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Vol. 20, Issue 14, 3305-3316, July 15, 2009
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*Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215;
Department of Systems Biology, Harvard Medical School, Boston, MA 02115; and
Massachusetts General Hospital and Harvard Medical School, Charlestown, MA 02129
Submitted January 30, 2009;
Revised April 21, 2009;
Accepted May 18, 2009
Monitoring Editor: Mark J. Solomon
| ABSTRACT |
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| INTRODUCTION |
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In response to DNA damage signals, cells will arrest either in the G1 phase to prevent the replication of the damaged DNA or arrest in the G2 phase to prevent cells from segregating defective chromosomes (Weinert, 1998
). It is widely assumed that activation of the ATM/ATR/Chk kinase pathway is the initial response to damaged DNA, resulting in the phosphorylation and stabilization of p53. The p53 tumor suppressor protein is considered the major effector of DNA damage signals, eliciting a cellular response by activating either a G1 or G2 arrest through its transcriptional targets p21 or Gadd45a (Lakin and Jackson, 1999
; Meek, 1999
). The p21 protein is an universal Cdk inhibitor, and many reports have demonstrated that the p53/p21 pathway is required for establishing G1 arrest after genotoxic stress (Waldman et al., 1995
). On the other hand, it is known that cyclin, the regulatory subunit of various Cdk complexes, is extremely unstable and that destruction of cyclin by either the APC or SCF complexes is considered an efficient way to inhibit Cdk activity, thereby facilitating cell cycle arrest. It is noteworthy that APC/Cdh1 activity can be activated by DNA damage signals, resulting in enhanced degradation of its substrates including cyclin B, cyclin D (Agami and Bernards, 2000
), Cdc25A (Donzelli et al., 2002
), and Securin (Romero et al., 2001
). Thus, Cdh1 activity may also play an important role in mediating cell cycle arrest after DNA damage signals. In support of this assertion, Cdh1–/– chick DT40 cells failed to arrest in either the G1 or G2 phase after DNA damage (Sudo et al., 2001
). Furthermore, it was demonstrated recently that loss of Cdh1 in both human and mouse fibroblasts leads to accumulation of DNA damage signals (Engelbert et al., 2008
; Garci-Higuera et al., 2008
). However, the exact mechanism by which Cdh1 participates in the DNA damage repair process is still unknown. Using affinity purification coupled with mass spectrometry, we found that Claspin associates with Cdh1. In agreement with a recent report (Bassermann et al., 2008
), we further demonstrated that Claspin is a novel substrate for Cdh1. Claspin is a positive regulator of Chk1 activity and is a key player in the DNA damage repair pathway (Sar et al., 2004
). Thus our finding provides a bridge for further understanding the function of Cdh1 in the DNA-damage repair pathway.
We previously showed that Rb specifically interacts with Cdh1 and thereby influences its ability to degrade its substrate Skp2 (Binne et al., 2007
). Here, we continue to demonstrate that by specifically interacting with the hypophosphorylated (active) form of Rb, Cdh1 can regulate the activity of the E2F1 transcription factor (Sorensen et al., 2000
). As a result, in normal human fibroblasts, depletion of Cdh1 resulted in premature senescence, whereas inactivation of both the p53 and Rb pathways by overexpressing SV40 LT-antigen partially reversed this phenotype. Interestingly, inactivation of other major tumor suppressors including PTEN (Chen et al., 2005
) and VHL (Young et al., 2008
) is also reported to induce premature senescence. The ability of normal cells to establish premature senescence in response to various stresses, including DNA damage (Robles and Adami, 1998
), oxidative stress (Chen et al., 1998
), and expression of active oncogenic proteins (Bartkova et al., 2006
; Koutsami et al., 2006
; Mallette et al., 2007
) has been proposed as a built-in fail-safe mechanism against cancer development (Campisi and d'Adda di Fagagna, 2007
). In agreement with this model, our finding that normal human fibroblasts undergo premature senescence after acute loss of Cdh1 provides the possible underlying molecular mechanism for the less frequently observed Cdh1 loss in tumor cells and further implies that loss of Cdh1 occurs late in tumor development.
