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Vol. 21, Issue 1, 117-130, January 1, 2010
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Departments of *Molecular Genetics and
Microbiology, The Rappaport Family Institute for Research in the Medical Sciences, Technion-Israel Institute of Technology, Haifa 31096, Israel
Submitted June 22, 2009;
Revised October 27, 2009;
Accepted October 29, 2009
Monitoring Editor: Jonathan Chernoff
| ABSTRACT |
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| INTRODUCTION |
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Several scaffold proteins were described for the JNK signaling pathway; for example, β-arrestin is a scaffold protein shared by the ERK cascade as well as the SAPK cascade. β-arrestin specifically links the activation of seven transmembrane receptor to JNK3 activation (Miller and Lefkowitz, 2001
); CrkII mediates the activation of Rac1 in cells exposed to EGF (Girardin and Yaniv, 2001
); Filamin mediates the activation of JNK by TNF-
receptor signaling (Marti et al., 1997
); and the JNK-interacting proteins (JIP 1-3), which are able to associate with all the components of the SAPK module and additional signaling proteins and potentiate JNK activity. The JIPs can associate with both positive and negative regulators of JNK (Morrison and Davis, 2003
). In addition, all three JIPs are able to associate with the tetracopeptide repeat domain of the light chain of the microtubule motor protein kinesin-1 and thus can be transported as cargo molecules along the microtubule network within cells (Verhey et al., 2001
). Numerous JNK-associating proteins were also described to regulate JNK activity such as JAMP, a seven-transmembrane protein that binds JNK and is responsible for the increase in the duration of JNK signaling after stress (Kadoya et al., 2005
) and JNKBP1, which enhances JNK activation by MEKK and TGFβ-activated kinase 1 (TAK1; Koyano et al., 1999
). In addition, we have previously identified IKAP as a scaffold protein for the JNK pathway displaying functional interaction with JNK, MAP3K, and ASK1 (Holmberg et al., 2002
).
In an attempt to isolate novel JNK-binding proteins, we have used a kinase inactive JNK1 as bait to screen a cDNA expression library using the yeast Ras recruitment system, RRS, (Broder et al., 1998
). WDR62 was identified after this screen encoding a cDNA of a previously uncharacterized protein with little sequence homology with known proteins. The current manuscript describes for the first time the characterization of WDR62 and its possible role in mediating mRNA homeostasis after stress.
| MATERIALS AND METHODS |
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The following antibodies were used: anti-Myc monoclonal (9E10), anti-HA monoclonal (12CA5), anti-Flag (M2) monoclonal (Sigma-Aldrich), anti-
-tubulin monoclonal (Sigma-Aldrich), anti-c-Jun polyclonal (Santa Cruz Biotechnology, Santa Cruz, CA), anti-phospho-c-Jun polyclonal (Cell Signaling, Beverly, MA), anti-phospho-JNK polyclonal (Sigma-Aldrich), anti-TIA1 polyclonal (Santa Cruz), anti-DCP1
monoclonal (Abnova), anti-G3BP monoclonal (BD Laboratories, Lexington, KY), and anti-JIP polyclonal (Santa Cruz).
The antibodies anti-JBP5 polyclonal, anti-JBP774 polyclonal, and anti-WD40 polyclonal were prepared by rabbit immunization with the appropriate GST tagged peptide (the amino acids position corresponding to the peptide fragments used are depicted in Figure 1A). Anti-JBP5 antibody was affinity-purified. Initially, serum was precleared on a GST-attached Sepharose beads followed by absorption on GST-JBP5 attached Sepharose beads. IgG was eluted by 0.2 M glycine, pH 2.5, titrated directly into 2 M Tris-HCl buffer, and dialyzed against PBS containing 10% glycerol. Anti-WD40 clone 3G8 monoclonal was generated against GST-WD40 purified protein (Sigma-Aldrich).
Fluorochrome-tagged secondary antibodies for immunofluorescence assays were obtained from Jackson ImmunoResearch Laboratories (West Grove, PA).
Plasmids
The mammalian expression plasmid pCAN was used to express Myc-WDR62 and Myc-JBP5. GST-WD40 (aa 1-208), GST-JBP5 (aa 1018-end), GST JBP774 (aa 969-1109), GST-JBP5
7SP (aa 1018-1265), and GST-JBP
6SP (aa 1018-1326) were expressed using the pGEX kg bacteria expression plasmid.
Yeast plasmids used: pMyr-JBP5 and pMyr-WDR62-C encoding WDR62 starting from aa 1018 and 1215, respectively, fused to v-Src myristoylation signal in the pMyr yeast expression plasmid (Stratagene, La Jolla, CA). pMet425-JNK1KM-Ras encodes a kinase inactive JNK1 mutant (K149M). JNK1KM is unable to bind ATP as described in Holmberg et al. (2002)
. All other yeast expression plasmids were previously described (Hubsman and Aronheim, 2001
).
