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Vol. 20, Issue 6, 1816-1832, March 15, 2009
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Department of Cell Biology, University of Virginia, Charlottesville, VA 22908; and
Department of Physiology, Nihon University School of Dentistry at Matsudo, Matsudo 271-8587, Japan
Submitted September 2, 2008;
Revised January 7, 2009;
Accepted January 12, 2009
Monitoring Editor: Sandra Lemmon
| ABSTRACT |
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| INTRODUCTION |
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Along with the ESCRT complexes, an array of additional proteins is known to contribute to regulating sorting and degradation. Ubiquitin ligases, such as Nedd4 and Tal, have been implicated in ubiquitylating Hrs and Tsg101, respectively, to negatively regulate their ability to bind ubiquitylated cargo (Polo et al., 2002
; Amit et al., 2004
). Besides the RING finger ubiquitin ligase Cbl, HECT ubiquitin ligases of the Nedd4 family are known to ubiquitylate and down-regulate receptors and channels (e.g., ENaC and CXCR4; Henry et al., 2003
; Marchese et al., 2003
). Two deubiquitylating enzymes, UBPY and AMSH, have also been implicated in receptor degradation, although currently, their distinct roles in receptor recycling and/or ubiquitin salvage before degradation are still unclear (McCullough et al., 2004
; Mizuno et al., 2005
; Bowers et al., 2006
; Row et al., 2006
; Alwan and van Leeuwen, 2007
). ESCRT-III also recruits the AAA-ATPase VPS4 and associated proteins that enable ESCRT disassociation, disassembly from clathrin patches, and intraluminal vesicle formation (Sachse et al., 2004
; Stuchell-Brereton et al., 2007
). Also the sorting nexin, SNX3, and annexin I have emerged as proteins with complementary roles to ESCRTs in facilitating cargo sorting and formation of ILVs (White et al., 2006
; Strochlic et al., 2007
; Pons et al., 2008
).
Within the large spectrum of processes involved in endosomal sorting and down-regulation, most functional insights have featured proteins (e.g., ESCRTs, Rabs, and Rab effectors) that are peripheral components of endosomal membranes, associating mainly through lipid-binding domains (reviewed in Maxfield and McGraw, 2004
; Hurley and Emr, 2006
; Williams and Urbe, 2007
). Information regarding how transmembrane proteins that are not cargoes might contribute to these processes is more limited, although endosomal acidification and turnover of selected cargoes are known to involve transmembrane machinery (Harvey et al., 2002
; Hettema et al., 2004
; Maxfield and McGraw, 2004
; Shearwin-Whyatt et al., 2004
). We have been interested in the possibility that secretory carrier membrane proteins, SCAMPs, might contribute to sorting events in endosomes. SCAMPs are tetraspanning, integral membrane proteins that reside in the cell surface recycling system including the trans-Golgi network, early sorting and recycling endosomes, and plasma membrane (Castle and Castle, 2005
). In mammalian tissues, the SCAMP family includes four ubiquitous isoforms, SCAMPs 1-4, and a predominantly neuronal isoform SCAMP5 (Fernandez-Chacon and Sudhof, 2000
; Hubbard et al., 2000
). SCAMP function is presumably conserved through the transmembrane core but is modulated by focal differences in amino acid sequences of the N- and C-termini. This may contribute to subtle differences in localization and more importantly may enable individual SCAMP isoforms to function analogously in distinct membranes and bring unique interactions to complex processes such as regulated exocytosis (Castle and Castle, 2005
; Liao et al., 2008
).
In the present study, we have focused on SCAMP3 and provide evidence that it acts as a regulator of EGFR trafficking within endosomal membranes. Whereas our previous studies have hinted at a potential functional association of SCAMP3 and EGFR (Wu and Castle, 1998
), we now show that this SCAMP is an important determinant of EGFR sorting and rate of receptor degradation. Interestingly, regulation appears to involve ubiquitylation of SCAMP3, its interactions with the ESCRT machinery, and a distinct function in MVB formation or maturation. Other SCAMPs, in particular SCAMP1 and 2, do not appear to participate in these processes.
