![]() |
|
|
Vol. 20, Issue 12, 2943-2953, June 15, 2009
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||

,


*Department of Biomedical Engineering and
Institute for Mathematics and Its Applications, University of Minnesota, Minneapolis, MN 55455;
Department of Bioengineering, The Pennsylvania State University, University Park, PA 16802; and ||Department of Physics, North Dakota State University, Fargo, ND 58105
Submitted September 5, 2008;
Revised February 23, 2009;
Accepted April 16, 2009
Monitoring Editor: Erika Holzbaur
| ABSTRACT |
|---|
|
|
|---|
| INTRODUCTION |
|---|
|
|
|---|
21 pN-m2,
300 times larger than that of an actin filament (Gittes et al., 1993
Despite their mechanical stiffness, MTs in living cells are often highly buckled, consistent with the model prediction that MTs bear compressive loads (Wang et al., 1993
, 2001
; Ingber et al., 2000
; Stamenovic et al., 2001
; Ingber, 2003
; Brangwynne et al., 2006
). There have been several mechanisms suggested to cause the deformation of MTs. These include MT polymerization against a stationary distal tip (Dogterom and Yurke, 1997
), acto-myosin contractility (Forscher and Smith, 1988
; Waterman-Storer and Salmon, 1997
; Zhou et al., 2002
) and transport (Schaefer et al., 2002
), and buckling of MTs due to direct interactions with molecular motors such as dynein or kinesin (Koonce et al., 1999
; Burakov et al., 2003
; Dujardin et al., 2003
; Malikov et al., 2004
; Baas et al., 2005
, 2006
; Brito et al., 2005
; Ferenz and Wadsworth, 2007
), all of which may act alone or together in the presence of thermal fluctuations.
It is well known that MTs can exert pushing forces during polymerization. During mitosis, for example, it is believed that assembling MTs can exert pushing forces on chromosomes (Dogterom and Yurke, 1997
). It also has been observed in vitro that MTs buckle as they assemble against microfabricated barriers (Dogterom and Yurke, 1997
). In living cells, MTs are known to polymerize against the edge of the cell (Waterman-Storer and Salmon, 1997
), and forces exerted by plus-end MT polymerization have been shown to play a role in positioning of the nucleus in fission yeast (Tran et al., 2001
). Figure 1A is a schematic representation of a microtubule assembling against a stationary obstacle and buckling.
|
Molecular motors linked to the actin cytoskeleton or MTs also can directly exert forces that are resisted by passive cross-links to the actin cytoskeleton. MT-based molecular motors, such as kinesin and dynein can bind to MTs and cause them to buckle upon movement (as shown in Figure 1C1a and 1C2a). Recent evidence also suggests that cytoplasmic dynein is localized to sites of cell–cell contact and that microtubules can become tethered to these dynein patches at the cell cortex, allowing dynein to also act as a passive cross-linker (Gundersen et al., 2004
; Ligon and Holzbaur, 2007
). In addition, it has been argued that cytoplasmic dynein, possibly acting together with motors such as kinesin, plays a crucial role in the maintenance of the centrosome position (Brito et al., 2005
), as well as the organization of MTs into radial arrays in interphase cells (Burakov et al., 2003
; Malikov et al., 2004
). In migrating adherent cells such as fibroblasts, inhibition of dynein stimulates microtubule organizing center reorientation, suggesting that dynein at the cell cortex can exert a pulling force on MTs (Palazzo et al., 2001
). In contrast, experiments in Dictyostelium show that overexpression of dynein induces the formation of loose bundles and results in movement of the entire MT array (Koonce et al., 1999
; Brito et al., 2005
). These results also suggest that the actin-rich cortical mesh serves as a relatively stiff mechanical substrate upon which MT-based motors or linker proteins bind (Brito et al., 2005
). Alternatively, motors such as myosin V can cross-link actin filaments and MTs, and plus- or minus-end–directed motion against a passive cross-link can induce buckling of MTs, as shown in Figure 1C1b and 1C2b.
Interestingly, similar behavior has been observed in gliding assays in vitro in which molecular motors are attached to a rigid glass substrate (Amos and Amos, 1991
; Weiss et al., 1991
). In the gliding assay, a fraction of nonfunctional "dead" motors would serve as passive cross-linkers against which the "active" motors work. Similar to the in vivo observations, MTs are occasionally seen to buckle and rapidly relax when the passive cross-links fail. Despite this resemblance, there has been no quantitative comparison between the bending of MTs in gliding assays and in living cells. Moreover, to the best of our knowledge, a quantitative assessment of the various mechanisms that lead to MT deformation in a given cell type has not been reported in the literature.
