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Vol. 19, Issue 9, 3812-3822, September 2008
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*Department of Pharmacology, ¶Institute of Basic Medical Sciences, College of Medicine,
Institute of Biosignal Transduction, @Institute of Bioinformatics, College of Bioscience and Biotechnology, and Center for Gene Regulation and Signal Transduction Research, National Cheng Kung University, Tainan 701, Taiwan;
Graduate Institute of Physiology and Molecular Medicine, Department of Physiology, #Graduate Institute of Medicine, School of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan; and ||Center for Cancer Research Nanobiology Program, National Cancer Institute (NCI) Center for Cancer Research, NCI, National Institutes of Health, Frederick, MD 21702
Submitted September 24, 2007;
Revised June 2, 2008;
Accepted June 13, 2008
Monitoring Editor: Carl-Henrik Heldin
| ABSTRACT |
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| INTRODUCTION |
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Thrombomodulin (TM) is an important anticoagulant protein present on the surface of vascular endothelial cells (Dittman and Majerus, 1990
). TM forms a high-affinity complex with thrombin and results in approximately a 100-fold increase in the activation of protein C to execute anticoagulant effects (Esmon, 1993
). Recent studies have shown that TM also plays an important role in attenuation of the inflammatory response (Van de Wouwer and Conway, 2004
). One mechanism for TM's anti-inflammatory effect relates to the properties of activated protein C (APC). For example, APC has been found to inhibit endotoxin-induced production of tumor necrosis factor-
(TNF-
), interleukin (IL)-1β, IL-6, and IL-8 in cultured monocytes/macrophages (Okajima, 2001
). TM is also a critical cofactor for thrombin-mediated activation of the thrombin-activatable fibrinolysis inhibitor (TAFI), which is responsible for inactivation of complement factors C3a and C5a to protect against complement-mediated injury in the microvasculature (Campbell et al., 2002
). Aside from TM acting as a cofactor to mediate anti-inflammatory effects, TM is also reported as playing a direct role in regulating the anti-inflammatory response. Using transgenic mice that lack the N-terminal lectin-like domain of TM (TMLeD/LeD), it was found that the lectin-like domain of TM provides the vascular endothelium with anti-inflammatory properties by interfering with neutrophil adhesion to endothelial cells (Conway et al., 2002
). Another report indicates that the lectin-like domain of TM binds with a high-mobility group-B1 DNA-binding protein (HMGB1), a factor acting as an inflammatory mediator, thereby preventing its interaction with the receptor for advanced glycation end products (RAGE) and suppressing induction of proinflammatory events (Abeyama et al., 2005
).
Though TM plays an important role in modulating inflammation, unfortunately it appears that TM expression is reduced in inflammation. In vitro studies have demonstrated that endothelial TM expression is potently inhibited by bacterial endotoxin and inflammatory cytokines such as IL-1β and TNF-
(Moore et al., 1987
; Archipoff et al., 1991
). Two kinds of mechanisms have been proposed to mediate the loss of TM function: the inhibition of transcription and stimulation of endocytosis (Conway and Rosenberg, 1988
; Moore et al., 1989
). However, in the study of transcriptional regulation of TM gene expression, Lentz et al. (1991)
reported that the translational regulation of TM protein expression may occur under some conditions. Furthermore, it was observed that TM protein expression level was significantly decreased at 3 and 6 h, but recovered 12 h after lipopolysaccharide (LPS) treatment in rat sinusoidal endothelial cells. In contrast, the TM mRNA levels were reduced at 6 and 12 h yet slightly recovered 24 h after LPS treatment (Kume et al., 2003
). Lack of correlation between protein and mRNA expression patterns indicates the translational regulation mechanism involved in TM protein expression. But, no further research has been conducted to study this mechanism.
In this study, we found the TM 5' untranslated region (UTR) possesses the IRES activity, which controls the TM protein expression. The RNA-binding protein HuR interacts with TM 5'UTR and negatively regulates TM protein expression under IL-1β treatment is identified. Finally, we observed that this translational repression mechanism is functional in an animal model of sepsis.
| MATERIALS AND METHODS |
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were obtained from Calbiochem (San Diego, CA).