| MATERIALS AND METHODS |
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and 1
, SCAMP2
Ab, and SCAMP3β have been characterized previously (Singleton et al., 1997
-adaptin antibodies (BD Biosciences, San Jose, CA); myc mAb 9E10 hybridoma cells were obtained from J. Thorner (University of California, Berkeley); green fluorescent protein (GFP) mAb (Santa Cruz Biotechnology, Santa Cruz, CA); HA mAb (Covance, Richmond, CA); Hrs and Vps24 polyclonal antibodies were gifts of H. Stenmark (Norwegian Radium Hospital, Norway); Tsg101 mAb (Genetex, San Antonio, TX); and CHMP6 polyclonal antibody was a gift of W. Sundquist (University of Utah). The EGFR mAb 13A9 used for immunostaining and gold conjugation was obtained from Genentech (San Francisco, CA) and has been described previously (Burke et al., 2001Protein A Sepharose, N-ethylmaleimide (NEM), protein kinase A, and human holotransferrin (Sigma); glutathione Sepharose and Sephadex G-50 (Amersham Pharmacia Biotech AB, Uppsala, Sweden); HRP-conjugated secondary antibodies (Jackson ImmunoResearch Laboratory, West Grove, PA); Super Signal West Pico ECL Reagent (ThermoScientific, Rockford, IL); Immobilon Western ECL Reagent (Millipore, Billerica, MA); Alexa 488-EGF, Alexa fluor secondary antibodies, and mouse EGF (Invitrogen, Carlsbad, CA); streptavidin agarose and Sulfo-NHS-LC-biotin (Pierce-Endogen, Rockford, IL); cØmplete Roche Protease Inhibitor Cocktail Tablets (Roche, Mannheim, Germany).
Expression Constructs
Glutathione S-transferase (GST) fusion proteins of SCAMP3 N-terminus wild type, Y53A, and L61A were made by PCR amplification from bait clones used in yeast two-hybrid studies (see below) and ligation into pGEX-2TK. Other mutants, P51G, P137A, and L138A, were generated using QuikChange site-directed mutagenesis (Stratagene, La Jolla, CA) to the wild-type SC3 N-terminus in pGEX-2TK. Truncations of the SCAMP3 N-terminus, SC3-NPF (residues 1-89) and SC3-LL (residues 90-164), were created by PCR amplification and ligation into pGEX-2TK. Fusion proteins of GST with fragments of wild-type SCAMP3 (61-73) and its mutant P67L were generated by ligation of the corresponding wild-type or mutant oligonucleotide to human SCAMP3 into BamHI/EcoRI sites in pGEX vector. The SCAMP3 (61-80)–ubiquitin/pGEX chimera was generated by oligonucleotide ligation of the SCAMP3 fragment with BamHI/HindIII sites and PCR amplification of ubiquitin with HindIII/NotI sites. Mouse SCAMP3 mutants Y53A, S67A, and DM (Y53A and S67A), KR6 (K76, 103, 104, 147, 225, and 315R), and W219A were generated using QuikChange site-directed mutagenesis or PCR amplification using nested primers and ligation into pcDNA 3.1.
Other constructs were generous gifts from the following: pEGFP-2xFYVEHrs, H. Stenmark; pKU-HA-Hrs; H. Asao (Tokuku University School of Medicine, Japan); myc-Hrs, myc-Hrs
UIM, myc-Hrs
VHS/FYVE, myc-Hrs
VHS, myc-Hrs
clathrin-binding domain (
CBD) in pcDNA3, M. von Zastrow (University of California, San Francisco) with permission of H. Stenmark; FLAG-Nedd4-2-pcDNA 3.1, Nedd4-pCXN2, mouse Nedd4 WW1-3 and mutant WW1-3 and mouse Nedd4-2 WW1-4 and mutants in pGEX2TK, S. Kumar (Hanson Institute, Adelaide, South Australia); Rab5Q79L in pGreen Lantern, J. Casanova (University of Virginia); UEV domain Tsg101(1-145) in pET 11d, W. Sundquist; HA-Ub-pMT 123, D. Bohmann (University of Rochester, New York); and pEF-HA-Ub KR4, Y. Yarden (Weizmann Institute, Rehovot, Israel).
Two-Hybrid Assay
Bait clones of SCAMP3 N-terminus (aa 1-145) were all constructed in pGBT9 (Clontech, Mountain View, VA) and transformed into yeast strain AH109 (Gietz and Woods, 2002b
), whereas prey clones from a 17-d-old mouse embryo cDNA library (Clontech, Mountain View, CA) were constructed in pVP16 (Hollenberg et al., 1995
) and transformed into yeast strain Y187. Selection was performed on -leu, -trp, -his, -ade plates according to standard protocols (Gietz and Woods, 2002a
).
Small Interfering RNAs
All SCAMP siRNAs were made against human isoforms and obtained from Dharmacon (Lafayette, CO) or Invitrogen. Sense sequences for small interfering RNAs (siRNAs) were as follows: for SCAMP3, (1) 5'-CAGCTACTCGACAGAACAA-3' and (2) 5'-AACGGATCCACTCCTTATA-3'; for SCAMP1, 5'-TCATCTCACTAGTTAATGTT-3'; for SCAMP2, 5'-CACTGTAGCCAACTTGCAT-3'. siRNA sequences for Hrs, Tsg101, and Vps24 have been described previously (Bache et al., 2003b
, 2006
; Razi and Futter, 2006
). For controls, a nonspecific siRNA no. 2 (Invitrogen) or a scrambled siRNA to SCAMP3 siRNA-1 (5'-GAAGCGGCGUAAUGACCAAdTdT-3') was used.