Here, we report a systematic analysis of MT deformation in the periphery of living LLC-PK1 cells, and assess the contribution of the different mechanisms discussed above. We also characterize local deformations of MTs in both LLC-PK1 cells and kinesin gliding assays in vitro by using curvature distributions (Bicek et al., 2007
). Our results argue against models in which MTs play a passive structural role and instead favor a model in which active motor forces and cell shape control the spatial distribution of MTs.
| MATERIALS AND METHODS |
|---|
|
|
|---|
(pig kidney epithelial) cells, stably transfected with green fluorescent protein (GFP)-
-tubulin (Rusan et al., 2001
200 cells/mm2) on 35-mm glass-bottomed dishes (MatTek, Ashland, MA) and allowed to spread overnight at 37°C and 5% CO2 in Opti-MEM I (Invitrogen, Carlsbad, CA) supplemented with 10% fetal bovine serum. For F-actin studies, LLC-PK1 cells (American Type Culture Collection, Manassas, VA) were transiently transfected with an enhanced green fluorescent protein (EGFP)-actin plasmid (Clontech, Mountain View, CA) by using FuGENE 6 transfection reagent (Roche, Indianapolis, IN) or a Genepulser II electroporator (set at 0.25 kV, 975 mF; Bio-Rad, Laboratories, Hercules, CA) and incubated for 24–48 h. In addition, a subgroup of stably transfected LLC-PK1
cells was transiently transfected with mCherry-actin (Shaner et al., 2004
Digital Fluorescence Microscopy
Cells were observed on a TE200 inverted microscope (Nikon, Tokyo, Japan) by using a 60x, 1.49 numerical aperture (NA) Plan Apo objective outfitted with a 2.5x projection lens for a total magnification to the camera of 150x. Fluorescent images were collected on a CoolSNAP HQ2 cooled charge-coupled device (CCD) camera (Photometrics, Tucson, AZ), with a resulting image pixel size of
42 nm in the combined camera/microscope system. The camera/microscope system was running under the control of MetaMorph software, version 7.2 (Molecular Devices, Sunnyvale, CA), and the cells were kept at 37°C during imaging. Time sequences were collected with the camera in streaming acquisition mode using an exposure time of 200–400 ms, with a 100-W mercury arc lamp. Images were taken in the periphery of the cell, often within cell protrusions, to ensure that individual MTs could be observed in a single focal plane. This also ensured that bending occurred almost exclusively in the two dimensions that define the focal plane.
Drug Studies
To inhibit myosin II motor activity, and hence F-actin retrograde flow, the cells were treated with 75 µM blebbistatin dissolved in dimethyl sulfoxide (DMSO) (EI-315; BIOMOL Research Laboratories, Plymouth Meeting, PA) (Murthy and Wadsworth, 2005
). We collected images of a cell before the treatment and 15 min after the application of the drug.
To study the effect of polymerization on microtubule deformations, we treated the cells with nocodazole (T-101; BIOMOL Research Laboratories) and used concentrations varying between 10 nM and 50 µM to determine the optimum range to inhibit dynamic instability. The images of a given cell were taken before the treatment and after 15 min of exposure to the drug. Time-lapse images also were recorded at 2-s intervals after the treatment after 15 min.
Fluorescent Speckle Microscopy Kymographic Analysis
Kymographs of MT and F-actin motion were made using the kymograph tool of MetaMorph software, version 7.2 (Molecular Devices). Briefly, a region of interest was selected from a time series that encompassed the area to be analyzed. For F-actin motion, the region (rectangle) was typically 20 pixels (1 pixel = 42 nm in the field) wide by the length of the feature. This was to ensure that intense fluorescent speckles would remain in the region during the time series. The kymograph tool recorded the maximum pixel intensity across every row in the region for each time point in the stack. For kymographs of MT motion, an isolated MT or portion of a MT was selected that developed a bend during the time series. A region of interest was selected around the MT so that the selected MT remained inside the region during the entire time series. Again, the kymograph tool recorded the maximum pixel intensity across every row in the region for each time point in the stack. By using a large region that encompassed an isolated bending MT, the fluorescent speckle pattern recorded in the kymograph resulted in identification of the direction of the applied force. The direction of the applied force provides useful information in screening force models (shown in Figure 1) that cause MT bending.
Kinesins and In Vitro Microtubules
Drosophila melanogaster conventional kinesin heavy chain was bacterially expressed and purified by nickel column chromatography as described previously (Hancock and Howard, 1998
). Two batches of kinesin motors were prepared and used in this study. Bovine brain tubulin (Williams and Lee, 1982
) was purified and rhodamine labeled as described previously (Hyman et al., 1991
) MTs were polymerized by mixing 32 µM rhodamine-labeled tubulin, 4 mM MgCl2, 1 mM guanosine triphosphate, and 5% DMSO in BRB80 buffer [80 mM piperazine-N,N'-bis(2-ethanesulfonic acid), 1 mM EGTA, and 1 mM MgCl2, pH 6.9 with KOH] and incubating at 37°C for 20 min. Polymerized MTs were stabilized with 10 µM paclitaxel.