| MATERIALS AND METHODS |
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Antibodies and Reagents
Anti-Chk1 antibody (SC-8408), anti-p21 antibody (sc-397), anti c-Myc antibody (sc-40), anti-p53 antibody (sc-126), anti-p27 antibody (SC-528), polyclonal anti- HA antibody (SC-805), anti-cyclin A antibody (SC-751), anti-cyclin B antibody (SC-245), anti-Cdc20 antibody (SC-8358), anti-Plk1 antibody (SC-17783), anti-cyclin E antibody (SC-247), and anti-Ets-2 antibody (SC-22803) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-tubulin antibody (T-5168), polyclonal anti-FLAG antibody (F2425), monoclonal anti-FLAG antibody (F-3165), anti-vinculin antibody (V4505), peroxidase-conjugated anti-mouse secondary antibody (A4416), and peroxidase-conjugated anti-rabbit secondary antibody (A4914) were purchased from Sigma (St. Louis, MO). Monoclonal anti-HA antibody (MMS-101P) was purchased from Covance (Madison, WI). Anti-GFP antibody (632380) and monoclonal anti-Skp2 antibody (32-3400) was purchased from Invitrogen (Carlsbad, CA). Monoclonal anti-Cdh1 (CC43) antibody was purchased from Calbiochem (San Diego, CA). Anti-Claspin antibody (A267A) was purchased from Bethyl Labs (Montgomery, TX). Anti-pSer317-Chk1 antibody (2344), anti-pSer15-p53 antibody (9284), anti-pSer20-p53 antibody (9287), and anti-pSer807pSer811-Rb antibody (9308) were purchased from Cell Signaling (Beverly, MA). Anti-E2F1 antibody (05-379) was purchased from Upstate Biotechnology (Lake Placid, NY). Anti-p16INK4a antibody was purchased from BD Pharmingen (San Diego, CA).
Small Interfering RNAs
Human small interfering RNA (siRNA) oligos which can deplete both β-Trcp1 and β-Trcp2 (sense, 5'-AAGUGGAAUUUGUG GAACAUC-3') have been validated previously (Jin et al., 2003
) and were purchased from Dharmacon (Boulder, CO). Human siRNA oligos against Fbw7, Skp2, and Cdh1 have been described previously (Wei et al., 2004
, 2005
). A luciferase GL2 siRNA oligo was purchased from Dharmacon. As described previously, siRNA oligos were transfected into subconfluent cells using Oligofectamine or Lipofectamine 2000 (Invitrogen) according to the manufacturer's instructions (Wei et al., 2004
, 2005
).
Cell culture and Cell Synchronization
Cell culture, including synchronization and transfection, has been described (Wei et al., 2004
). Retrovirus packaging and subsequent infection of various cell lines were performed according to the protocol described previously (Wei et al., 2003
). Lentiviral shRNA virus packaging and subsequent infection of various cell lines were performed according to the protocol described previously (Boehm et al., 2005
).
Immunoblots and Immunoprecipitation
Cells were lysed in EBC (50 mM Tris, pH 7.5, 120 mM NaCl, and 0.5% NP-40) buffer supplemented with protease inhibitors (Complete Mini, Roche) and phosphatase inhibitors (phosphatase inhibitor cocktail set I and II, Calbiochem). The protein concentrations of the lysates were measured using the Bio-Rad protein assay reagent on a Beckman Coulter DU-800 spectrophotometer (Fullerton, CA). The lysates were then resolved by SDS-PAGE and immunoblotted with indicated antibodies. For immunoprecipitation, 800 µg lysates were incubated with the appropriate antibody (1–2 µg) for 3–4 h at 4°C followed by a 1-h incubation with protein A Sepharose beads (GE Healthcare, Waukesha, WI). Immunocomplexes were washed five times with NETN buffer (20 mM Tris, pH 8.0, 100 mM NaCl, 1 mM EDTA, and 0.5% NP-40) before being resolved by SDS-PAGE and immunoblotted with indicated antibodies.
Rb Binding Assays
Binding to immobilized GST proteins was performed as described before (Wei et al., 2004
).
Protein Degradation and In Vitro Ubiquitination Analysis
Cells were transfected with a plasmid encoding a Myc-tagged version of Claspin along with HA-Cdh1 or HA-Cdc20, and a plasmid encoding GFP as a negative control. Forty hours after transfection, cells were lysed and protein abundances were measured by immunoblot analysis. In vitro ubiquitination assay was performed as described previously (Wei et al., 2004
).
Bromodeoxyuridine Labeling and Senescence-associated β-Galactosidase Staining
Bromodeoxyuridine (BrdU) labeling and senescence-associated β-galactosidase (β-Gal) staining were performed using the protocol described previously (Wei et al., 2001
). Experiments were repeated twice to generate error bars.
