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Vol. 19, Issue 8, 3212-3220, August 2008
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Department of Medicine, University of British Columbia and Vancouver Coastal Health Research Institute, Vancouver, BC, V6H 3Z6 Canada
Submitted November 26, 2007;
Revised April 16, 2008;
Accepted May 8, 2008
Monitoring Editor: William P. Tansey
| ABSTRACT |
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| INTRODUCTION |
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It is now well established that genome surveillance mechanisms function to cause a delay, or arrest, in progression of the cell cycle at the boundary of G1/S or G2/M in response to DNA damage (Zhou and Elledge, 2000
; Abraham, 2001
; Kastan, 2001
; Nyberg et al., 2002
; Sancar et al., 2004
). These surveillance mechanisms are known to involve a network of interacting proteins that recognize damage and elicit responses including cell cycle delay, DNA repair, and apoptosis (Elledge, 1996
; Zhou and Elledge, 2000
). Cdk's, which play a central role in cell cycle progression, are key targets of these checkpoints (Iliakis et al., 2003
). Yeast model systems have revealed much about the mechanisms of the DNA damage response, as well as the identity of the corresponding genes in higher eukaryotes. A role for a gene such as Mcl-1 would not have been found from studies of more primitive organisms, because Mcl-1 does not appear to have any orthologues other than in vertebrates (e.g., search in OrthoMCL: http://orthomcl.cbil.upenn.edu/cgi-bin/OrthoMclWeb.cgi?rm=index).
Because we had previously shown the interaction of Mcl-1 with Cdk-1 and we and others showed that Mcl-1 expression causes a suppression of cell proliferation, we investigated the potential change in Mcl-1 expression and whether Mcl-1 may possibly play a role when cells are treated with agents that cause DNA damage. We found that Mcl-1 expression increases, particularly in the nucleus, as a result of mild DNA damage. More extensive damage had the expected effect of decreasing expression of Mcl-1, as has been reported previously (Nijhawan et al., 2003
). After mild DNA damage, the nuclear Mcl-1 was shown to be associated with active Checkpoint kinase 1 (Chk1). Increased phosphorylation of Chk1 at an activating site was observed after transient expression of Mcl-1, whereas no other evidence of a DNA damage response was evident. Furthermore, knockdown of Mcl-1 expression eliminated the Chk1 phosphorylation that occurs after DNA damage. By comparison of ATM (ataxia telangectasia mutated)-negative and ATR (AT mutated and Rad3 related)-deficient cells, we could conclude that Mcl-1 plays a role in ATR-dependent activation of Chk1, revealing a completely novel function for Mcl-1.
| MATERIALS AND METHODS |
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Antibodies and Reagents
Anti-Mcl-1 (Sc-19), Chk1 (FL-476), p85
(Z-8), and Oct I (C-21) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-phospho-Chk1 (Ser345) was from Cell Signaling (Beverly, MA). Monoclonal anti-human vinculin was from Sigma (St. Louis, MO). Etoposide was purchased from Calbiochem (La Jolla, CA). Isogranulatimide was a kind gift from Dr. M. Roberge (University of British Columbia). [
-32P]ATP was purchased from ICN Biomedicals (Costa Mesa, CA). RPMI 1640, fetal bovine serum (FBS), Protein G agarose beads were purchased from Invitrogen (Carlsbad, CA).
Cell Treatments
Optimal concentrations of etoposide were determined for each cell line that caused G2 arrest with the least amount of apoptosis. For HL-60 and FDC-P1 cells, 1.5 µM etoposide was used and for HeLa cells, 15 µM was required. For UV treatments, cells were irradiated using a UVB source (5 J m–2 s–1) for 20 s for a total of 100 J/m2, after which cells were washed twice with phosphate-buffered serum (PBS) and then allowed to incubate under normal conditions.
Subcellular Fractionation
Subcellular fractionation was carried out as described (Shiio et al., 2003
). Briefly, cells were resuspended in buffer A (10 mM HEPES, pH 7.9, 10 mM KCl, 1.5 mM MgCl2, 0.34 M sucrose, and 10% glycerol), containing protease inhibitors and 1 mM dithiothreitol (DTT). To each extract, 0.1% Triton X-100 was added, and samples were incubated on ice for 7 min. The samples were centrifuged for 5 min at 1300 x g. Supernatant containing cytosolic proteins was centrifuged further for 10 min at 20,000 x g. The pellets containing the nuclei were washed with buffer A, resuspended in buffer B (0.2 mM EGTA, pH 8.0, and 3 mM EDTA, pH 8.0), and incubated on ice for 30 min. The extracts were centrifuged at 1700 x g for 5 min. The pellets were washed and centrifuged for 5 min at 1700 x g. The pellets were resuspended in sample buffer and sonicated for 15 s. In experiments where nuclear proteins were extracted together with chromatin, 5 µg/ml each of DNase I and RNase A were added to the buffer B and the nuclear preparations were sonicated for 10 s.