Kinesin–Microtubule Gliding Assay
Flow cells were constructed by attaching a coverslip to a glass slide with double-stick tape and were incubated with casein solution (0.5 mg/ml casein in BRB80 buffer for 5 min). The flow cell was incubated with 3 µg/ml kinesin. The motors were diluted from stock to the final concentration in solutions containing 1 mM ATP and 0.2 mg/ml casein in BRB80. After 5-min incubation, motility solution containing
32 nM MTs, 1 mM ATP, 10 µM paclitaxel, 0.2 mg/ml casein, 20 mM D-glucose, 0.02 mg/ml glucose oxidase, 0.008 mg/ml catalase, and 0.5% β-mercaptoethanol in BRB80 buffer was introduced into the flow cell. MT movements were observed by fluorescence microscopy using a TE2000 inverted microscope (Nikon) with a 100x 1.3 NA objective. Experiments were conducted at room temperature. Images were captured by a Cascade 512B CCD camera at a frame rate of 0.5 s–1 and saved to a computer.
Semiautomated Tracking Algorithm for Identifying Microtubule Contours
A semiautomated microtubule tracking algorithm was written in MATLAB (The MathWorks, Natick, MA). The algorithm is designed to extract coordinates of a MT within user-defined rectangular regions. MTs often have complex trajectories making it difficult to fit an entire filament by using a single rectangle. We therefore split a given MT into a subset of rectangular regions before estimating the coordinates. A single MT region is specified by two points located at the two opposite corners of a rectangle. Once a region is chosen, the center of mass of the microtubule is calculated by assigning brighter pixels more weight, i.e., Rcm =
i miri/
i mi, where mi and ri correspond to pixel's brightness and position, respectively. The MT is then rotated about its center of mass by integer multiples of 90° to find the closest alignment with the x-axis and so that accurate vertical line-scans can be performed. We use 90° rotations to avoid loss of information due to pixellation upon rotation.
The actual coordinate estimation is done by fitting a Gaussian curve to each vertical line-scan of the region using
|
| (1) |
are determined from the first box corner, and as one progresses through the MT, previous fit values for the line scans are used as initial guesses. The width of the Gaussian fit is constrained to avoid extensive fitting to noise. To do this, the point spread function of the actual microscope setup, i.e., a numerical aperture value of 1.49, wavelength of 513- and 42-nm pixel size, is fitted to a Gaussian, and the SD
PSF is determined. We then restrict
to be in the interval [
PSF, 3
PSF]. The algorithm works on a per-MT region basis, and after all the regions have been analyzed, the program assembles them into a single data file. The regions are connected using linear interpolation to fill in every pixel value, and Gaussian noise of one pixel SD (Bicek et al., 2007
Quantitative Analysis of Microtubule Deformation
We used local estimates of the curvatures along the MT contours to characterize the deformation. The estimation of local curvature and the construction of the curvature distribution were performed as previously described (Bicek et al., 2007
). To reduce the contribution of errors from digitization and data collection procedure (Bicek et al., 2007
), we coarse-grained the MT coordinates obtained using the semiautomated algorithm to an average spacing of 16 pixels. This spacing reduced the contribution of noise to a negligible level, while maintaining the features of the curvature distribution. Adjacent points along the coarse-grained coordinates were used to calculate the curvature using (Figure 2B) the following equation:
|
| (2) |
is the local curvature and
(s) is the tangent angle as a function of the contour length s. For a discrete chain, 
is the angle change between two adjacent points along the chain and
s1 and
s2 are the segment lengths, respectively. This relation provides an approximation of the local curvature for small angle changes and small bond lengths; using equation 2 to calculate the curvature of a circular shaped polymer will underestimate curvature by 1% at moderate curvatures (
= 1(µm)–1) and by 17% at large curvatures (
= 3(µm)–1) at the suggested average spacing of 16 pixels. This error is relatively small compared with the errors due to poor sampling of the distribution at such large curvatures. Regardless of the error introduced by this approximation, comparisons between different experiments can still be made by using this operational definition of curvature. The curvature distribution has been calculated by creating a histogram of the discrete curvature values obtained from equation 2. For the case of a thermally driven semiflexible polymer, the local energy should be distributed exponentially according to Boltzmann's law. Because energy is proportional to the curvature squared, the curvature distribution is Gaussian. The mean of the Gaussian is zero for polymers with zero mean curvature and the variance is inversely proportional to the persistence length (Bicek et al., 2007
|
| RESULTS |
|---|
|
|
|---|
cell stably transfected with GFP-
-tubulin (Rusan et al., 2001Because the MTs in LLC-PK1 cells exhibit dynamic instability in the periphery, we considered whether MT polymerization generates endwise compressive loading on the MT as the growing plus end impinges on the cell margin. Growing MTs could transiently support compressive loads until the plus end undergoes catastrophe and the MT relaxes. However, we noted on occasion that a buckled MT increased its bending during depolymerization (Figure 2C and Supplemental Movie 2C). This observation indicates that an additional force independent of polymerization can act on the MTs.
