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Vol. 20, Issue 1, 90-101, January 1, 2009
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*Department of Genetics, School of Medicine, Case Western Reserve University, Cleveland, OH 44106-4955; and
Departments of Biology and Genetics, Program in Molecular Biology and Biotechnology, Curriculum in Genetics and Molecular Biology, and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599-3280
Submitted January 10, 2008;
Revised September 17, 2008;
Accepted October 7, 2008
Monitoring Editor: Karsten Weis
| ABSTRACT |
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| INTRODUCTION |
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95% of SMA cases (Lefebvre et al., 1995
Interestingly, the human genome contains a second locus, SMN2, which produces reduced amounts of full-length SMN protein and cannot fully compensate for the loss of SMN1 (Lorson et al., 1999
; Monani et al., 1999
). Complete loss of Smn function results in early embryonic lethality in mice (Schrank et al., 1997
); animals that carry low-copy SMN2 transgenes survive embryogenesis but die postnatally, yet those with high-copy transgenes are completely viable (Hsieh-Li et al., 2000
; Monani et al., 2000
). Thus, SMA can be viewed as a "protein-dosage" disease, an interpretation that correlates well with the fact that SMA severity is inversely proportional to SMN protein levels (Coovert et al., 1997
; Lefebvre et al., 1997
).
SMN is part of a large, oligomeric protein complex that is essential for a number of distinct steps in the biogenesis of metazoan Sm-class small nuclear ribonucleoproteins (snRNPs; reviewed in Matera et al., 2007
). SMN localizes diffusely throughout the cytoplasm, with intense nuclear signals corresponding to Cajal bodies (Liu and Dreyfuss, 1996
; Matera and Frey, 1998
). Based on the known protein–protein interactions, organization of the complex centers around SMN, which directly interacts with itself, Gemin2, Gemin3, Gemin5, and Gemin8 (Liu et al., 1997
; Lorson et al., 1998
; Charroux et al., 1999
; Meister et al., 2000
; Baccon et al., 2002
; Gubitz et al., 2002
; Pellizzoni et al., 2002a
; Carissimi et al., 2006a
; Battle et al., 2007
; Otter et al., 2007
). Gemin8 is thought to recruit Gemin6, Gemin7, and unr-interacting protein (UNRIP/STRAP), whereas Gemin3 brings Gemin4 into the complex (Charroux et al., 2000
; Baccon et al., 2002
; Carissimi et al., 2005
, 2006b
). The SMN complex binds directly to the snRNA and to Sm proteins in order to coordinate snRNP assembly (Fischer et al., 1997
; Liu et al., 1997
; Pellizzoni et al., 2002b
; Yong et al., 2002
; Battle et al., 2006
). We previously demonstrated by RNA interference (RNAi) knockdown that SMN, Gemin2, Gemin3, and Gemin4 are each required for efficient snRNP assembly in HeLa cells (Shpargel and Matera, 2005
). Current theories suggest that Gemins and associated proteins function together to mediate the various steps of snRNP biogenesis (Shpargel and Matera, 2005
; Feng et al., 2005
; Girard et al., 2006
; Lemm et al., 2006
). However, despite the excellent correlation between SMN protein levels and disease phenotype, mutations in other members of the SMN complex have not been associated with human disease.
Genetic analysis in model organisms provides a unique opportunity to study factors contributing to disease pathogenesis. Drosophila SMN (dSMN) has been identified on the basis of sequence and functional conservation, and null mutations within the gene are larval lethal in the second and third instar stages (Chan et al., 2003
; Rajendra et al., 2007
). These larvae exhibit motor and neuromuscular defects. We have also generated an adult model for Drosophila SMA. A hypomorphic mutation, called SmnE33, was created by imprecise excision of a P-element residing in the upstream control region (Rajendra et al., 2007
). SmnE33 homozygotes exhibit reduced dSMN protein levels in the thorax of the adult fly. This deficiency leads to severe neuromuscular defects, including flightlessness, all of which can be rescued by expression of a YFP-Smn transgene (Rajendra et al., 2007
). Notably, SMN is a sarcomeric protein in both flies and mice, and because snRNPs are absent from myofibrils, SMN likely performs a tissue-specific function in muscle (Rajendra et al., 2007
). Other members of the Drosophila SMN complex have not been described.