Cell Culture and Transfections
HeLa and HEK-293T cells were grown in DMEM (Invitrogen), supplemented with 10% fetal bovine serum and antibiotics. DNA plasmids were transfected with Lipofectamine 2000 or Lipofectamine PLUS Reagent (Invitrogen) according to manufacturer's directions. For siRNA transfections using Oligofectamine (Invitrogen), 75 nM siRNA was used to transfect HeLa cells. For siRNA transfections using Lipofectamine RNAiMax (Invitrogen), HeLa cells were transfected on sequential days with 8.3 nM siRNA for each transfection. Cells were analyzed 48 h after the second transfection.
GST Pulldowns and Coimmunoprecipitation Assays
For GST pulldowns, 20–25 µg of fusion protein conjugated to glutathione Sepharose was used. For each pulldown 100 µl of postnuclear supernatant prepared from rat parotid gland was diluted with 2x TGE (20 mM Tris-HCl, 300 mM K-glutamate, 2 mM EDTA, pH 7.5) with protease inhibitors, and Triton X-100 was added to 0.5%. Pulldowns were incubated overnight at 4°C and then washed three times with TGE and 0.5% Triton X-100. For immunoprecipitations to detect ubiquitylated SCAMP3 and interactions with Nedd4 and Nedd4-2, HEK-293T cells were lysed in RIPA buffer (1% Triton X-100, 1% sodium deoxycholate [DOC], 10 mM Tris, 150 mM NaCl, protease inhibitors, pH 7.4) on ice for 20 min. To the lysate, 0.1% SDS was added before incubation with protein A-Sepharose and 2 µg SCAMP3β antibody or 10 µg rabbit IgG for 1 h at RT or overnight at 4°C. IPs were washed three times with wash buffer (1% Triton X-100, 150 mM NaCl, 50 mM HEPES, 5 mM EDTA, 0.05% SDS, protease inhibitors, pH 7.4) and one time with PBS. For immunoprecipitations with Hrs and EGFP-2xFYVEHrs, HEK-293T cells were lysed in Triton lysis buffer (1% Triton X-100, 10 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, pH 7.4) containing protease inhibitors and with or without 10 mM NEM and then incubated with antibody overnight at 4°C. Protein A-Sepharose was added the next day for 0.5–2 h. The immunoprecipitations were washed three times with lysis buffer and one time with PBS. All pulldowns and immunoprecipitations were resuspended in Laemmli buffer with 4% SDS and 50 mM DTT, boiled, and run on SDS-PAGE.
Far Western Analysis of SCAMP3 N-Terminus Interaction with Nedd4 WW Domains
Purified WW domains of mouse Nedd4 and Nedd4-2 were labeled with [
-32P]ATP using protein kinase A according to the manufacturer's instructions. The reaction was quenched with 25 mm HEPES, pH 7.4, 12.5 mM MgCl2, 20% wt/vol glycerol, 100 mM KCl, 1 mg/ml BSA, and 1 mM DTT and fractionated on a 3-ml Sephadex G-50 column. One microgram of GST or fusion proteins was run on SDS-PAGE and transferred to nitrocellulose or stained with Coomassie Blue. The nitrocellulose was blocked with 5% milk in Hyb-75 (20 mM HEPES, pH 7.7, 75 mM KCl, 0.1 mM EDTA, 2.5 mM MgCl2, 0.05% NP-40, 1 mM DTT) for 4 h and then incubated in 5.0 x 105 cpm/ml radiolabeled WW domains and 30 µg unlabeled GST in 1% milk in Hyb-75 overnight at 4°C. The membranes were washed three times with 1% milk in Hyb-75 and two times in Hyb-75, dried, and exposed to a phosphoimager.
Binding Analysis by Surface Plasmon Resonance
All experiments were performed at 25°C. Purification of the UEV domain and immobilization of GST antibody onto a research grade CM5 chip were done as previously described (Garrus et al., 2001
). Bacterial lysates expressing GST proteins were diluted ten times in HBS-EP (0.01 M HEPES, pH 7.4, 0.15 M NaCl, 3 mM EDTA, 0.005% vol/vol Surfactant P20) + 1 mg/ml BSA and captured on antibody surfaces to densities of 1–1.5 kilo response units. UEV domain (25 µl) was injected in triplicate at a flow rate of 50 µl/min. Binding-specific responses were obtained by subtracting responses in the absence of GST protein from responses in the presences of GST protein. The equilibrium dissociation constants were obtained from 1:1 interaction binding isotherms using Biaevaluation (Biacore AB, Uppsala, Sweden) and Origin 6.1 (OriginLab Corp., Northampton, MA) (Myszka, 1999
).