We also observed that highly bent, depolymerizing MTs rapidly relax once the plus end depolymerized past a specific point in the cell (Figure 2D and Supplemental Movie 2D). These events suggest that the MT is cross-linked to some other static structure, possibly the cortical F-actin network, at specific points along its length. On depolymerizing past these cross-linking points, the attachment is lost and the MT tip region is free to relax and it rapidly straightens out. During relaxation, the velocity of the tip reaches velocities greater than 5 µm/s, suggesting that the MT is indeed stiff (relaxation time of the bend shown in Figure 2D is <0.2 s). This observation also suggests the idea that MT cross-links are important in sustaining MT bending.
Actomyosin Contractility
Because actomyosin contractility has been reported to buckle and break MTs (Waterman-Storer and Salmon, 1997
; Gupton et al., 2002
; Brangwynne et al., 2006
), we directly imaged actin dynamics to determine its contribution to MT bending in LLC-PK1 cells. As shown in Figure 3A (and Supplemental Movies 3A1 and 3A2), we found that F-actin is nearly stationary, whereas MTs are simultaneously observed to deform. This time series indicates that microtubules are bending and buckling without attendant actin-based motion. In addition, we performed a kymographic analysis of mCherry-actin transfected LLC-PK1 cells. Figure 3C shows a kymograph from the cell shown in Figure 3B (and Supplemental Movie 3B) with an actin retrograde flow velocity of 6.9 ± 0.6 nm/s (n = 4 cells) to be on the time scales of seconds which compares well with the values reported by Gupton et al. (2002)
. To further test the role of actomyosin contractility, we inhibited myosin II ATPase activity with blebbistatin. Figure 4 shows a cell before and after treatment (t
15 min) with blebbistatin. MTs are highly bent in both cases, providing further evidence that actomyosin contractility does not play a major role in forming these deformations. We conclude that, at least for LLC-PK1 cells adhered to a glass substrate, F-actin–based retrograde flow is too slow to drive the fast MT bending and unbending dynamics observed experimentally.
|
|
β-tubulin heterodimeric subunits to the tip of a growing MT generates enough force to buckle MTs in vitro (Dogterom and Yurke, 1997
|
15 min) treatment in 50 µM nocodazole. At such a high concentration of the drug, aside from a few MTs near the cell center, most of the MTs depolymerized. The remaining MTs near the center still exhibited dynamic bending events. In the cells that are treated with 100 nM nocodazole (Figure 6B), MTs were observed to have nondynamic tips or they occasionally went through rapid depolymerization. As shown in Figure 6B, the MT deformations that are observed are qualitatively similar before and after the drug treatment. Once again, we observed dynamic bending events after the drug treatment that resulted in anterograde transport. A montage from a nondynamic buckled microtubule being transported anterogradely after nocodazole treatment is shown in Figure 7A (see also Supplemental Movie 7). As the kymograph in Figure 7B shows, the speckles along the microtubule move anterogradely toward a stationary distal tip (t = 12 s and t = 60 s).
|
|
|
|
If MT bending is driven by thermal forces (or by forces that are effectively thermal), then the distribution of curvatures should be Gaussian (Bicek et al., 2007
). We found, as shown in Figure 10, that the in vivo curvature distribution has the characteristics of an exponential (and can be approximated with a biexponential function; data not shown), rather than the Gaussian distribution expected of a thermally driven polymer (shown with dashed line in Figure 10). The observed distribution is not an artifact of the image collection and analysis method, since we have validated our approach against a computational model of thermally fluctuating semiflexible polymers (Bicek et al., 2007
). In our previous work (Bicek et al., 2007
), we applied the model-convolution technique (Sprague et al., 2003
, 2004
; Bicek et al., 2007
; Gardner et al., 2007
) to the simulated MTs, thereby reproducing the effects of the point-spread function of the microscope and noise from the digital image acquisition process inherent in our microscope/camera system. We then showed that the observation of a thermally driven polymer via our experimental apparatus (accounting for the observed blur, digitization, and noise levels) and image analysis method will indeed result in the observation of a Gaussian curvature distribution if the data are collected at the proper spacing between coordinates (Bicek et al., 2007
).
|
We also considered the effects of a length-dependent flexural rigidity, as recently suggested from in vitro studies (Pampaloni et al., 2006
; Taute et al., 2008
). If the MTs in our data set were composed of two populations, each with a different flexural rigidity, and driven only by thermal forces, the resulting curvature distribution would be the sum of two Gaussians. Such a distribution has a concave downward form in the tail, and will not able to explain the exponential tail shown in Figure 10. We therefore conclude that length-dependent changes in EI do not play a significant role in LLC-PK1 cells.