Cell Culture and Transient Transfection
A549 cells (human lung adenoma cell line) were grown in F-12K nutrient mixture (GIBCO, Rockville, MD) supplemented with 10% FBS, 100 µg/ml streptomycin, and 100 U/ml penicillin. Cells were propagated using standard culture techniques and maintained in a humidified 37°C, 5% CO2 environment. Transfection was performed using Lipofectamine 2000. All transfection assays were performed in triplicate on at least three independent experiments.
Plasmid Construction
The fragments of human TM promoter P1-Luc (nt –246 to + 150) and P2-Luc (nt –246 to + 2) were amplified from normal human genomic DNA. These PCR products were cloned into plasmid pGL3 vector (Promega, Madison, WI) using the HindIII and NcoI restriction sites. The full-length human TM 5'UTR (+169 to +1) fragment was amplified from normal human genomic DNA using primers TM-5'UTR-SpeI-F (5'-ACTAGTCATGTCAGAGGCTGCCTC GCAG-3') and TM-5'UTR-NcoI-R (5'-CCATGGGTTACCCAGGCGCGCCGCGTG-3'). The PCR product was cloned into the pGL3 promoter vector digested by HindIII and NcoI restriction sites, and the resulting plasmids were designated pTM 5'UTR. Bicistronic reporter plasmids pRF and phpRF were a generous gift of A. E. Willis (The University of Nottingham, United Kingdom). Fragments of the TM 5'UTR were inserted into the SpeI and NcoI sites of these vectors and named as pRTMF and phpRTMF. The MS2hp vector was constructed by inserting the hairpin structure fragment, which bound with MS2 protein into the pGEM-T vector, and the MS2hp TM 5'UTR was created by cloning the TM 5'UTR fragment behind the MS2 hairpin fragment. The HuR protein expression vectors were constructed by amplifying the coding region of HuR and inserting them into the expression plasmid pcDNA3.1 V5 tag (Invitrogen) and pGEX6p-1.
Northern Blot Analysis
Twenty micrograms of total RNA per lane were separated in 1.2% (wt/vol) agarose/formaldehyde gels and transferred onto Hybond-N nylon membrane. Hybridization was performed in ExpressHyb hybridization solution (BD Bioscience, San Jose, CA) at 68°C for 2 h. The luciferase probe was generated by PCR amplification from luciferase gene by using forward primer: 5'-GGTTCCATCTGCCAGGTATCAGG-3' and reverse primer: 5'-CGTCTTCGTCCCAGTAAGCTATG.-3'. The 300-bp probe was labeled by Rediprime II random prime labeling system (Amersham Bioscience, Piscataway, NJ). After hybridization and wash, the blots were exposed overnight at –80°C to x-ray film.
In Vitro RNA Synthesis and RNA Probe Pulldown Assay
The plasmids MS2hp, MS2hp TM 5'UTR and pTM 5'UTR were linearized to serve as templates to generate RNA probes for pulldown or translational assays. The RNAs were synthesized using the Riboprobe in vitro Transcription system (Promega). Briefly, in each 100 µl of reaction mixture, 1 µg of linearized DNA template was transcribed by T7 polymerase in the presence of 2.5 mM UTP, CTP, ATP, and GTP. After 2-h incubation at 37°C, the reaction was stopped by adding 2 U of RQ1 RNase-free DNaseI (Promega) for 15 min at 37°C. The RNA was purified with MicroSpin G-25 columns. For the RNA probe pulldown assay, 0.5 µg or 1 µg of Ms2hp TM 5'UTR RNA was incubated with A549 cytosol lysates for 1 h, respectively. After incubation, 10 µg of recombinant glutathione S-transferase (GST)-MS2 proteins or GST proteins were added to the reaction and incubated overnight at 4°C. Complexes were isolated using glutathione Sepharose 4B, and RNA-binding proteins in the pulldown material were analyzed by Western blot analysis using HuR antibodies.