Fly Work
A null mutation for Fzr (fzrie28) was obtained from C. Lehner (University of Bayreuth, Bayreuth, Germany) (Jacobs et al., 2002
). Mitotic clones were induced using the flippase recombination enzyme/flippase recognition target (FLP/FRT) technique (Xu and Rubin, 1993
). Therefore, the mutant allele was recombined with an FRT-chromosome (FRT19A) to generate fzrie28, FRT19A, and ey-FLP was used to induce the clones in the eye. Immunostaining of eye imaginal disks was performed as previously described (Moon et al., 2006
), using antibodies against green fluorescent protein (GFP; rabbit polyclonal, 1:2000, Invitrogen), Cyclin B (mouse monoclonal, 1:100, Developmental Studies Hybridoma Bank) and dE2F1 (guinea pig polyclonal, 1:200, a gift from T. Orr-Weaver, Whitehead Institute for Biomedical Research, Cambridge, MA).
| RESULTS |
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300–320 and
320–340 (Supplemental Figure S2C). We found that the
320–340 mutant Claspin became stabilized in early G1 phase. This might be due to reduced ubiquitination by Cdh1 because after deletion of the degron sequence, the resulting mutant cannot be efficiently ubiquitinated by Cdh1 in vitro (Supplemental Figure S2D). After careful examination of the protein sequence in this region, we found that two motifs, LLK and KYQ, that were conserved across different species (Figure 3E). Further studies clearly showed that mutation or deletion of the KYQ motif did not affect the stability of Claspin (data not shown), whereas deletion of the LLK motif created a Claspin mutant that could not be degraded at the early G1 phase (Figure 3D). Furthermore, we found that deletion of the LLK motif also abolished its interaction with Cdh1 (Supplemental Figure S2E). Although it is distinct from all known Cdh1 degron motifs, it seems to be derived from a hybrid of the O-box and KEN box.
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In contrast to our observations in HeLa cells, we found that depletion of Cdh1 with lenti-viral shRNA vectors resulted in retarded growth in U2OS cells, which possess relatively normal p53 pathway, but defective Rb pathway due to loss of p16 expression (Stott et al., 1998
; Supplemental Figure S4, B and E). A similar growth retardation phenotype is observed in mouse embryonic fibroblasts when Cdh1 is depleted (Garci-Higuera et al., 2008
; Li et al., 2008
). We further found that normal human fibroblasts (Wei et al., 2003
) responded more severely to acute loss of Cdh1, undergoing the premature senescence program as evidenced by elevated β-Gal staining (Figure 5A) and ceased cell proliferation (Supplemental Figure S4F). This observation was supported by FACS analysis, which showed that the S-phase cell populations were significantly decreased after depletion of Cdh1 (Figure 5B). Additionally, we found that after Cdh1 depletion, there was almost no BrdU incorporation even after 6-h incubation, whereas more than 60% of the control cells were BrdU positive (Figure 5, C and D). In agreement with the growth arrest phenotype, we found that many senescence-associated molecular markers, including p21, p27, and to a lesser degree p16, were also induced after acute loss of Cdh1 in primary human fibroblasts (Figure 5E). p21 is a well-characterized p53 downstream target; thus, the significant induction of p21 provides further support for the notion that loss of Cdh1 activates the p53 pathway. On the other hand, consistent with a recent report (Li et al., 2008
), we found that elevated Ets-2 expression might contribute to the moderate increase in p16 expression (Figure 5E).