The following plasmids used, HA-MKK7, HA-JNK1, and HA-JNK2, were expressed using the SR
mammalian expression plasmid (Xia et al., 1998
). HA-JNKK2-JNK1 was previously described (Zheng et al., 1999
).
Fluorescent-tagged expression plasmids were kindly provided as follows: YFP-TIA1 and YFP-TTP by Dr. N. Kedersha (Harvard Medical School, Boston, MA), GFP-G3BP by Dr. J. Tazi (Institut de Génétique Moléculaire de Montpellier, Montpellier, France), M1-CFP by Dr. M. Philips (New York University School of Medicine, New York, NY), and GFP-JNKs (1-3) by Dr. M. Courtney (University of Kuopio, Kuopio, Finland).
Cell Culture and Transient Transfection
Human embryonic kidney 293T (HEK-293T), HEK 293, HeLa, MEF, and H1299 were maintained in DMEM containing 10% FCS and 1% penicillin and streptomycin and grown at 37°C and 5% CO2. HEK-293T cells were transfected with the appropriate expression plasmid using the calcium-phosphate (Ca2PO4) method. The total amount of plasmid DNA was adjusted to 10-12 µg in a total volume of 1000 µl. Cells were replaced with fresh medium 4-5 h after transfection and harvested 24 h after transfection.
Assays
For the luciferase reporter assay, cells were grown in 60-mm dishes, and transfection was performed in a total volume of 500 µl. For the immunofluorescence assay, cells were grown in six-well plates, and transfection was performed in a total volume of 400 µl. For the reporter assay, HEK-293T cells were cotransfected with expression plasmids and reporter plasmid 4 X AP1-luc. Luciferase activity was assayed using the Luciferase Assay System (Promega, Madison, WI) as described in the manufacturer's protocol.
Ras Recruitment System
Yeast growth, transfection, and screening protocol were performed as described in Hubsman and Aronheim (2001)
.
Western Blot
Cells were lysed in whole cell extract (WCE) buffer (25 mM HEPES, pH 7.7, 0.3 M NaCl, 1.5 mM MgCl2, 0.2 mM EDTA, 0.1% Triton X-100, 0.5 mM DTT, 20 mM β-glycerolphosphate, 0.1 mM Na2VO4, 100 µg/ml PMSF, Protease inhibitor cocktail 1:100; Sigma-Aldrich, P8340). The proteins were then separated by 10% SDS-PAGE, followed by a transfer to nitrocellulose membrane. Blots were blocked in 5% dry milk in PBS and washed three times for 5 min in PBS. All primary antibodies were diluted 1:500 except for the following: anti-
-tubulin 1:2000, anti-Flag 1:1000, and anti-JIP 1:100. Primary antibodies were incubated for at least 1 h at 4°C. Primary antibodies were detected using the corresponding HRP-conjugated secondary antibodies obtained from Sigma- Aldrich.
Coimmunoprecipitation
Antibodies against hemagglutinin (HA), Myc, or Flag were incubated overnight at 4°C with 400-600 µg of the HEK-293T protein extract. Protein A Sepharose beads (Sigma-Aldrich) were added to the extracts for 1 h at 4°C. After four washes with WCE buffer, the precipitated proteins were eluted using SDS-PAGE sample buffer. Samples were boiled for 3 min and then processed for Western blot analysis.
Kinase Assay
HEK-293T cells were cotransfected with the indicated amounts of WDR62 encoding plasmid together with 3 µg of either HA-JNK1 or 2, HA-ERK1, or HA-p38
. The total DNA content was kept constant by adding the corresponding empty expression vector. Twenty-four hours after transfection, cell lysate was prepared and rotated for 1 h at 4°C with protein A beads (Santa Cruz) that were preincubated with anti-HA antibodies. In vitro kinase assay was performed using purified glutathione S-transferase (GST) c-Jun1–79 as JNK substrate or myelin basic protein and His-JDP2 as ERK and p38 substrates, respectively. The reaction was performed in the presence of [
32P]ATP for 30 min at 30°C. Reactions were stopped by the addition of SDS-PAGE sample buffer. The samples were then boiled, and the phosphorylated proteins were resolved by 10% SDS-PAGE. The gel was dried and subjected to radiography. Phosphorylated c-Jun1–79 product incorporating 32P was quantified by PhosphoImager analysis (FLA 2000, Fujifilm, Stamford, CT). Fold activation of JNK1 and JNK2 was determined using TotalLab software (Newcastle upon Tyne, United Kingdom), taking into consideration the variations of expressed proteins.