To compare with a much simpler model system, we measured the curvature distribution of the MTs in gliding assays in vitro, and we found essentially quantitative agreement between the in vitro and in vivo MT curvature distributions, as shown in Figure 10. Such agreement further supports a model where MT-based motor forces are the major driver of bending in LLC-PK1 epithelial cells.
| DISCUSSION |
|---|
|
|
|---|
Analysis of Microtubule and F-Actin Motion
Previous work has demonstrated close correlation between the retrograde flow of F-actin and the buckling of MTs (Waterman-Storer and Salmon, 1997
; Gupton et al., 2002
). In addition, MTs are clearly observed to bend as they polymerize against the edge of the cell or a microfabricated barrier (Dogterom and Yurke, 1997
; Waterman-Storer and Salmon, 1997
). In the present study, the kymographic analysis of speckled F-actin features and MTs (Figures 3C and 5B) provides a direct method to determine the site of application and direction of active intracellular forces. Both F-actin retrograde flow and MT polymerization forces result in compressive loading of the MT. These forces act by pushing the distal segment of the MT retrogradely against a stationary, or at least a slower moving, proximal segment of the MT. In either case, the distal MT tip and its associated fluorescent speckles move retrogradely. This feature is diagnostic when screening for the origin of forces that produce MT motion, such that any force that originates within the cell interior and pushes the proximal portion of the MT outward anterogradely cannot be the result of either MT polymerization at the distal plus end or F-actin retrograde flow. Anterograde MT motion originating from within the cell body that pushes the proximal MT segments forward, while the distal segments remain stationary contradicts both the F-actin retrograde flow and MT polymerization models for MT bending in LLC-PK1 cells. Instead, our findings rather imply that the anterograde speckle movement of the proximal MT segment against a stationary distal MT segment is motor based and that the MTs are transported anterogradely against passive cross-links that hold the distal segment stationary. Our results are also consistent with earlier studies of neuronal growth cones (Schaefer et al., 2002
) in which microtubules were observed to buckle during anterograde transport.
Evidence for Microtubule-based Motor-driven Buckling
The quantitative similarity between curvature distributions in the in vitro MT gliding assays and the in vivo data are remarkable. This is interesting because in this simple in vitro system, in which only thermally fluctuating, nongrowing MTs and MT-based motors are present, the curvature distribution observed in a living cell is recapitulated. The non-Gaussian nature of the resulting curvature distribution indicates the presence of active forces of nonthermal origin, such as those caused by molecular motors. These results suggest that the cell is regulating the MT array via active force generators, consistent with previous observations (Koonce et al., 1999
; Burakov et al., 2003
; Malikov et al., 2004
; Brito et al., 2005
).
For active forces to deform MTs in the gliding assay, we speculate that some dead motors act as passive cross-linkers and resist the forces generated by functional motors, resulting in MT bending. Alternatively, the motors attached to the MT could act at slightly different rates, resulting in instabilities that are "grabbed" by other nearby motors, which may further amplify the curvature. Because in vitro motor preparations invariably have some fraction of dead motors in them, we favor the former explanation, but further work will be required to distinguish between these two possibilities.
Interestingly, because both living cells and gliding assays show evidence of highly curved MTs rapidly relaxing upon loss of attachment sites, similar mechanisms may be involved. This suggests that in living cells, the MT-based motors can act as both passive cross-links that resist transport and active force generators, an emerging theme in the molecular motor field (Tao et al., 2006
; Saunders et al., 2007
). Alternatively, there may be a second set of molecules that passively cross-link, most likely to the stationary F-actin cytoskeleton, such as ACF7 (Chishti et al., 1998
; Kodama et al., 2003
). The anterograde movement of the MTs suggests that the motor that drives bending is either dynein or a minus-end–directed kinesin.