Indirect Immunofluorescence Staining
Immunofluorescence staining was performed using the protocol as described previously (Liu et al., 1999
). Briefly, HeLa cells were seeded on glass coverslips, treated or not with either 15 µM etoposide, and fixed with fresh 4% paraformaldehyde in PBS. Cells were blocked with 10% normal goat serum and probed with 1:250 rabbit anti-Mcl-1 antibody or 1:150 mouse anti-Chk1. Bound antibody was detected by goat anti-rabbit antibody conjugated to Alexa fluor 488 or goat anti-mouse antibody conjugated to Alexa fluor 594. The cell nuclei were stained with 1:10,000 dilution of Hoechst 33342. Stained cells were analyzed using a Zeiss Axioplan 2 imaging microscope (Thornwood, NY).
Immunoprecipitation
Cells were washed with PBS before total cell lysates were obtained by lysing cells in ice-cold solubilization buffer (20 mM Tris HCl, pH 8.0, 1% NP40, 10% glycerol, 137 mM NaCl, and 10 mM NaF) with protease inhibitor cocktail, 200 µM sodium vanadate, and 5 µg/ml each of DNase I and RNase A. Cells were sonicated for 15 s and centrifuged at 32,000 x g for 10 min. Protein concentrations were determined by BCA protein assay. For immunoprecipitation, cytosolic, nuclear or chromatin extracts were precleared with 20 µl of protein G agarose beads for 30 min. Anti-Mcl-1 antibody at 1 µg/ml was added, and after a 2-h incubation, the immunoprecipitates were collected by adding 50 µl of protein G agarose beads. Beads were washed four times with solubilization buffer.
Kinase Assays
For determination of Mcl-1–associated Chk1 activity, total cell lysates were precleared by incubation with agarose G beads for 30 min. The samples were then incubated with anti-Mcl-1 antibody for 2 h followed by addition of agarose G beads for 1 h. After extensive washing, beads were resuspended in assay dilution buffer (25 mM β-glycerophosphate, 20 mM MOPS, 5 mM EGTA, 2 mM EDTA, 20 mM MgCl2, 250 µM DTT, 5 µM β-methyl aspartic acid, pH 7.2). CHKtide at 5 µg/ml (Furnari et al., 1997
), [
-32P]ATP, and cold ATP (25 µM) were added. The reaction was terminated after 20 min by spotting 15 µl on p81 chromatography filter paper (Whatman, Clifton, NJ). The filter papers were washed in 1% O-phosphoric acid, and the activity of each sample was measured in a scintillation counter.
Flow Cytometry
For staining of cells to detect sub-G1 DNA levels and analysis of cell cycle status, cells were fixed with 70% ethanol and subsequently stained with PBS containing 50 µg/ml propidium iodide, 100 µg/ml RNase A, and 0.1% glucose. Stained cells were analyzed using Epics XL flow cytometer (Coulter, Hialeah, FL).
Mcl-1 Small Interfering RNA Interference
For in vitro gene silencing cells were transfected with either Mcl-1 siRNA sequence described by Zhang et al. (2002)
or control siRNA (sense UUCUCCGAACGUGUCACGUdTdT, antisense ACGUGACACGUUCGGAGAAdTdT). The purified desalted and double-stranded Mcl-1 siRNA was ordered from Dharmacon Research (Boulder, CO). Control siRNA was purchased from Qiagen (Chatsworth, CA). HeLa cells were plated the day before being transfected with either 20 nM Mcl-1 or control siRNA using SILENTfect (Bio-Rad, Richmond, CA) according to the manufacturer's recommendations. After 24 h the medium was replaced with fresh siRNA for another 24 h.