Immunofluorescence Microscopy and Quantitation
Immunofluorescent labeling was performed according to standard procedures (Liu et al., 2002
). For staining of Hrs, cells were permeabilized briefly (2 min) with 0.05% saponin, 80 mM K-PIPES, 5 mM EGTA, and 1 mM MgCl2, pH 6.8, before fixation as described in Simonsen et al. (1998a)
. Images were captured using either a Zeiss Axiovert 100 wide-field microscope (63x oil objective, 1.4 NA; Thornwood, NY) or a Nikon TE2000E confocal microscope (100x oil objective, 1.45 NA, Melville, NY). For quantitation of the fluorescent signal, Z-stack images (0.25 µm) were captured using a 63x oil objective and deconvolved using volume deconvolution, and the fluorescent intensity was measured using Openlab software (Improvision, Lexington, MA). More than 25 cells were analyzed for each sample to obtain average fluorescence intensity per cell. The Student's t test was used to determine statistical significance between control and experimental samples.
EGF internalization was measured in HeLa cells that were starved 1–2 h in DMEM and 0.1% BSA, labeled on ice for 1 h with 100 ng/ml Alexa 488-EGF, chased for various times in the presence of 100 ng/ml unlabeled EGF, washed, and processed for immunofluorescence microscopy. To visualize internalized EGFR, cells were labeled with 1 µg/ml EGFR mAb 13A9 for 1 h on ice, washed, stimulated with 100 ng/ml EGF at 37°C, chilled quickly, and stripped with 200 mM glycine and 150 mM NaCl, pH 2.5 on ice for 5 min. The cells were then processed for immunofluorescence microscopy. To quantitate recycled EGFR, cells were labeled with 1 µg/ml EGFR mAb 13A9 for 1 h on ice, washed, and then stimulated with 100 ng/ml EGF for 2 h. Cells were then fixed and labeled with an anti-mouse Alexa 594 secondary antibody to detect cell surface–bound EGFR before permeabilization and labeling with SCAMP3β antibody and anti-rabbit Alexa 488 secondary antibody. Cells were scored for the presence or absence of surface-associated fluorescent EGFR signal compared with nontransfected cells.
125I-EGF and 125I-TfR Degradation, Recycling, and Uptake Assays
Mouse EGF and human holotransferrin were iodinated using IODO-GEN Precoated Iodination Tubes (Pierce) according to manufacturer's instructions. All incubations were performed at 37°C. Cells were incubated with DMEM and 0.1% BSA containing 0.5–1 µCi/ml 125I-EGF or 125I-TfR for 1–2 h or 30 min, respectively. The cells were washed and chased in DMEM and 0.1% BSA for indicated times. An excess of unlabeled EGF was added to the chase media for EGF assays. For TfR, the cells were stripped briefly with 50 mM glycine, 100 mM NaCl, and 1 mg/ml PVP, pH 3.0, before incubation with chase medium. At each time point, the medium was removed and replaced with fresh medium. After incubation, cells were lysed in 1 M NaOH and 0.1–1% Triton X-100. For EGF assays, the chase media were precipitated with 5% trichloroacetic acid (TCA)/1% phosphotungstic acid (PTA) to separate degraded (TCA/PTA soluble) from recycled (TCA/PTA insoluble) material (Sorkin et al., 1988
). For TfR assays, all the 125I-Tf in the medium was considered recycled. All values were normalized to the total 125I-EGF or 125I-Tf present in media and cells. To measure uptake of EGF, cells were incubated in the presence of 0.5–1 µCi/ml 125I-EGF on ice for 45 min, washed to remove unbound ligand, and chased at 37°C for indicated times. Cells were rapidly chilled, the medium was removed, and cells were acid stripped with 0.2 M acetic acid and 0.5 M NaCl (pH 3.0) and lysed. 125I-EGF in the lysates was considered internalized, and the values were normalized to total 125I-EGF in the acid strip medium and lysate.