Here, we identify and characterize dGemin3 (dGem3) as a member of the Drosophila SMN complex. Like its human counterpart, dGem3 interacts directly with dSMN in vitro and in vivo. Furthermore, these two proteins colocalize in the Drosophila Cajal body and are required for efficient assembly of Sm snRNPs. Previously uncharacterized transposon insertions in Gemin3 and Smn exhibit larval motor defects, developmental delay, and a failure to pupate. Our results demonstrate the conservation of Gemin3 function in the fruitfly SMN complex and establish its essential role in various aspects of Drosophila development.
| MATERIALS AND METHODS |
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Recombinant Protein Expression and S2 Cell Transfections
GST-dSMN and His-dGemin3 were expressed in BL21-star bacteria (Invitrogen) by 1 mM IPTG induction for 3 h. Lysate was extracted by sonication and passed over glutathione or Ni-agarose beads. S2 cells were transfected using Cellfectin as directed (Invitrogen).
Antibodies
GST (Santa Cruz Biotechnology, Santa Cruz, CA; 1:1000), His (Lab Vision, Fremont, CA; 1:1000), GFP (Roche, Indianapolis, IN; 1:1000), myc (Santa Cruz, 1:1000), SMN (Transduction Laboratories, Lexington, KY; 1:5000), SNF (U2B'', 1:1000), and tubulin (anti-rabbit; Sigma-Aldrich, St. Louis, MO) antibodies were used for Western blotting. Anti-myc (Santa Cruz, 1:40) was used for immunofluorescence. Anti-myc antibodies or Flag-conjugated agarose beads (Sigma) were used for immunoprecipitation in modified RIPA buffer.
Sm Assembly Assay
Smn, Gemin3, and LacZ dsRNAs were transcribed in vitro from PCR products flanked with T7 promoters. Drosophila S2 cells were placed in SF-900 media containing 14 µg/ml double-strand RNA (dsRNA). Extracts were generated 3 d after transfection using the Ne-Per nuclear/cytoplasmic extraction kit as directed (Pierce, Rockford, IL) and dialyzed in reconstitution buffer (20 mM HEPES-KOH, pH 7.9, 50 mM KCl, 5 mM MgCl2, and 0.2 mM EDTA (Pellizzoni et al., 2002a
). Forty micrograms of cytoplasmic extract was loaded on a gel for Western blotting analysis to confirm knockdown. For the assembly assay, wild-type U1 snRNA and U1 snRNA containing a deletion of the Sm assembly site were in vitro transcribed from PCR products in the presence of P32-rUTP and m7G cap analogue (Promega). Equivalent amounts of radiolabeled U1 snRNA (n = 100,000 cpm) were incubated in 100 µg of cytoplasmic extract at 22°C for 40 min in reconstitution buffer. Assembled snRNPs were precleared with protein G beads before immunoprecipitation with 15 µl (1.5 µg) Y12 antibody in RSB-100 buffer (600 mM NaCl, 20 mM Tris-HCl, pH 7.4, 2.5 mM MgCl2, and 0.01% NP40). Immunoprecipitation products were denatured in formamide loading buffer, run on a 6% acrylamide TBE-urea gel, and exposed to a phosphorimager.
Fly Stocks
SmnA (Smn73Ao, G202S; Chan et al., 2003
), SmnB (S201F; Chan et al., 2003
), SmnC (PBac{WH}Smnf05960; Thibault et al., 2004
), SmnD (PBac{WH}Smnf01109; Thibault et al., 2004
), and SmnF (PBac{PL}Smn00733; Häcker et al., 2003
) were maintained over TM3, P{ActGFP}JMR2, Ser[1] or TM6B, P{Ubi-GFP.S65T}PAD2, Tb[1] balancer chromosomes. Gem3A (Pbac{RB}Gem3e03688; Thibault et al., 2004
) and Gem3B (P{PZ}Gem3rL562; Spradling et al., 1999
) were maintained on TM6B, Tb balancer chromosomes. A deletion removing the Gemin3 region, Df(3L)ED4457, was obtained from the Bloomington Stock Center (Bloomington, IN). Alleles were recombined to create multiple insertions on a single chromosome. Gem3B-rev was created by precise excision of Gem3B. Timed matings were allowed to proceed for 6 h, and larvae were collected for phenotypic analyses on subsequent days. For the transgenic construct, the Flag tag was added to the Drosophila Gemin3 cDNA by PCR amplification. The Flag-Gemin3 product was cloned into pUAST and sent to BestGene, (Chino Hills, CA) for embryo injection and transgene screening. The YFP-Smn transgene (a gift from J. Gall, Carnegie Institution of Washington, Baltimore, MD) has been previously characterized (Liu et al., 2006
; Rajendra et al., 2007
).
