability of the CRM1/NS2 interaction. Strikingly, both in presence or absence of RanGTP, part of the complex is rapidly dissociated, whereas a significant fraction of NS2 remains stably bound to CRM1. By contrast, all CRM1/PKI/RanGTP complexes are rapidly dissociated (Figure 5B).
CRM1 is a large suprahelical molecule that likely carries out large-scale conformational changes upon optimal binding (Petosa et al., 2004
). We therefore wondered whether the two pools of NS2, one stably bound and one rapidly dissociating, might represent pools of CRM1 differently cross-linked on the chip. We therefore reversed the experimental setup by chip-immobilizing NS2 and binding CRM1 in the presence or absence of RanGTP. As shown in Figure 5C, a significant resonance response was detected upon addition of CRM1 alone, whereas addition of RanGTP yielded an increase of 1.3-fold. This again can be largely attributed to RanGTP joining the complex, because the mass ratio of CRM1 together with RanGTP (157 kDa) and CRM1 alone (125 kDa) equals 1.26. Interestingly, upon termination of the CRM1 or CRM1/RanGTP stream, most of the complex decayed very slowly. Plotting the two response curves together (Figure 5D) suggests that the binary complex decays faster than the trimeric complex, indicating that the presence of RanGTP stabilizes the CRM1/NS2 interaction, but has little effect on the initial binding.
The NS2 supraNES Is Required for Viral Nuclear Export
Next, we wanted to evaluate the relevance of the supraphysiological NES observed in NS2 for the viral life cycle. To do so, we compared wild-type MVM virus to an MVM virus carrying an NES of regular strength substituted in place of its supraNES. In regular strength NESs such as the protein kinase inhibitor
(PKI
) NES, mutation of one of two core hydrophobic residues into alanine renders the NES inactive and deficient in nuclear export (Figure 6, A and B; Wen et al., 1994
). In contrast, substitution of either of the core hydrophobic amino acids (L89 or I91) of the NS2 NES into alanines converts the NS2 supraNES to a regular NES (Figure 6C). Mutation of both hydrophobic residues is required to completely inactivate the supraNES (Figure 6C).
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| DISCUSSION |
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Infectivity of the MVM virus in the host cell requires the supraphysiological characteristics of the NS2 NES. This raises the question why these supraphysiological characteristics have been coopted by MVM to enhance its viral life cycle. It is conceivable that inhibiting CRM1 provides the virus with a cytotoxic mechanism, accelerating cell death and thereby enhancing viral fitness. However, expression of a supraNES did not rescue mutant NES22 infectivity (Figure 3C), consistent with the requirement for intact CRM1 function in virus nuclear export during the viral life cycle (Eichwald et al., 2002
; Maroto et al., 2004
). Also, inhibition of CRM1 function only occurred at high NS2 expression levels and did not correlate with Nup358 association of NS2 per se. For these reasons it is likely that both the Nup358 interaction and CRM1 relocalization activities of NS2 are effects of its strong CRM1 interaction and do not necessarily imply a primary inhibiting role. Nevertheless, inhibition of endogenous NESs may disrupt trafficking of proteins involved in the antiviral response (e.g., NF
B), enhancing viral fitness on an organismal level. Considering the interphase function of CRM1, NS2 might act as a nuclear export factor for mature parvovirus capsids. Indeed, nuclear egress of MVM is inhibited upon LMB treatment (Miller and Pintel, 2002
; Maroto et al., 2004
) and NS2 supraNES mutants are defective in nuclear export of MVM viral particles. Furthermore, we observe colocalization of CRM1, NS2, and mature virions in nuclei of virus-infected cells (Figure 4), and NS2 can be retained in the nucleus by mature virus (Figure 6). These data demonstrate the requirement for the supraphysiological properties of the NS2 NES in mediating capsid nuclear export. We have not been able to demonstrate a direct interaction between NS2 and the viral capsid and/or individual capsid proteins in vitro. It is possible, however, that the interaction is highly regulated, complicating the in vitro detection of the export complex. In case of other large CRM1 cargoes, notably the 60S/Nmd3/CRM1 complex, it has similarly proven difficult to demonstrate a direct interaction. Interestingly, Nmd3, the proposed nuclear export adaptor for 60S preribosomal proteins, has recently been reported to behave in a manner reminiscent of supraNESs (West et al., 2007
). A mutant of Nmd3 unable to interact with the 60S ribosomal protein localized to the nuclear periphery in a CRM1-dependent manner and stably interacted with nucleoporins. The exact requirements of this interaction remain to be determined. Because of the similarities between 60S preribosomes and parvovirus capsids both in size and abundance, it is tempting to speculate that these large cargoes require an adaptor with high-affinity interactions for CRM1 in order to be exported.
In summary, we identified a supraphysiological NES in a viral protein that is required for viral nuclear export in natural host cells. Our data show that in spite of their cytotoxicity, suprahysiological NESs have evolved in nature and are coopted to enable nuclear export of specific CRM1 cargoes like MVM viral particles. Supraphysiological export signals may serve as a paradigm for adapting cellular transport to cargo-specific needs.
| ACKNOWLEDGMENTS |
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| Footnotes |
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Present address: Instituto de Investigaciones Biomédicas "Alberto Sols" 28029 Madrid, Spain. ![]()
Address correspondence to: Maarten Fornerod (m.fornerod{at}nki.nl).
Abbreviations used: 2Nt, amino-terminus of VP2; GFP, green fluorescent protein; LMB, leptomycin B; MVM, minute virus of mice; NE, nuclear envelope; NES, nuclear export signal; NPC, nuclear pore complex; NS2, non-structural protein 2; SAABs, Smn-associated autonomous parvovirus-associated replication bodies; supraNES, supraphysiological NES; VP, viral protein.
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