EGFR and TfR Degradation Assays
To monitor EGFR degradation, cells were starved 1–2 h in DMEM, 0.1% BSA, stimulated with 100 ng/ml EGF for specified times, and lysed on ice in Triton lysis buffer with protease inhibitors. Cleared lysates were subjected to SDS-PAGE and immunoblotting. Chemiluminescent signal was detected using a FujiFilm LAS-3000 imager (FujiFilm Life Sciences, Stamford, CT) and analyzed with MultiGauge 3.0 (FujiFilm Life Sciences). Protein levels were normalized using an antibody to a
-adaptin or other nonaffected protein. To measure TfR degradation, HeLa cells were starved 2 h in DMEM, 0.1% BSA and then chilled on ice for 5 min. The cell surface was labeled with 0.5 mg/ml Sulfo-NHS-LC-biotin at 4°C, washed, and incubated with complete media for 0–48 h at 37°C. Cells were scraped and lysed in Triton lysis buffer with protease inhibitors. The lysates were incubated with streptavidin-agarose for 1–2 h at room temperature, washed, and subjected to SDS-PAGE. Undegraded, biotinylated TfR remaining at each time point was detected by enhanced chemiluminescence (ECL) using an antibody to TfR and quantitated as the fraction of total biotinylated TfR present initially.
Electron Microscopy
EGFR mAb 13A9 antibody was conjugated to 10-nm colloidal gold (Ted Pella, Redding, CA), harvested, and washed by centrifugation using a previously described procedure (Slot and Geuze, 1981
). EGF-stimulated uptake of the colloidal gold conjugate was documented by immunofluorescence microscopy (data not shown). HeLa cells, transfected with nonspecific control siRNA or SCAMP3 siRNA-2, were serum starved 1 h in DMEM, 0.1% BSA. The cells were then chilled on ice, labeled 1 h with 13A9-gold antibody, washed, and stimulated at 37°C with 100 ng/ml EGF for 30 or 60 min. At the end of the incubation, the samples were washed briefly with prewarmed PBS and fixed 45 min at room temperature by addition of warmed 2.5% glutaraldehyde, 0.1 M cacodylate, pH 7.5. After fixation, the samples were washed in 5% sucrose, 0.1 M cacodylate, postfixed 45 min in 0.5% OsO4, 0.1 M cacodylate containing 0.1% potassium ferrocyanide, washed in 0.1 M NaCl, and stained 40min in 0.5% uranyl acetate, and 0.1 M acetate, pH 6.1. Cells were scraped from the culture dishes, embedded in 1.75% LMP-agarose, dehydrated, and embedded according to standard procedures. Sections were examined unstained and photographed at 12,000x using a Jeol 1230 TEM microscope equipped with a digital camera (Tokyo, Japan). Grids were systematically scanned, and all gold visualized was photographed until at least 30 images per experiment of each sample, including >1500 µm2 cytoplasm over three separate experiments, had been obtained. EGFR-gold was evaluated for location (MVB, late endosome/lysosome, or tubule/vesicle/other), and when possible, the number of ILVs was manually counted and the area of EGFR-labeled MVBs and cytoplasm was calculated using the measurements module in ImageJ (http://rsb.info.nih.gov/ij/).
| RESULTS |
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SCAMP3 Ubiquitylation.
Because SCAMP3 can interact with Nedd4 ubiquitin ligases, we were curious whether SCAMP3 could itself be ubiquitylated. To evaluate this possibility, we transfected cells with hemagglutinin (HA)-tagged ubiquitin, immunoprecipitated SCAMP3, and analyzed the presence of ubiquitin by Western blotting of HA. We observed a discrete ladder of bands,
7–9 kDa apart, extending upwards from
43 kDa (
7 kDa above the bulk of SCAMP3 antigen, Figure 1E), consistent with attachment of multiple ubiquitin moeities to the SCAMP. We also analyzed the ability of SCAMP1 and 2, which do not contain a PY motif, to be ubiquitylated. SCAMP1 appears to be ubiquitylated to a small degree, whereas ubiquitylation of SCAMP2 was not detected (Figure 1E). Thus, ubiquitylation is selective for SCAMP3.
Previous studies have shown that receptors undergoing down-regulation are derivatized at multiple sites by monoubiquitin (multimonoubiquitylation) although addition of ubiquitin polymers (polyubiquitylation) has been reported as well and may facilitate sorting for degradation (Hicke, 2001
; Huang et al., 2006
; Barriere et al., 2007
; Umebayashi et al., 2008
). Furthermore, the ubiquitin adaptors Eps15 and epsin as well as members of the ESCRT complexes are themselves regulated by multimonoubiquitylation (Mosesson and Yarden, 2006
). To determine if the ubiquitylated SCAMP3 species reflect multimonoubiquitylation or polyubiquitylation, we used an ubiquitin mutant (KR4) in which four of its major lysines were mutated to arginine (K11, 29, 48, and 63R), thus suppressing polyubiquitylation (Amit et al., 2004
). We observed identical banding patterns for immunoprecipitations from cells expressing wild-type or KR4 ubiquitin, indicating that SCAMP3 is most likely multimonoubiquitylated (Figure 1F).