| RESULTS |
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Drosophila Gemin3 Is Required for Efficient snRNP Assembly
SMN and Gemin3 are essential for formation of the Sm protein core RNP in human cells (Shpargel and Matera, 2005
). We utilized an Sm core assembly assay to investigate whether dGem3 plays a similar conserved role in flies. As described in Rajendra et al. (2007)
, this assay uses cytoplasmic extracts prepared from S2 cell lysates depleted for individual components by RNAi. Radiolabeled U1 snRNA was incubated in these lysates, and its assembly with Sm proteins was assayed by coimmunoprecipitation with anti-Sm antibodies (mAb Y12). We performed dsRNA-mediated RNAi on S2 cells to deplete dSMN and dGem3 proteins (Figure 3A). Western blotting of lysates derived from untransfected S2 cells (mock) or S2 cells treated with LacZ (control), Smn, or Gemin3 dsRNA demonstrated efficient and specific knockdown of dSMN and dGem3 compared with the Tubulin loading control. In each case, the cells were transfected with myc-dGem3 to monitor levels of dGem3 knockdown, because of the unavailability of an antibody targeting the endogenous protein. Interestingly, RNAi of dGem3 resulted in a moderate codepletion of dSMN (Figure 3A). As shown in Figure 3B, cytoplasmic extracts were incubated with either radiolabeled wild-type U1 snRNA (+) or mutant U1 snRNA (
), which lacks the Sm-binding site. Extracts were incubated at nonpermissive (4°C) or permissive (22°C) temperatures for the assembly assay (Figure 3B). Depletion of dSMN and dGem3 significantly reduced Sm core assembly (p < 0.005) relative to the mock or LacZ controls. Quantification of three separate experiments verified a 50% reduction in Sm core assembly activity when dSMN and dGem3 were depleted (Figure 3C). We conclude that the function of Gemin3 in snRNP assembly is conserved in invertebrates.
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Long-lived Smn and Gemin3 Mutants Fail to Pupate
In an effort to draw correlations with SMN complex function, we compared Gem3A and Gem3B mutants to four previously characterized Smn alleles (SmnA to SmnD; Chan et al., 2003
; Rajendra et al., 2007
) and one previously uncharacterized allele, PBac{PL}Smn00733, which we designate SmnF (Figure 4A; Häcker et al., 2003
). Similarly, each of the Smn and Gemin3 mutants are larval lethals and no homozygous pupae or adult flies were observed (data not shown). To better establish the critical lethal phases of the Smn and Gemin3 mutants, we performed a temporal analysis of heterozygous intercrosses. These experiments revealed that a certain fraction of the SmnD, SmnC, and SmnA homozygous larvae die by 3 d post egg laying (DPE; corresponding to the second instar larval stage in control animals,
2 p < 0.001; Figure 5A). SmnD and SmnC appeared to be the most severely affected, with very few larvae surviving past day 5 (third instar; Figure 5B). Notably, whereas SmnB and SmnF exhibited moderate viability defects at the third instar time point (
2 p < 0.0002), approximately one-third of the homozygous larvae (i.e., 10–12% of the total) survived beyond day 8, a period wherein the control wild-type and heterozygous larvae have already pupated (Figure 5C). Incredibly, a fraction of the SmnF larvae survived for more than 3 wk without pupating (Figure 5D). Although none of the SmnB homozygotes survived to day 25 (Figure 5D), a large fraction of them survived to day 8 (Figure 5C); some of these animals formed pseudopupae before dying (data not shown). On the basis of these and other phenotypic analyses, we conclude that the Smn alleles described to date (Chan et al., 2003
; Rajendra et al., 2007
; this study) can be ranked in order of decreasing severity as follows: D > C > A > B > F > E33.