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Inactivation of the p53 and Rb Pathways by Overexpressing SV40-LT Antigen Partially Bypassed Cdh1 Depletion–induced Premature Senescence in Primary Human Fibroblasts
To investigate the underlying molecular mechanisms for Cdh1 depletion–induced premature senescence, we generated LT-antigen expressing LF1 and foreskin human fibroblasts (FF1) human fibroblasts (Supplemental Figure S5, A and B). We found a dramatic induction of p53 (Borger and DeCaprio, 2006
) and E2F1 (Nemethova et al., 2004
) abundance after overexpressing LT-ag, and more importantly, the expression levels of most of the examined E2F1 targets including Cdh1, Chk1, Rb, Plk1, cyclin A, and Skp2 were induced as well (Supplemental Figure S5, A and B). In contrast to the dramatic decrease in S phase cells after Cdh1 depletion in normal LF1 cells (Figure 5B), the S phase population of LF1/LT cells did not decrease after depletion of Cdh1 (Figure 6A). In addition, compared with the total loss of BrdU incorporation in LF1 cells after depleting Cdh1 (Figure 5, C and D), there was only a 1.5- to 2-fold decrease in the percentage of BrdU-positive cells after depletion of Cdh1 in LF1/LT cells (Figure 6, C and D). These results indicated that the growth arrest phenotype was abolished after inactivation of the p53 and Rb pathways. Consistent with this finding, we found that loss of Cdh1 in LF1/LT did not significantly induce the staining of senescence-associated β-Gal (Figure 6B). In addition, we found that the induction of many senescence-associated markers including p21 and p27 in response to Cdh1 loss is largely reduced after overexpression of SV40 LT-antigen (Figure 5E), which might contribute to the bypass of the growth-arrest phenotype induced by acute Cdh1 loss. Moreover, we found that overexpression of SV40 LT-antigen in foreskin human fibroblast cells also partially rescued the onset of premature senescence induced by Cdh1 loss (Supplemental Figure S6).
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C-box Cdh1 mutant, which has lost the ability to interact with Rb, also failed to induce E2F1 expression in U2OS cells (Supplemental Figure S8C). Additionally, in agreement with a previous report (Marti et al., 1999
APC/Cdh1 and Rb/E2F1 pathway functions are highly conserved between mammalian cells and the fruit fly Drosophila melanogaster. To investigate a possible role for Cdh1 loss on Rb/E2F1 pathway activity, we took advantage of Drosophila eye imaginal disks as a model system for the in vivo study of cell cycle regulation. During the third instar larval stage of Drosophila development, a wave of differentiation, controlled by the concerted action of a variety of signaling pathways, moves from the posterior toward the anterior end of the eye disk (Brennan and Moses, 2000
). The edge of this wave is apparent as an indentation in the disk and is referred to as morphogenetic furrow (MF). Cells anterior to the MF divide asynchronously, whereas cells within the MF get synchronized in the G1 phase of the cell cycle. They go through one additional cell division immediately posterior to the MF, before they finally exit the cell cycle and differentiate. Homozygous mutant clones for Fizzy related (Fzr), the fly orthologue of Cdh1, were induced in eye imaginal disks using an FLP transgene under the control of an eye-specific promoter, ey-FLP, and identified by the absence of GFP signal. As expected, immunostaining using an antibody to Cyclin B, a known degradation target of APC/Cdh1, revealed elevated Cyclin B levels in fzr mutant clones compared with surrounding wild-type tissue (Supplemental Figure S10, A and B). However, Drosophila E2F1 (dE2F1) levels were markedly down-regulated in fzr mutant clones (Supplemental Figure S10, C and D). The most dramatic decrease in dE2F1 levels was observed in G1 phase cells within the MF, whereas cells posterior to the MF, which have exited the cell cycle, showed only a modest reduction in dE2F1 staining. However, dE2F1 protein decreased to similar overall levels in both regions of the eye disk upon inactivation of Fzr, suggesting that the observed differences in dE2F1 down-regulation are a result of the higher basal dE2F1 levels in the MF compared with the posterior part of the disk. Taken together, these data suggest that Cdh1/Fzr affects the activity of the Rb/E2F1 pathway in vivo in Drosophila.
| DISCUSSION |
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We combined immunoprecipitation with mass spectrometry to identify Cdh1-interacting proteins. As shown in Figure 1C, we were able to pulldown known Cdh1 substrates, indicating that we developed a novel method for identifying potential Cdh1 substrates. Claspin was found to be a novel Cdh1 interactor, and further biochemical analysis confirmed that Claspin is indeed a novel Cdh1 substrate. Claspin is a well-known upstream activator of Chk1 (Kumagai et al., 2004
; Wang et al., 2006
). After DNA damage or replication stress, phosphorylation of Claspin by ATR promotes its interaction with Chk1, which subsequently promotes Chk1 activation by ATR (Yoo et al., 2006
). Therefore, our results suggest that Cdh1 could modulate Chk1 activity by regulating Claspin stability. Further studies revealed that Cdh1 degrades Claspin mainly in the early G1 phase (Figure 3). Chk1 was reported to phosphorylate p53 at the Ser20 site (Shieh et al., 2000
); we found that phosphorylation of the Ser20 site of p53 is moderately increased in Cdh1-depleted U2OS cells (Figure 4A). Loss of Cdh1 has been reported to create a DNA damage-like response (Engelbert et al., 2008
; Garci-Higuera et al., 2008
). Because loss of Cdh1 led to enhanced Claspin abundance, it is reasonable to assume that elevated Claspin levels will eventually activate the Chk1/p53 pathway to create the DNA damage-like response (Figure 4D), although further studies are required to pinpoint whether increased p53 activity is a cause or consequence of accumulated DNA damage-like signals. Alternatively, because loss of Cdh1 results in up-regulation of its downstream targets, many of which including Skp2, Plk1, and Aurora Kinase A have strong oncogenic activity, this could potentially result in activation of DNA damage checkpoints, which is currently considered as a protection mechanism for cells in response to abnormal oncogenic stress (Serrano et al., 1997
; Mallette et al., 2007
).