Microtubule-based Mechanotransduction
The results presented here argue against a major cell-level passive structural function for interphase MTs in LLC-PK1 epithelial cells in which MTs act as compressive struts that resist actomyosin contractility. Instead, our results lead us to favor a role where mechanical forces act to control the spatial distribution of MTs in living cells. In this model, MTs are pushed and pulled around the cell mainly by MT-based motor forces (Figure 11), although other forces discussed above are also likely to contribute to varying degrees, perhaps more dominantly in other cells types or phases of the cell cycle. Our results also argue that forces are not only generated near the tips of the MTs but also in the middle regions of the cell, suggesting that the MT based motors, such as dynein, anchored at the actin rich cortex may act on MTs and deform them, as shown in Figure 11. Some of these forces can be accommodated by the repositioning or the deformation of the centrosome. Alternatively, the forces may exceed a threshold for detachment from the centrosome and lead to MT release (Keating et al., 1997
; Piehl et al., 2004
). If a MT becomes highly curved due to motor or other forces acting upon it, it is more likely to break or depolymerize (Waterman-Storer and Salmon, 1997
), which, over time, would reorganize the MT array in a force-dependent manner (Odde et al., 1999
). However, MT breaking may not be a widespread phenomenon, because we have rarely observed MT breaking in LLC-PK1 cells, even though the magnitude of the observed curvatures was similar to that in cells where breaking has been observed (Odde et al., 1999
). Mechanically based regulation of the MT array raises the possibility that the MT array could act as a mechanosensory apparatus. Similar to motor-based forces, externally applied mechanical loads could result in changes to the MT distribution. Because MTs act as "railroad tracks" for the transport of intracellular cargo, and because they are also capable of providing signals at their tips via plus-end tracking proteins, a mechanical reorganization of the MT array could cause cellular cargo or plus-end–associated signaling molecules to be redirected to another cellular location. This process could lead to a mechanotransduction event and cause a mechanical force to result in a cellular response via the MT cytoskeleton.
|
| ACKNOWLEDGMENTS |
|---|
cell line and Dr. Roger Y. Tsien (University of California, San Diego, La Jolla, CA) for the mCherry-actin. E. T. acknowledges support from the Institute for Mathematics and Its Applications post-doctoral fellowship, D.M.K. acknowledges support from the National Science Foundation (grant DMR-0513393) and D.J.O. acknowledges support from the National Science Foundation (grant MCB-0615568). | Footnotes |
|---|
These authors equally contributed to this work. ![]()
Address correspondence to: David J. Odde (oddex002{at}umn.edu)
Abbreviations used: MT, microtubule.
| REFERENCES |
|---|
|
|
|---|
Baas, P. W., Karabay, A., and Qiang, L. (2005). Microtubules cut and run. Trends Cell Biol 15, 518–524.[CrossRef][Medline]
Baas, P. W., Nadar, Vidya, C., and Myers, K. A. (2006). Axonal transport of microtubules: the long and short of it. Traffic 7, 490–498.[CrossRef][Medline]
Bicek, A. D., Tüzel, E., Kroll, D. M., and Odde, D. J. (2007). Analysis of microtubule curvature. Methods Cell Biol 83, 237–268.[CrossRef][Medline]
Brangwynne, C. P., MacKintosh, F. C., Kumar, S., Giesse, N. A., Talbot, J., Mahadevan, L., Parker, K. P., Ingber, D. E., and Weitz, D. A. (2006). Microtubules can bear enhanced compressive loads in living cells because of lateral reinforcement. J. Cell. Biol 173, 733–741.
Brito, D. A., Strauss, J., Magidson, V., Tikhonenko, I., Khodjakov, A., and Koonce, M. P. (2005). Pushing forces drive the comet-like motility of microtubule arrays in Dictyostelium. Mol. Biol. Cell 16, 3334–3340.
Burakov, A., Nadezhdina, E., Slepchenko, B., and Rodionov, V. (2003). Centrosome positioning in interphase cells. J. Cell. Biol 162, 963–969.
Buxbaum, R. E., and Heidemann, S. R. (1988). A thermodynamic model for force integration and microtubule assembly during axonal elongation. J. Theor. Biol 134, 379–390.[CrossRef][Medline]
Chishti, A. H. et al. (1998). The FERM domain: a unique module involved in the linkage of cytoplasmic proteins to the membrane. Trends Biochem. Sci 23, 281–282.[CrossRef][Medline]
Dogterom, M., and Yurke, B. (1997). Measurement of the force-velocity relation for growing microtubules. Science 278, 856–860.
Dujardin, D. L., Barnhart, L. E., Stehman, S. A., Gomes, E. R., Gundersen, G. G., and Vallee, R. B. (2003). A role for cytoplasmic dynein and LIS1 in directed cell movement. J. Cell. Biol 163, 1205–1211.
Ferenz, N. P., and Wadsworth, P. (2007). Prophase microtubule arrays undergo Flux-like behavior in mammalian cells. Mol. Biol. Cell 18, 3993–4002.
Forscher, P., and Smith, S. J. (1988). Actions of cytochalasins on the organization of actin filaments and microtubules in a neuronal growth cone. J. Cell Biol 107, 1505–1516.