| RESULTS |
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Endogenous Chk1 was immunoprecipitated from the nuclear extracts of HeLa cells treated with or without etoposide and immunoblotted for Mcl-1. Our results showed that some Mcl-1 was coimmunoprecipitated with Chk1 from the nuclear extracts of untreated cells, and this association increased substantially in cells treated with etoposide (Figure 3A). It is interesting to note that in etoposide-treated cells, the total level of nuclear Chk1 protein was also increased after etoposide treatment, but increased association with both full-length and short forms of Mcl-1 could be observed in the nucleus. Chk1 has been previously shown to be present in the nucleus in all phases of the cell cycle (Jiang et al., 2003
). We next sought to verify that reciprocal coimmunoprecipitation could be observed and at the same time investigate the association of Mcl-1 with Chk1 kinase activity. Total lysates from the murine progenitor cell line, FDC-P1, stably expressing human Mcl-1 or empty vector, were immunoprecipitated with anti-human Mcl-1 (which does not detect murine Mcl-1). These Mcl-1–expressing cells were previously characterized and were shown to have a slower rate of proliferation compared with parental cells (Jamil et al., 2005
). As shown in Figure 3B, Mcl-1 immunoprecipitates from etoposide-treated cells contained kinase activity that efficiently phosphorylated the Chk1 peptide substrate, CHKtide (Furnari et al., 1997
). In untreated cells, there was no activity detected above background levels. The elevated kinase activity was completely abolished by treatment with the Chk1 inhibitor, isogranulatimide (Jiang et al., 2004
). However, this inhibitor has also been shown to inhibit GSK-3β kinase activity, and thus we tested for the potential involvement of this kinase. We found that levels of GSK-3β activity, assayed using its specific substrate, were in fact decreased after etoposide treatment (data not shown). Furthermore, the CHKtide used as a substrate in the Chk1 kinase assay is unlikely to be phosphorylated by GSK-3 because it is not a phosphorylated peptide, which is a prerequisite for GSK-3 phosphorylation. Finally, we also confirmed that immunoprecipitation of endogenous murine Mcl-1 from untransfected FDC-P1 cells also had increased Chk1 activity after etoposide treatment, which was sensitive to 1 µM isogranulatimide (data not shown).
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Immunofluorescence staining was also used to monitor potential colocalization of Mcl-1 and Chk1 after etoposide treatment. As shown in Figure 4A, there was an increase in both total and nuclear staining of Mcl-1 and Chk1 after etoposide treatment, and these two proteins were colocalized in the nucleus. Interestingly, after cells were allowed to recover for 21 h after washing out etoposide, there were still elevated levels of both Mcl-1 as well as Chk1 phosphorylated at the activation site Ser345, as shown in Figure 4B. However, the immunofluorescence staining showed that in the majority of cells, little colocalization of the two proteins could be detected. Together, all of these results indicated that Mcl-1 can associate with active Chk1 in the nucleus after DNA damage, although we have not yet determined whether there is a direct association between the two proteins.
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In view of these results, we wanted to rule out the possibility that transient transfection with Mcl-1 may result in a generalized stress response leading to Chk1 phosphorylation. We therefore investigated the phosphorylation of H2Ax (
-H2Ax), which is considered a hallmark of DNA damage. In transiently transfected HeLa cells both empty and Mcl-1 containing vectors showed a slight increase in the
-H2Ax (Figure 5E). This effect could be attributed to the stress caused to the cells by transfection and was not due to the overexpression of Mcl-1 protein. Compared with the levels of
-H2Ax observed in transfected cells, a more robust and dramatic increase in
-H2Ax was observed in cells treated with etoposide. Similar results were observed with Chk2 phosphorylation at Thr68 (an activating site on that kinase), where no significant difference was observed between the empty vector and Mcl-1–overexpressing cells (data not shown). These results rule out the possibility that expression of Mcl-1 itself may cause a generalized DNA damage stress response.
Mcl-1–induced Chk1 Phosphorylation Requires ATR, but not ATM
Chk1 is phosphorylated on Ser345 in response to DNA damage primarily by two members of the phosphoinositide 3-kinase related kinase (PIKK) family of enzymes, ATM or ATR (Abraham, 2001
; Shiloh, 2003
). We sought to determine the kinase through which the effects of Mcl-1 were being mediated. In HT-144 cells, which have a mutation in the ATM gene (Ramsay et al., 1998
), transient transfection of Mcl-1 caused an increase in Chk1 phosphorylation similar to that seen in other cell types (Figure 6A), ruling out an essential role for ATM. Similarly, Mcl-1 overexpression caused similar increases in Chk1 phosphorylation in cells deficient for the related PIKK member, DNA-PK (data not shown). ATR cannot be knocked out because it is an essential gene, and thus we investigated the involvement of ATR by using fibroblasts derived from a Seckel syndrome patient, F02–98 cells, which are known to have reduced ATR activity (O'Driscoll et al., 2003
). As shown in Figure 6B, transient transfection of wild-type Mcl-1 in cells harboring the ATR mutation was unable to induce Chk1 phosphorylation, suggesting that ATR is required for Mcl-1–mediated Chk1 phosphorylation.