Interaction with Tsg101.
P(S/T)AP motifs have been shown to bind the UEV domain of Tsg101 in a region that is distinct from the ubiquitin-binding site (Pornillos et al., 2002
). We used surface plasmon resonance to evaluate the potential for the PSAP motif of SCAMP3 to associate with the UEV domain of Tsg101. A GST fusion protein containing a small peptide from SCAMP3, which includes the PSAP motif, was able to bind the UEV domain of Tsg101 with significant, albeit low affinity (Figure 2). In contrast, a peptide containing a mutation in the PSAP motif (P67L) did not detectably bind to the UEV domain. Previous studies have shown that covalent attachment of ubiquitin to P(S/T)AP-containing peptides enhances binding synergistically due to the proximity of the P(S/T)AP motif and ubiquitin-binding sites (Garrus et al., 2001
). Because SCAMP3 can be ubiquitylated, we hypothesized that ubiquitylated SCAMP3 may bind the UEV domain more efficiently. We generated a SCAMP3 peptide–ubiquitin chimera by substituting a single ubiquitin in place of a naturally occurring lysine in the SCAMP3 (Figure 2). When we tested its affinity, we saw a 20-fold increase in binding to the UEV domain (Figure 2), comparable to that observed for another ubiquitin chimera (Garrus et al., 2001
). We attempted to coimmunoprecipitate the Tsg101-SCAMP3 complex in cell lysates using overexpression of Tsg101 and/or SCAMP3 but were not successful. This may be a reflection of the low binding affinity of even the SCAMP3–ubiquitin chimera, suggesting that the interaction is weak and perhaps transient or may involve only a small fraction of the SCAMP3 and Tsg101.
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SCAMP3 Localizes to Early Endosomes That Traffic EGFR
SCAMP3 has been shown to colocalize with endocytosed TfR in early sorting endosomes (Castle and Castle, 2005
). Also, electrostatic associations with polyanionic phospholipids, especially phosphoinositides, have been implicated as a conserved property of SCAMPs (Ellena et al., 2004
; Liao et al., 2007
). Consequently, we sought to determine if SCAMP3 localized to sorting portions of early endosomes, which are known to be enriched in phosphatidylinositol-3-phosphate (PI3P). For this purpose we transfected cells with constitutively active GFP-Rab5 (Rab5Q79L), GFP-2xFYVEHrs, or myc-Hrs, each of which causes early endosomes to enlarge and accumulate PI3P (Stenmark et al., 1994
; Komada et al., 1997
; Gillooly et al., 2000
). We observed localization of endogenous SCAMP3 in enlarged endosomes in Rab5Q79L- and 2xFYVEHrs-expressing cells, but SCAMP3 was unevenly concentrated along and protruding from the more evenly stained profiles of the two GFP constructs (Figure 4, A and B). Expressed SCAMP3 also localized with enlarged endosomes of Hrs expressing cells (Figure 4C).
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As a complementary approach to analyzing the effect of overexpression of SCAMP3 and select mutants on EGFR recycling, we examined the recycling versus degradation of 125I-EGF. As shown in Figure 10, overexpression of SCAMP3 decreased degradation and increased recycling as compared with cells transfected with vector alone. Quite interestingly, overexpression of the DM mutant slightly enhanced degradation and decreased recycling as compared with vector-transfected cells. The effect of this mutant resembles the effect of SCAMP3 knockdown and suggests that the mutant acts in a dominant-inhibitory manner. In a separate set of analyses, overexpression of mutant KR6 decreased recycling as compared with wild-type SCAMP3, but the effect was not as strong as for the mutant DM (data not shown). In these experiments, the levels of overexpression of mutants KR6 and DM were about one-third and the same as wild-type SCAMP3, respectively. Taken together, these results of the EGFR and 125I-EGF recycling assays provide strong support that SCAMP3 interaction with ESCRT machinery and its ubiquitylation promote EGFR recycling.
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1.5–4.5-fold increase, indicating that degradation was inhibited (Figure 11D). When we tested the effect of paired knockdowns with SCAMP3, there was, in most cases, an increase in fluorescence compared with control,
0.8–1.75-fold; however, it was less than for knockdowns of individual ESCRT subunits alone but greater than for knockdown of SCAMP3 alone (Figure 11E). Except in the case of Tsg101, these results do not appear to be a consequence of defects in internalization (Supplemental Figure S6) and support the possibility that SCAMP3 function may coincide with and complement ESCRT function.