Gardner, M. K., Odde, D. J., and Bloom, K. (2007). Hypothesis testing via integrated computer modeling and digital fluorescence microscopy. Methods 41, 232–237.[CrossRef][Medline]
Gittes, F., Mickey, B., Nettleton, J., and Howard, J. (1993). Flexural rigidity of microtubules and actin filaments measured from thermal fluctuations in shape. J. Cell. Biol 120, 923–934.
Gundersen, G. G., Gomes, E. R., and Wen, Y. (2004). Cortical control of microtubule stability and polarization. Curr. Opin. Cell Biol 16, 106–112.[CrossRef][Medline]
Gupton, S. L., Salmon, W. C., and Waterman-Storer, C. M. (2002). Converging populations of F-actin promote breakage of associated microtubules to spatially regulate microtubule turnover in migrating cells. Curr. Biol 12, 1891–1899.[CrossRef][Medline]
Hancock, W. O., and Howard, J. (1998). Processivity of the motor protein kinesin requires two heads. J. Cell. Biol 140, 1395–1405.
Howard, J. (2001). Mechanics of Motor Proteins and the Cytoskeleton, Sunderland, MA: Sinauer Associates.
Hyman, A., Drechsel, D., Kellogg, D., Salser, S., Sawin, K., Steffen, P., Wordeman, L., and Mitchison, T. (1991). Preparation of modified tubulins. Methods Enzymol 196, 478–485.[Medline]
Ingber, D. E. (1993). Cellular tensegrity: defining new rules of biological design that govern the cytoskeleton. J. Cell Sci 104, 613–627.[Medline]
Ingber, D. E. (2003). Tensegrity I. Cell structure and hierarchical systems biology. J. Cell Sci 116, 1157–1173.
Ingber, D. E., Heidemann, S. R., Lamoureux, P., and Buxbaum, R. E. (2000). Opposing views on tensegrity as a structural framework for understanding cell mechanics. J. Appl. Physiol 89, 1663–1678.
Janson, M. E., and Dogterom, M. (2004). A bending mode analysis for growing microtubules: evidence for a velocity-dependent rigidity. Biophys. J 87, 2723–2736.[CrossRef][Medline]
Janson, M. E., Dood, De, M. E., and Dogterom, M. (2003). Dynamic instability of microtubules is regulated by force. J. Cell. Biol 161, 1029–1034.
Keating, T. J., Peloquin, J. G., Rodionov, V. I., Momcilovic, D., and Borisy, G. G. (1997). Microtubule release from the centrosome. Proc. Natl. Acad. Sci. USA 94, 5078–5083.
Kodama, A., Karakesisoglou, I., Wong, E., Vaezi, A., and Fuchs, E. (2003). ACF7 An essential integrator of microtubule dynamics. Cell 115, 343–354.[CrossRef][Medline]
Koonce, M. P., Köhler, J., Neujahr, R., Schwartz, J.-M., Tikhonenko, I., and Gerisch, G. (1999). Dynein motor regulation stabilizes interphase microtubule arrays and determines centrosome position. EMBO J 18, 6786–6792.[CrossRef][Medline]
Ligon, L. A., and Holzbaur, E.L.F. (2007). Centrosome fragments and microtubules are transported asymmetrically away from division plane in anaphase. Traffic 8, 808–819.[CrossRef][Medline]
Malikov, V., Kashina, A., and Rodionov, V. (2004). Cytoplasmic dynein nucleates microtubules to organize them into radial arrays in vivo. Mol. Biol. Cell 15, 2742–2749.
Murthy, K., and Wadsworth, P. (2005). Myosin-II-dependent localization and dynamics of F-Actin during cytokinesis. Curr. Biol 15, 724–731.[CrossRef][Medline]
Odde, D. J., Ma, L., Briggs, H., DeMarco, A., and Kirschner, M. W. (1999). Microtubule bending and breaking in living fibroblast cells. J. Cell Sci 112, 3283–3288.[Abstract]
Palazzo, A. F., Joseph, H. L., Chen, Y.-J., Dujardin, D. L., Alberts, A. S., Pfister, K. K., Vallee, R. B., and Gundersen, G. G. (2001). Cdc42, dynein, and dynactin regulate MTOC reorientation independent of Rho-regulated microtubule stabilization. Curr. Biol 11, 1536–1541.[CrossRef][Medline]
Pampaloni, F., Lattanzi, G., Jonas, A., Surrey, T., Frey, E., and Florin, E.-L. (2006). Thermal fluctuations of grafted microtubules provide evidence of a length-dependent persistence length. Proc. Natl. Acad. Sci. USA 103, 10248–10253.