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| DISCUSSION |
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Interestingly, the functions of Mcl-1 appear to be very similar to those that have been reported for Claspin. Down-regulation of Claspin has been shown to inhibit Chk1 activation in response to DNA damage (Kumagai and Dunphy, 2000
; Chini and Chen, 2003
). However, unlike Claspin, Mcl-1's association with Chk1 does not depend on DNA damage because we observed some association in untreated cells (Figure 3B). It is possible that Mcl-1 plays a role in directing the phosphorylating kinase to Chk1 during S and G2 phases of cell cycle in unperturbed cells, and Claspin provides an additional layer of control by further activating Chk1 and consolidating the checkpoint response upon DNA damage.
It is noteworthy that Claspin was recently shown to be in the same complex as proliferating cell nuclear antigen (PCNA; Brondello et al., 2007
), which is an important cell cycle regulatory protein, suggesting Claspin may be a common link between DNA damage response and cell cycle machineries. Interestingly, Mcl-1 is the only member of Bcl-2 family that has previously been shown to interact directly with PCNA (Fujise et al., 2000
) placing Mcl-1 at the interface of apoptosis and cell cycle regulation. Based on these observations, a more relevant role of Mcl-1 in normal cell cycle regulation may be suggested, because we have found Mcl-1 (or the shorter snMcl-1 form of the protein) in the nucleus in several cell types (Jamil et al., 2005
), and Mcl-1 has also been shown to predominantly localize to the nucleus, where it associates with PCNA, in U2OS cells (Fujise et al., 2000
).
As we have mentioned earlier, our findings are based on treatments with etoposide or UV radiation that are at lower doses than those used in most studies. We were careful to use doses that caused G2 arrest, but did not cause significant apoptosis during the time course of the experiments. In fact, it is clear that higher doses than we have used here, of either etoposide or UV radiation, cause apoptosis together with loss of Mcl-1 expression (Nijhawan et al., 2003
; Germain and Duronio, 2007
). We cannot rule out that the increased Mcl-1 expression is also contributing to cell survival in cells treated with lower levels of DNA-damaging agents. Thus, a dual function for Mcl-1 can be suggested. It is possible that when damage is sustained, up-regulated Mcl-1 is involved in mediating the checkpoint response that allows members of the DNA damage response machinery to function. At the same time as the DNA is being repaired, Mcl-1 at the mitochondria may also play a role in providing survival until the repair has been completed.
Perhaps the most intriguing aspect of this study is that the findings may offer an explanation for the essential function of Mcl-1 that was demonstrated in studies of Mcl-1 knockout mice (Rinkenberger et al., 2000
), because those studies showed that there was no change in the extent of apoptosis in the Mcl-1–/– embryos. Similar to Mcl-1 knockout mice, knockout of either ATR or Chk1 are also embryonic lethal at a preimplantation stage (de Klein et al., 2000
; Liu et al., 2000
; Takai et al., 2000
). Besides playing a key role in DNA damage response, the essential functions of these genes are also likely to be to maintain normal DNA replication, as has been suggested for Chk1 (Kaneko et al., 1999
). As we and others have reported previously, growth of cells overexpressing Mcl-1 is dramatically inhibited, which is also consistent with a proposed role for Mcl-1 in orchestrating a checkpoint response. Indeed, we find that when high levels of Mcl-1 are present after transient overexpression, we detected an accumulation of cells in G2, consistent with the expected effects of increased Chk1 phosphorylation. During response to DNA damage, Chk1 phosphorylation is enhanced, and as we have also shown here, this can be independent of ATM (Kaneko et al., 1999
) and thus more dependent upon ATR. The results of this study also show that regulation of Chk1 phosphorylation in response to DNA damage is dependent on the presence of Mcl-1, because siRNA-mediated knockdown of Mcl-1 expression results in loss of DNA damage–induced Chk1 phosphorylation.
To better understand the molecular events that are controlling Mcl-1 functions in the nucleus, future studies should be aimed at finding the direct binding partners of Mcl-1. We have established in this study the presence of Mcl-1 in a complex that includes the checkpoint regulator Chk1, supporting the suggestion that a key function of Mcl-1 may be in the coordination of events required to generate appropriate response to DNA damage and maintenance of chromosome integrity. These newly characterized properties of an antiapoptotic member of the Bcl-2 family that has been extensively studied in recent years may lead to important new discoveries that expand our understanding of the important functions of Mcl-1.
| ACKNOWLEDGMENTS |
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| Footnotes |
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Address correspondence to: Vincent Duronio (vduronio{at}interchange.ubc.ca)
Abbreviations used: ATM, ataxia telangectasia mutated; ATR, AT mutated and Rad3 related; BH, Bcl-2 homology; Chk1, checkpoint kinase 1; Mcl-1, myeloid cell leukemia-1.
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