RNA Immunoprecipitation Assay
Cytoplasmic extracts were incubated with 5 µg of HuR mouse mAb (Santa Cruz Biotechnology) in immunoprecipitation (IP) buffer (10 mM HEPES, pH 7.9, 100 mM NaCl, 1 mM MgCl2, 0.1% NP-40, 2% glycerol, 1 mM DTT, and 1x protease inhibitor) at room temperature (RT) for 2 h. For the control IP reaction, mouse IgG (5 µg) was used to perform this experiment, and then an equal volume of protein A Sepharose beads was added to the mixture and continually incubated for 2 h at RT. The protein A Sepharose beads were pelleted, washed with 1 ml of IP buffer, and suspended in 0.5 ml of TRI-Reagent (Invitrogen). The RNA was extracted, and RT-PCR was conducted with specific primers for TM or luciferase gene.
Ribosome Complex Pulldown
A549 cells were harvested in phosphate-buffered saline (PBS) and pelleted and suspended in lysis buffer (10 mM HEPES, pH 7.9, 40 mM KCl, 3 mM MgCl2, 0.5% NP-40, 5% glycerol, 2 mM DTT, and 1x protease inhibitor cocktail). Cells were kept on ice for 10 min, and lysates were centrifuged at 5000 rpm for 10 min, and the supernatant was saved as cytoplasmic lysate. 2 µg of ribosomal protein S6 antibody (Santa Cruz Biotechnology) was added to 800 µg cytoplasmic lysate and incubate at 4°C overnight. Protein A/G-agarose was added to the mixture to pull down the ribosome complex. The mRNAs bound with ribosome complex were extracted with TRI-reagent and analyzed the TM mRNA expression level by quantitative RT-PCR.
RNA Interference Assay
A chemically synthesized small interfering RNA (siRNA; 5'-AAGAGGCAAUUACCAGUUUCAtt-3') targeted to the human HuR mRNA sequence was transiently transfected (final concentration 50 nM) into A549 cells (60% confluent in six-well plates) using Lipofectamine 2000. siRNA targeted to enhanced green fluorescent protein (EGFP) was used as a control. Forty-eight hours after transfection, whole cell lysates were collected for assessment of protein expression level or luciferase activity.
RT-PCR and Quantitative PCR
Total RNA was isolated using the TRI-Reagent, and 3 µg of RNA was subjected to reverse transcription with SuperScript II reverse transcriptase (Invitrogen). 1 µl of RT product was under 32 cycles of PCR analysis. The primers used are listed as follow: TM; forward primer: 5'-TGAGCGTTATTGGTCGGCAGCCT-3' and reverse primer: 5'-CACAGGTAGGGTGACTCAGG-3'; Luciferase gene; forward primer: 5'-GGTTCCATCTGCCAGGTATCAGG-3' and reverse primer: 5'-CGTCTTCGTCCCAGTAAGCTATG.-3'; and Renilla gene; forward primer: 5'-AAAGGTGAAGTTCGTCGTCCAAC-3' and reverse primer: 5'-TTTGAGAACTCGCTCAACGAACG-3'. The quantitative PCR analysis was conducted on LightCycler 480 real-time PCR system by using LightCycler FastStart DNA Master SYBR Green I reagent. The primers used are listed as follow: human TM; forward primer: 5'-CCACTGCTACCCTAACTACG-3' and reverse primer: 5'-TGTAGCCTTCAGGGCACTCA-3'; rat TM; forward primer: 5'-CGAATGCCTCACCAATGAA-3' and reverse primer: 5'-TACCGTCGGATTGCTTGAT-3'; Luciferase gene; forward primer: 5'-GGATTACAAGATTCAAAGTGCG-3' and reverse primer: 5'-TGATACCTGGCAGATGGAAC; and rat actin; forward primer: 5'-GGGTGTGATGGTGGGTAT-3' and reverse primer: 5'-TTGTAGAAAGTGTGGTGCCAAA-3'.
Animal Model of Polymicrobial Sepsis
Male Sprague Dawley rats weighing 270–320 g were fasted overnight with free access to water. Sepsis was induced by cecal ligation and puncture (CLP) in accordance with a slightly modified previously described method (Wichterman et al., 1980
). Under holthane anesthesia, a laparotomy was performed, and the cecum ligated with a 3-0 silk ligature and punctured twice with an 18-gauge needle. The cecum was then returned to the peritoneal cavity, and the abdomen was closed in two layers. In the sham-operated rats, a laparotomy was performed, and the cecum was manipulated but neither ligated nor punctured. All animals were individually resuscitated with 4 ml of isotonic sodium chloride solution per 100 g of body weight by sc injection at the completion of surgery and at 9 h after surgery (Hsieh et al., 2004
). The study was conducted in accordance with National Institutes of Health's Guidelines for the use of experimental animals.