Knockdown of SCAMP3 Perturbs EGFR-containing MVBs
To search for changes in endosomal morphology accompanying SCAMP3 knockdown more quantitatively and at higher resolution, we examined compartments containing internalized EGFR by immunoelectron microscopy. HeLa cells were labeled with EGFR mAb 13A9-gold, stimulated with EGF, and processed for observation at 30 and 60 min. Three separate experiments resulted in very similar outcomes. We found that gold-labeled MVBs from SCAMP3-depleted cells and control cells were similar in size and morphology (Figure 12, Table 1). Also, the number of internal vesicles/µm2 MVB cross-sectional area was about the same, indicating that ILV formation is not affected (Table 1). Together, these results indicated that depletion of SCAMP3 did not detectably affect the structure of individual MVBs. However we found an interesting difference in the density (number/µm2 cytoplasm) of EGFR-labeled MVBs between SCAMP3 knockdown and control cells. Although both types of cells exhibited the same density at 30 min after initiating uptake, this density decreased by one-third in control cells but was unchanged at 60 min in knockdown cells. Notably, the density of gold-labeled late endosomes/lysosomes was essentially the same in both types of cells at 30 and 60 min (Table 2). Therefore it appears that depletion of SCAMP3 does not affect the kinetics of trafficking to lysosomes but rather the number of gold-labeled MVBs enroute to the lysosome. When we examined the EGFR-gold containing MVBs from both control and SCAMP3-depleted cells more closely, we often found small buds or tubules extending from and occasionally into them, suggesting that these MVBs are actively sorting cargo and have not fully matured (Figure 12, B, D, F, and G; Woodman and Futter, 2008
). We also examined the sections for the presence of EGFR-labeled tubulovesicular compartments, which may represent an intermediate for recycling cargo between MVBs and the ERC or TGN. We were able to identify some compartments that appeared tubulovesicular in morphology (data not shown); however, we were not able to sufficiently resolve these compartments to quantify them. Occasionally we also found gold residing on the plasma membrane and on extracellular material. Nevertheless, these results suggest that depletion of SCAMP3 affects trafficking of EGFR upstream of degradation in the lysosome, possibly during maturation or formation of MVBs (see Discussion).
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| DISCUSSION |
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Ubiquitylation of SCAMP3 and its interactions with ESCRTs are reminiscent of several adaptors that function in endosomal sorting. In particular, Ndfip1/2 and the yeast adaptors Bsd2, Ear1p, and Ssh4p are all membrane proteins that contain PY motifs and are ubiquitylated by Nedd4/Rsp5p (Harvey et al., 2002
; Konstas et al., 2002
; Hettema et al., 2004
; Shearwin-Whyatt et al., 2004
; Oberst et al., 2007
; Leon et al., 2008
). Additionally, Nedd4 ubiquitylates GGA3 to promote transport of the membrane protein LAPTM5 to lysosomes (Pak et al., 2006
). The PSAP motif of Hrs recruits Tsg101 to facilitate cargo transfer from ESCRT-0 to ESCRT-I (Garrus et al., 2001
; Katzmann et al., 2003
; Pornillos et al., 2003
; Yanagida-Ishizaki et al., 2008
), and similar to SCAMP3, PY and PSAP motifs on the membrane protein SIMPLE/LITAF bind Nedd4 and Tsg101, probably to support lysosomal sorting from the Golgi and plasma membrane (Shirk et al., 2005
).
Given the similarities with these adaptors and SCAMP3's localization to membranes, including PI3P-rich endosomes (present studies; Castle and Castle, 2005
), we sought to determine whether knockdown or overexpression of SCAMP3 affected trafficking of EGFR. Surprisingly, depletion of SCAMP3 accelerated receptor degradation, whereas overexpression enhanced recycling. Moreover, the ability to enhance receptor recycling depended on SCAMP3's PY and PSAP motifs and its capability to be ubiquitylated. Together, these observations imply that unlike the adaptors described above, which promote degradation, SCAMP3 inhibits lysosomal degradation of EGFR. One mode of SCAMP3 function may involve inhibition of ESCRT-mediated sorting through competitive binding of Hrs and Tsg101, a process that may be enhanced by SCAMP3 ubiquitylation. This would be consistent with various studies that show Hrs and Tsg101 promote EGFR degradation and reduce recycling (Razi and Futter, 2006
; Raiborg et al., 2008
). Therefore, SCAMP3 may oppose Hrs and Tsg101 function at this level to support recycling.