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2 p < 0.004). Similar to the results of the SmnF intercross, 30% of Gem3A and 15% of Gem3B homozygous larvae survived to day 8 after egg laying, but failed to pupate (Figure 5C). Comparable to SmnB, Gem3A mutants occasionally formed pseudopupal cases (data not shown). Unlike the stronger Smn alleles (A–D), but similar to SmnF, a small fraction of Gem3A and Gem3B homozygotes survived to day 25 (Figure 5D). Double homozygotes for the Gem3B and SmnF insertions (illustrated as Gem3B, SmnF in Figure 5) displayed a phenotype similar to that of the individual mutations. In other words, homozygous loss of both genes did not significantly enhance the phenotype, except at the longest time point (Figure 5D). Thus, although dSMN and dGem3 work together in snRNP assembly, complete loss of function of both genes is equivalent to the loss of either one of them. Notably, a Gemin3 revertant allele, Gem3B-rev, recovered the ability to pupate and is fully viable (data not shown). Crossing Gem3A and Gem3B to the Df(3L)ED4457 deletion did not enhance the larval lethality phenotype (data not shown). We conclude that Smn and Gemin3 are essential for larval viability and pupation.
YFP-dSMN Overexpression Fails to Rescue Gemin3 Phenotypes
Because depletion of dGem3 by RNAi in S2 cells resulted in codepletion of dSMN (Figure 3A), we compared dSMN levels in the Gemin3 mutants to those of the five characterized Smn alleles. Larval lysates (4 DPE) were prepared and analyzed by Western blotting with anti-dSMN antibodies. As reported previously (Rajendra et al., 2007
), the mutant Smn larvae expressed little or no dSMN during the phenocritical stage (Figure 6A). A certain degree of variability in the levels of dSMN was observed for the SmnA and SmnB alleles from preparation to preparation (Figure 6A and Rajendra et al., 2007
). Interestingly, Gem3A and Gem3B homozygotes also expressed reduced levels of dSMN protein (Figure 6A), reminiscent of the results obtained in cell culture (Figure 3A). Importantly, transgenic expression of Flag-dGem3 in the Gemin3 mutant background (Figure 4B, compare dSMN input lanes) or reversion of the lethal phenotype by excision repair (Figure 6A) were each able to rescue dSMN levels. Thus, mutations in Gemin3 result in a corresponding depletion of dSMN, which may contribute to the phenotype.
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Smn and Gemin3 Mutant Larvae Exhibit Growth Defects
Although a fraction of the Gem3A, Gem3B, and SmnF homozygotes survived as larvae beyond 25 DPE, the mutants were by no means normal. In fact, by day 4, SmnF and Gemin3 mutant larvae appeared runted in size (Figure 7A). Wild-type or Gem3B-rev control larvae measured >3.0 mm in length and averaged
0.8 mm in width. Conversely, Smn and Gemin3 mutant alleles generally averaged only 1.5–2.0 mm in length and 0.4 mm in width (Figure 7, B and C; except for SmnB, all p < 0.0001). SmnB homozygotes were intermediate in size, averaging only 0.6 mm in width (a significant reduction, p < 0.002), but were of normal length (2.9 mm, p > 0.3). Analysis of the larval mouth hooks at 4 DPE revealed that the SmnF and Gemin3B homozygotes are more similar to second instar larvae, because similarly staged wild-type larvae have entered the third instar and have more highly serrated mouth hooks (Figure 7D). Therefore Smn and Gemin3 mutant larvae are significantly smaller than controls and appear to be developmentally arrested.
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14 mm during the 20 s; Smn and Gemin3 mutant larvae traveled at most 5 mm over the same interval (mutant p < 5 x 10–6). As shown in Figure 8B, SmnB again displayed the least severe phenotype. Thus, the motor defects originally observed in SmnA and SmnB larvae (Chan et al., 2003
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| DISCUSSION |
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The Drosophila SMN Complex and Ecdysone Signaling
Although database searches suggest that many of the SMN complex proteins are not conserved in the fly, putative orthologues of Gemin2 (dGemin2, CG10419), Gemin5 (rigor mortis/dGemin5; CG30149), and UNRIP/STRAP (wmd; CG3957) can be identified. Several lines of evidence suggest that these proteins function together. We have shown that endogenous dSMN copurifies with Flag-dGemin3 (Figures 2 and 4) and Flag-dGemin2 (K. Praveen and A.G. Matera, unpublished results). While this manuscript was under revision, Kroiss et al. (2008)
also reported that dSMN forms complexes with dGem3 in S2 cells. However, dGem3 appears to be weakly or transiently associated with dSMN, as this protein was not recovered when Flag-dSMN or Flag-dGemin2 were used for the purification pulldowns. Thus it is possible that dGem3 is present in substoichiometric amounts relative to dSMN and dGem2. Despite the relative dearth of biochemical purification data linking these three factors into a single complex, we found that dGem3 is required for Sm core assembly in vitro (Figure 3). Moreover, RNAi knockdown of dGem3 in S2 cells and transposon insertions in the Gemin3 locus in vivo resulted in codepletion of dSMN (Figures 3 and 5). Importantly, overexpression of YFP-Smn in the Gemin3 null mutant background failed to rescue the lethality (Figure 6). Thus, although dGem3 may function to stabilize dSMN, it may have a separate function inside or outside of the SMN complex. Additional experiments will be required to distinguish among these possibilities.