Immunofluorescence Microscopy
Before sacrifice, rats were perfused with 0.9% normal saline under anesthesia. Liver tissue was isolated and fixed by 4% paraformaldehyde overnight at 4°C. Then, the tissue was transferred to 30% sucrose in PBS and stored at 4°C for 3 d. Liver specimens were embedded in optimal cutting temperature (OCT) compound (Sakura Finetek, Torrance, CA) cooled down with liquid nitrogen and then maintained at –80°C. The frozen OCT-embedded tissues were cut at 10-µm thickness and placed on silane-coated glass slides (DAKO, Carpinteria, CA). After blocking with 10% bovine serum albumin and 1% Triton X-100 in 1x PBS for 60 min at RT, sections were incubated with HuR mAb at 1:100 dilution or TM antibody at 1:100 dilution in 1x PBS containing 0.1% bovine serum albumin and 0.1% Triton X-100 for 2 h at RT and then overnight at 4°C and washed twice with PBS, followed by incubation with the secondary antibody conjugated with Alexa Fluor 568 (Molecular Probes at 1:200 dilution) for 1 h at RT. After washing three times with PBS, the nuclei were revealed by 4, 6-diamidino-2- phénylindole (DAPI; Sigma at 1:10,000). Confocal images were acquired on an Olympus IX71 confocal laser scanning system using a 100x immersion objective (Melville, NY).
| RESULTS |
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G values) –80.2 kcal/mol (Mathews et al., 1999
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HuR Interacts with the TM 5'UTR
Internal initiation trans-acting factors (ITAFs), such as UNR, PTBP1, and PCBP1, were shown to modulate the IRES function (Stoneley and Willis, 2004
). To investigate the molecular mechanism of how TM IRES regulates TM protein expression, we used the MS2 hairpin probe to perform a pulldown assay combined with the Western blot analysis to identify the possible trans-acting factors. The total cell lysates derived from A549 were incubated with MS2hp RNA or MS2hp TM 5'UTR RNA probes and then were pulled down by GST-MS2 fusion proteins. Using Western blot analysis with different ITAF antibodies, we found HuR bound with the TM 5'UTR in a dose-dependent manner (Figure 3A).
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HuR Represses TM IRES-mediated Protein Translation
It is interesting to know the functional role of HuR in the TM 5'UTR. To address this question, the bicistronic constructs, pRF, pRTMF, and pRHRVF and the pcDNA-HuR expression plasmid were transiently cotransfected into the A549 cells. As shown in Figure 4A, HuR inhibited the TM IRES activity, but not the pRF and human rhinovirus IRES (pRHRVF) activity. On the other hand, under depletion of the HuR protein using siRNA technology, we observed the IRES activity increased when HuR protein expression was reduced (Figure 4B). Therefore, these results indicate HuR interacts with the TM 5'UTR and represses the cap-independent IRES activity.
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IL-1β Inhibits TM IRES Activity through Increasing the Interaction between HuR and TM 5'UTR
As shown in Figure 1A, the translational regulation mechanism may contribute to the inhibitory effect of IL-1β on the TM promoter construct P1-Luc. Whether IL-1β signal represses the TM protein translation in A549 cells is a key issue to be addressed. To answer this question, the ribosome complexes were pulled down by 40S ribosomal protein S6 antibody and then extracted the mRNAs bound with the ribosome complexes. TM mRNA expression level in ribosome complex was detected by quantitative RT-PCR and normalized with the level of ribosome bound GAPDH mRNA. Besides, the total TM mRNA level was also detected in A549 cell treated with or with IL-1β. From Figure 5A, we found the level of TM mRNA associated with ribosome complex was decreased after IL-1β treatment, whereas the TM mRNA expression level was slightly increased after IL-1β treatment for 3 h. It indicates the decrease in ribosome bound TM mRNA is not due to the decrease in total TM mRNA. On the other hand, IL-1β signal blocks the interaction of TM mRNA with ribosome complex and then shuts down TM protein synthesis. Furthermore, we found that the binding of HuR and TM mRNA was increased after IL-1β treatment by using RNA-IP method (Figure 5B). This result implies HuR may play a role in repressing TM protein synthesis under IL-1β treatment.