However, our results suggest SCAMP3 has additional function(s), in parallel to ESCRTs that contribute to EGFR sorting. First, simultaneous knockdown of SCAMP3 with Hrs or Tsg101 did not inhibit EGF/EGFR degradation to the same extent as knockdown of Hrs and Tsg101 alone. Second, SCAMP3 knockdown in combination with the downstream proteins, Vps24 or CHMP6, also reduced the rates of EGF/EGFR degradation compared with knockdown of ESCRT-III subunits alone. Third, recycling of EGFR in SCAMP3-overexpressing cells was suppressed when a mutation of a highly conserved residue (W219A) was introduced. This residue is found in a cytoplasmic domain that likely contributes to the conserved function of all SCAMPs (Guo et al., 2002
; Liu et al., 2002
, 2005
; Liao et al., 2007
), but is not involved in ESCRT binding or ubiquitylation. Together, these results clearly conflict with the idea that SCAMP3 merely antagonizes ESCRT-EGFR interaction.
To further understand SCAMP3's role in regulating EGFR sorting, we examined whether MVB structure, formation, and incidence were also affected by SCAMP3-depletion. Our analysis by electron microscopy (EM) indicated that the structure of EGFR-labeled MVBs (size and incidence of ILVs), was not affected in SCAMP3-depleted cells. And the equal densities of labeled MVBs (number/cytoplasmic area) in control and knockdown cells at 30 min suggested to a first approximation that the rate of EGF-induced MVB formation (White et al., 2006
) was not altered. However, we observed a striking disparity in the incidence of EGFR-labeled MVBs at 60 min. In control cells, the density of MVBs decreased one-third, but in SCAMP3-depleted cells the density remained unchanged. This could not be accounted for by an increase in transport to lysosomes because appearance of EGFR-labeled late endosomes/lysosomes in control and SCAMP3-depleted cells at both time points was similar. Possibly a portion of EGFR relocated to the cell surface or to other endocytic organelles (non-MVB/late endosomal/lysosomal), and although we attempted to assess this quantitatively, no consistent picture has emerged. Nevertheless, the decrease of EGFR-labeled MVBs in control cells implies the presence of a previously unrealized process by which SCAMP3 normally facilitates loss of EGFR from this compartment.
On the basis of our results, we propose that SCAMP3 regulates EGFR trafficking by inhibiting ubiquitin-dependent sorting through competitive binding of ESCRTs and by promoting recycling. We have thought of two mechanisms of SCAMP3 action that could account for the loss of EGFR-labeled MVBs (Figure 13). First, SCAMP3 may promote formation of MVBs that function in recycling rather than degradation. There is already precedence for heterogeneity among MVBs (White et al., 2006
) and including those that might be specialized for exocytosis (Trajkovic et al., 2008
). Also EGFRs and Ndfip1, which is structurally similar to SCAMP3, have been identified in exosomes, probably resulting from exocytosis of MVBs (Putz et al., 2008
; Sanderson et al., 2008
). The formation of specific MVBs from PI3P-containing endosomes may be supported by SCAMP3 because SCAMPs are thought to contribute to the formation and function of polyphosphoinositide-containing domains in other contexts (e.g., exocytosis; Liu et al., 2005
; Liao et al., 2007
, 2008
). In the second possibility, SCAMP3 may facilitate removal of receptors from maturing, lysosomally directed MVBs to a recycling pathway largely distal to those used by TfR or induced by low EGF concentration (Sigismund et al., 2008
). In this model, SCAMP3 antagonizes ESCRT function by preventing (or reversing secondarily through retrofusion; van der Goot and Gruenberg, 2006
) sorting of receptors into ILVs and redirects them into tubules (seen in many of our EMs) that facilitate recycling. Notably, SCAMP3-regulated recycling may apply to receptors that are not polyubiquitylated and are subjected to deubiquitylation (Clague and Urbe, 2006
; Umebayashi et al., 2008
). Moreover, the two mechanisms suggested are not mutually exclusive and may even occur in tandem.
|
In conclusion, by studying the effects of SCAMP3 knockdown and overexpression, we have been able to show that SCAMP3 can regulate the degradative versus recycling fate of the EGFR. This regulation putatively involves SCAMP3 ubiquitylation and interactions with ESCRTs and may entail formation of recycling MVBs or recycling from lysosomally directed MVBs. In the future, a major challenge will be to clarify SCAMP3's specific contributions to receptor sorting and recycling, how its function is regulated by ubiquitylation/deubiquitylation and tyrosine phosphorylation, and how these events influence EGFR's growth-promoting actions.
| ACKNOWLEDGMENTS |
|---|
| Footnotes |
|---|
Address correspondence to: J. David Castle (jdc4r{at}virginia.edu)
Abbreviations used: ILV, intraluminal vesicle; MVB, multivesicular body; SCAMP, secretory carrier membrane protein.
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