Evidence supporting a role for the WD-repeat protein rigor mortis (rig/dGem5) in SMN complex function comes from phenotypic analyses. rigor mortis is an essential gene, and mutants therein display significant larval lethality; animals that escape the initial wave of larval lethality are developmentally delayed and fail to pupate (Gates et al., 2004
). These phenotypes are strikingly similar to those of the SmnF and Gemin3 alleles described in this work. Thummel and colleagues have shown that rig/dGem5 interacts with several members of the ecdysone signaling pathway required for initiation of puparium formation (Gates et al., 2004
). Mammalian Gemin5 is also involved in signal transduction (Kim et al., 2007
). Similarly, UNRIP/STRAP, another WD repeat protein is an exclusively cytoplasmic member of the SMN complex (Carissimi et al., 2005
; Grimmler et al., 2005
) and is involved in intracellular signaling (Datta et al., 1998
; Datta and Moses, 2000
; Anumanthan et al., 2006
). In the future, it will be interesting to determine whether rigor mortis interacts genetically and physically with other members of the Drosophila SMN complex.
Gemin3, Smn, and Neuromuscular Function
Irrespective of potential roles for the SMN complex in signal transduction, our results demonstrate the essential role that Gemin3 plays in organismal development. During manuscript revision of this article, Mouillet et al. (2008)
showed that the murine ortholog of Gemin3 (Dp103/Ddx20) is essential for early embryonic development in mammals. Loss-of-function mutations in Gemin3 have not been described in other organisms. To date, several Smn and Gemin2 alleles have been characterized. Null mutations in mouse Smn and Gemin2 are also early embryonic lethals (Schrank et al., 1997
; Jablonka et al., 2002
). Expression of a low-copy human SMN2 transgene rescues the embryonic lethality, but the mice die shortly after birth and display severe motor neuron degeneration and muscular atrophy phenotypes (Monani et al., 2000
). Depletion of Smn in zebrafish embryos by morpholino injection elicits defects in motor axon outgrowth, although the primary versus secondary nature of the reported Smn phenotypes is unclear and the results seem to depend on the extent of depletion (McWhorter et al., 2003
; Winkler et al., 2005
; Carrel et al., 2006
; McWhorter et al., 2007). Interestingly, depletion of Gemin2 is reported to have conflicting effects on motor axon development, possibly because of differences in the levels of gene inhibition or in the methods of phenotypic analysis (Winkler et al., 2005
; McWhorter et al., 2007).
The connection between snRNP biogenesis and SMA is certainly complicated and is not well understood. We have shown that mutation of two members of the Drosophila SMN complex, Smn and Gemin3, causes defects in larval motor function. In addition to larval Smn mutants, our laboratory has previously reported SMA-like phenotypes in adult flies containing a hypomorphic SmnE33 mutation (Rajendra et al., 2007
). Thus, although it is clear that perturbations in the SMN complex can indeed result in neuromuscular dysfunction, the contribution that snRNP biogenesis plays in the etiology of these phenotypes remains a subject of ongoing investigation (Shpargel and Matera, 2005
; Wan et al., 2005
; Winkler et al., 2005
; Gabanella et al., 2007
). Further complicating interpretation of the various SMA models is the fact that the SMN complex appears to function in tissue-specific pathways involved in both neuronal (McWhorter et al., 2003
; Zhang et al., 2006
; Bowerman et al., 2007
) and muscular development (Shafey et al., 2005
; Rajendra et al., 2007
). Clearly, animal models will play an important role in future research aimed at distinguishing among the various functions of the SMN complex.
| ACKNOWLEDGMENTS |
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| Footnotes |
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Address correspondence to: A. Gregory Matera (agmatera{at}email.unc.edu)
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