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Increases of Interaction between HuR and TM mRNA in the Liver Tissue of Septic Rat
Sepsis is a systemic inflammatory condition and frequently is complicated by the development of pathological thrombosis. Unfortunately, the important anticoagulant TM protein is decreased in septic patients (Faust et al., 2001
). This result prompts us to study whether HuR also represses TM protein synthesis in vivo during sepsis. To address this question, the technique of CLP was used to induce sepsis in rat model, and the liver tissue was used for the examination of intracellular distributions of both HuR and TM. From Figure 6A, we found the TM protein expression was reduced in the liver tissue of septic rat as other groups reported (Kume et al., 2003
). In sham group, HuR was expressed in both cytosol and nucleus. However, the HuR was concentrated only in the cytoplasm region under sepsis conditions. TM protein expression in septic rat was also quantified by Western blot analysis. We found that TM protein expression was decreased after CLP for 3 h and became very low level at 6 h, but TM mRNA expression level detected by quantitative PCR was shown increase in CLP-3 h and minor decrease in CLP-6 h (Figure 6B). It indicated TM protein synthesis was blocked under CLP condition. To further address whether cytosolic HuR binds with TM mRNA to repress protein synthesis during sepsis, RNA-IP was conducted with HuR antibody followed by RT-PCR and quantitative RT-PCR to detect the TM mRNA expression level. The result showed that the interaction of HuR with TM mRNA was significantly increased under septic condition (Figure 6C). These results indicate the increased interaction between HuR and TM mRNA may play a role in the reduction of TM protein expression in sepsis.
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| DISCUSSION |
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The importance of translation regulation is highlighted by the studies in yeast and mammalian cells that reported a striking lack of correlation between the steady-state levels of mRNAs, as determined using microarrays and the proteins (i.e., proteomes) encoded by those mRNAs (Gygi et al., 1999
; Ideker et al., 2001
). Protein translation occurs in three steps: initiation, elongation, and termination. In the initiation steps, two kinds of mechanisms are proposed: a cap-dependent scanning mechanism and an IRES-driven mechanism (Gray and Wickens, 1998
). Cap-dependent scanning mechanism accounts for translation of the majority of cellular mRNA; however, nearly 10% of cellular mRNA can be translated by the IRES-driven mechanism (Pickering and Willis, 2005
). Translation by internal ribosome entry was first identified in picornaviruses (Pelletier and Sonenberg, 1988
), but a number of cellular mRNAs containing IRESs have subsequently been found, including basic fibroblast growth factor (Vanger et al., 1995
), c-myc (Stoneley et al., 1998
), p53 (Yang et al., 2006
), and HIF-1
(Lang et al., 2002
). Till now, about 80 cellular IRES elements have been identified, almost half found in genes encoding oncogenes, growth factors, and proteins involved in the regulation of apoptosis. This suggests that IRES-dependent translation is an important regulatory mechanism for the maintenance of cellular homeostasis, especially when cap-dependent initiation is inhibited (Baird et al., 2006
). Here, we provide evidences that TM 5'UTR acts as an IRES by using a well-known bicistronic construct analysis (Stoneley et al., 1998
). The quantities of firefly luciferase mRNA and Renilla luciferase mRNA were also examined to rule out whether the increased protein expression was due to the TM 5'UTR containing the cryptic promoter activity (Figure 2). TM is a multiple function protein involved in the anticoagulation, anti-inflammation, and cancer development processes (Weiler and Isermann, 2003
). Therefore, the 5'UTR bearing IRES strengthened the important roles of TM in maintenance of homeostasis in both physiological and pathophisiological conditions.