Piehl, M., Tulu, U. S., Wadsworth, P., and Cassimeris, L. (2004). Centrosome maturation: measurement of microtubule nucleation throughout the cell cycle by using GFP-tagged EB1. Proc. Natl. Acad. Sci. USA 101, 1584–1588.
Rusan, N. M., Fagerstrom, C. J., Yvon, A. M., and Wadsworth, P. (2001). Cell cycle dependent changes in microtubule dynamics in living cells expressing green fluorescent protein-alpha tubulin. Mol. Biol. Cell 12, 971–980.
Salmon, W. C., Adams, M. C., and Waterman-Storer, C. M. (2002). Dual-wavelength fluorescent speckle microscopy reveals coupling of microtubule and actin movements in migrating cells. J. Cell. Biol 158, 31–37.
Saunders, A. M., Powers, J., Strome, S., and Saxton, W. M. (2007). Kinesin-5 acts as a brake in anaphase spindle elongation. Curr. Biol 17, R453–R454.[CrossRef][Medline]
Schaefer, A. W., Kabir, N., and Forscher, P. (2002). Filopodia and actin arcs guide the assembly and transport of two populations of microtubules with unique dynamic parameters in neuronal growth cones. J. Cell. Biol 158, 139–152.
Shaner, N. C., Campbell, R. E., Steinbach, P. A., Giepmans, B.N.G., Palmer, A. E., and Tsien, R. Y. (2004). Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat. Biotechnol 22, 1567–1572.[CrossRef][Medline]
Sprague, B. L., Pearson, C. G., Maddox, P. S., Bloom, K. S., Salmon, E. D., and Odde, D. J. (2003). Mechanisms of microtubule-based kinetochore positioning in the yeast metaphase spindle. Biophys. J 84, 3529–3546.[Medline]
Sprague, B. L., Gardner, M. K., Pearson, C. G., Maddox, P. S., Bloom, K., Salmon, E. D., and Odde, D. J. (2004). Model-convolution approach to modeling fluorescent protein dynamics. signals, systems and computers. In: Conference Record of the Thirty-Eighth Asilomar Conference, 2, 1821–1825.
Stamenovic, D., Mijailovich, S. M., Tolic-Norrelykke, I. M., Chen, J., and Wang, N. (2001). Cell prestress. II. Contribution of microtubules. Am. J. Physiol. Cell Physiol 282, C617–C624.
Tao, L., Mogilner, A., Civelekoglu-Scholey, G., Wollman, R., Evans, J., Stahlberg, H., and Scholey, J. M. (2006). A homotetrameric Kinesin-5, KLP61F, bundles microtubules and antagonizes Ncd in motility assays. Curr. Biol 16, 2293–2302.[CrossRef][Medline]
Taute, K. M., Pampaloni, F., Frey, E., and Florin, E.-L. (2008). Microtubule dynamics depart from the wormlike chain model. Phys. Rev. Lett 100, 028102.
Tran, P. T., Marsh, L., Doye, V., Inoue, S., and Chang, F. (2001). A mechanism for nuclear positioning in fission yeast based on microtubule pushing. J. Cell. Biol 153, 397–411.
VanBuren, V., Cassimeris, L., and Odde, D. J. (2005). Mechanochemical model of microtubule structure and self-assembly kinetics. Biophys. J 89, 2911–2926.[CrossRef][Medline]
Wang, N., Butler, J. P., and Ingber, D. E. (1993). Mechanotransduction across the cell surface and through the cytoskeleton. Science 260, 1124–1127.
Wang, N., Naruse, K., Stamenovic, D., Fredberg, J. J., Mijailovich, S. M., Tolic-Norrelykke, I. M., Polte, T., Mannix, R., and Ingber, D. E. (2001). Mechanical behavior in living cells consistent with the tensegrity model. Proc. Natl. Acad. Sci. USA 98, 7765–7770.
Waterman-Storer, C. M., and Salmon, E. D. (1997). Actomyosin-based retrograde flow of microtubules in the lamella of migrating epithelial cells influences microtubule dynamic instability and turnover and is associated with microtubule breakage and treadmilling. J. Cell. Biol 139, 417–434.
Weiss, D. G., Langford, G. M., Seitz-Tutter, D., and Maile, W. (1991). Analysis of the gliding, fishtailing and circling motions of native microtubules. Acta Histochem. Suppl 41, 81–105.[Medline]
Williams, R. C., Jr., and Lee, J. C. (1982). Preparation of tubulin from brain. Methods Enzymol 85, 376–385.[CrossRef][Medline]
Zhou, F. Q., Waterman-Storer, C. M., and Cohan, C. S. (2002). Focal loss of actin bundles causes microtubule redistribution and growth cone turning. J. Cell. Biol 157, 839–849.
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||