When Ha-Ras is overexpressed in normal human fibroblasts, instead of enhancing cell proliferation, it results in acute growth arrest, a phenotype called premature senescence (Serrano et al., 1997
). Furthermore, it has been shown that inactivation of both the p53 and Rb pathways are required to bypass Ha-Ras–induced growth arrest. Therefore, it has been proposed that functionally intact p53 and Rb pathways are natural barriers to inhibit the cellular transformation process, which is typically linked with abnormal induction of one or multiple oncogenes (Lundberg et al., 2000
). Interestingly, we found that depletion of Cdh1 in HeLa cells, which have defective p53 and Rb pathways, led to early S phase entry and enhanced BrdU labeling (Figure 4C). On the other hand, depletion of Cdh1 in both primary lung fibroblasts and primary foreskin fibroblasts led to premature senescence (Figure 5 and Supplemental Figure S6). In support of our findings, inactivation of Cdh1 in MEFs led to premature senescence as well (Li et al., 2008
). Inactivation of other major tumor suppressors including PTEN and VHL was also reported to cause a growth arrest phenotype and the p53 or Rb pathways were found to be critical for the phenotype, respectively (Chen et al., 2005
; Young et al., 2008
). We found that inactivation of Cdh1 led to a marked decrease in E2F1 abundance in both lung fibroblasts and foreskin fibroblasts. This result indicated that in addition to affecting the Claspin/Chk1/p53 pathway, Cdh1 could modulate Rb/E2F1 activity as well.
We previously demonstrated that Rb could physically interact with many subunits of the APC core complex as well as Cdh1 (Binne et al., 2007
). Here, we continued to show that similar to E2F1, Cdh1 only interacts with the hypophosphorylated (active) form of Rb, and phosphorylation of Rb by cyclin A/Cdk2 kinase abolished the ability of Rb to interact with both Cdh1 (Figure 7D) and E2F1 (Supplemental Figure S7C). Because both E2F1 and Cdh1 bind to the hypophosphorylated form of Rb in a similar manner, we found that they might compete with each other for Rb interaction (Figure 7, E and F). Therefore, it is plausible that in the late G1 phase, the free Cdh1 population is greatly enhanced after its dissociation from the APC core subunit, which might promote E2F1 release by competing for Rb interaction. As a result, we found that when Cdh1 is overproduced in U2OS cells, there is increased E2F1 abundance (Figure 7B). On the other hand, when Cdh1 is depleted, Rb will interact with E2F1 more strongly, which leads to repression of E2F1 activity (Figure 7A).
The finding that loss of Cdh1 in normal human fibroblasts leads to activation of both the p53 and Rb pathways and that the growth arrest phenotype can be overcome only after inactivation of both pathways (Figure 6 and Supplemental Figure S6) implies that loss of Cdh1 is not beneficial to cells with functional p53/Rb pathways. On one hand, it helps to explain why loss of Cdh1 is observed at a very low frequency in various tumors. On the other hand, it also indicates that in cells with defective Rb/p53 pathways, such as HeLa cells, depletion of Cdh1 leads to enhanced S phase entry and a proliferative advantage. Thus, the additional loss of Cdh1 in tumors with defective p53/Rb pathways is likely to promote tumorigenesis. In this case, loss of Cdh1 might be a relatively late event during the multistep tumorigenic process, which occurs after the disruption of the p53/Rb tumor suppressor pathways.
| ACKNOWLEDGMENTS |
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| Footnotes |
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Address correspondence to: Wenyi Wei (wwei2{at}bidmc.harvard.edu)
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