Regulation of IRES activity was dependent on canonical translation initiation factors and noncanonical ITAFs for efficient initiation of translation (Stoneley and Willis, 2004
). It has been proposed that the ITAFs interact with IRESs to maintain or to attain the correct 3D structure required for efficient assembly of the 48S ribosomal initiator complex (Pilipenko et al., 2000
). Several ITAFs were identified to regulate IRES activity such as polypyrimidine tract binding protein, poly r(C) binding protein 1, upstream of N-ras (UNR), HuR and La protein, which are all cellular RNA-binding proteins with multiple function in cells (Vanger et al., 2001
). In this study, we identified HuR as a negative regulator on TM IRES. Using in vitro translation assay and transiently transfected dicistronic construct assay, we found that overexpression of HuR inhibited the TM IRES activity and consequently the luciferase protein expression. This phenomenon was also observed in endogenous TM protein expression under overexpressed or reduced HuR protein expression (Figure 4). Overall, these results imply the IRES in the TM 5'UTR regulates TM protein expression and the IRES activity is suppressed by HuR.
HuR is a ubiquitously expressed RNA-binding protein belonging to the embryonic lethal abnormal vision (ELAV) family, which was originally identified in Drosophila melanogaster as essential for neural development, and the major functional role of HuR was demonstrated to interact with mRNAs bearing AU-rich sequences (AREs) and to stabilize these mRNAs (Brennan and Steitz, 2001
). Numerous inflammation-related genes, such as TNF-
(Rajasingh et al., 2006
), COX-2 (Sureban et al., 2007
), inducible NO synthase (Linker et al., 2005
), and eotaxin (Atasoy et al., 2003
), have been demonstrated to bind with HuR. It highlights that HuR plays an important role in inflammation. HuR acting as a translational regulator through binding with 3'UTR or 5'UTR was also reported recently. For example, HuR bound with the highly conserved AU-rich sequence in 3'UTR inhibiting Wnt-5a mRNA translation (Leandersson et al., 2006
), p53 mRNA binding to polysomes and the increased translation was also identified as being HuR-mediated (Galban et al., 2003
), and HuR repressed p27 translation via an IRES element in the p27 5'UTR (Kullmann et al., 2002
). However, the detailed mechanism of HuR-mediated translational suppression is still unclear. Meng et al. (2005)
proposed that HuR blocked the activity of the IGF-IR IRES through arresting the IRES-associated translation preinitiation complex in an inactive state. Another study indicated HuR interacted with the translational silencer TIA-1 to reduce the translation of TNF-
and COX-2 (Katsanou et al., 2005
). Therefore, characterization of the proteins involved in the HuR-TM IRES complex will give us more information about the HuR-mediated translational repression mechanism in TM protein synthesis.
Because HuR stabilizes numerous inflammatory-related mRNAs and blocks the TM protein expression, HuR plays as a proinflammatory factor. However, Katsanou et al. (2005)
reported that HuR acts as a negative posttranscriptional modulator to reduce the translation of TNF mRNA in mouse macrophages after LPS challenge. This contradictory result may due to the different cell lines and animal model used for studying. Recently, the low-molecular-weight inhibitors for HuR were identified (Meisner et al., 2007
). These compounds interfered with the formation of HuR dimers and consequently abolished the binding ability of HuR with RNA, and the cytokines expression levels were decreased in the activated primary human monocytes under these compounds treatment. Therefore, these compounds will be valuable tools to study the exactly functional role of HuR in inflammation.
To sum up, we reported a novel translational regulation mechanism in the suppression of TM protein expression by proinflammatory cytokines. Because TM plays an important role in anticoagulation and anti-inflammation response after severe inflammation, especially in severe sepsis, prevention of the decrease of TM protein could be a good way to increase the quantity of activated protein C and prevent the microvascular thrombosis. Therefore, blocking the interaction between HuR and TM 5'UTR through inhibiting the HuR activity will provide a potential new therapeutic strategy in treating severe sepsis.
| ACKNOWLEDGMENTS |
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| Footnotes |
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These authors contributed equally to this work. ![]()
Address correspondence to: Joseph T. Tseng (tctseng{at}mail.ncku.edu.tw) or Wen-Chang Chang (wcchang{at}mail.ncku.edu.tw)
Abbreviations used: CLP, cecal ligation and puncture; IRES, internal ribosome entry site; IL-1β, interleukin 1β; TNF-
, tumor necrosis factor-
; TM, thrombomodulin; 5'UTR, 5' untranslated region.
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