RT-PCR
Semiquantitative RT-PCR was performed using Verso cDNA kit (Thermo Fisher Scientific, Rochester, NY) according to the manufacturer's instructions. mRNA was prepared by Trizol reagent (Sigma-Aldrich) according to the manufacturer's instructions.
The following primers were used: WDR62 CS1 F: GAAGTGGAAATCTGAGGCAAG; WDR62 CS1 R: GAAGTGCAGCTCGTGGATC; WDR62 CS2 F: CGCCACCACTTTGAGACAC; WDR62 CS2 R: TTCAGCTTCAGAGGCCTCCA; WDR62 CS4 F: GGACAGCAGCCCTGATTCTC; WDR62 CS4 R: GCAGAGCAGGAGCCAAATTG; WDR62 CS5 F: CTCTTCCCCGCAGCTCTG; and WDR62 CS5 R: ATGGGTGAACCTGGATGCC.
For WDR62 mRNA expression in human tissues the following were used: human WDR62-F (2372) 5'-CCGGAATTCTCCCTGAGCCCTGGAGAG; and human WDR62-R (2738) 5'-CCGCTCGAGACTCACTCAGCAGGCTGGC. For WDR62 mRNA levels following stress the following were used: human WDR62-F (1564) 5'-CCGGAATTCATCTCCCTCGGTGACAGTGAG; human WDR62-R (
6SP) 5'-CCCGCTCGAGTCAGCGAAAGGCAGAGCCGTG; human GAPDH-F 5'-CATCACCATCTTCCAGGAGCGA; and human GAPDH-R 5'-GTCTTCTGGGTGGCAGTGATGG.
Cellular Treatments
HEK-293T cells were treated with 0.5 mM arsenite for the indicated time or with 20 µM SP600125 for 1 h before arsenite treatment. UV-C irradiation was performed using an 8 W bulb at 30 cm distance for 1 min. The medium was removed before irradiation. The medium was reintroduced, and cells were returned to the incubator for 30 min before harvesting.
Stress Granule and Processing Body Induction for Immunofluorescence
HEK-293T cells were treated for 1 h with either 20 mg/ml puromycin or 0.5 mM arsenite or treated for 2 h with 0.5 mM arsenite with the addition of 20 mg/ml puromycin after 1 h of arsenite treatment. Heat shock was performed by incubating HEK-293T cells at 44°C for 30 min.
Immunofluorescence
HEK-293T cells were grown on glass cover-slips coated with collagen. After transfection or cellular stimulation, cells were fixed with 4% formaldehyde for 10 min. After washing with PBS, the cells were permeabilized with 0.1% Triton X-100 for 5 min and incubated in a blocking solution of 5% FCS in PBS for 30 min. The cells were then incubated with the appropriate primary antibody mixture for 1 h in PBS containing 1% FCS. The cells were washed three times with PBS and incubated with a secondary fluorescent antibodies mix for 1 h in PBS containing 2% BSA, 2% FCS, and 0.1% Tween-20. The cells were washed twice with PBS and processed for nuclear staining using DAPI (Sigma-Aldrich, D9542) at a final concentration of 1 µg/µl in PBS. The stained cells were then washed twice with PBS and mounted in Fluoromount-G (Southern Biotechnology, Birmingham, AL, 0100-01).
Confocal Microscopy
Fluorescence microscopy was performed using the Zeiss LSM 510 Meta inverted confocal microscope (Thornwood, NY) equipped with a 63x/1.4 NA oil objective, multiline Ar laser (488, 514 nm), DPSS laser (561 nm), HeNe laser (633 nm), and a UV Diode laser (405 nm). Each image was acquired from a single 1-µm thickness Z-stack using 510 LSM software (Zeiss).
Quantifications and Colocalization Analysis and Statistical Analysis
Image acquisition was performed with six Z-stacks with 0.5-µm intervals using the 510 LSM software (Zeiss). Colocalization analysis was performed on the midplane of each image. Weighted colocalization coefficient was calculated by the software for each channel. For quantification analysis, projection was applied on each image. The size and the number of stress granules (SGs) and processing bodies (PBs) were calculated using the ImageJ software (http://rsb.info.nih.gov/ij/). Statistical analysis was performed using Student's unpaired t test with one-tailed distribution.
| RESULTS |
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WDR62 Expression in HEK-293T Cells
We cloned the full-length cDNA of the major WDR62 (CS5 transcript) into a pcDNA-based mammalian expression plasmid fused to an N-terminal cMyc epitope-tag. In addition, we have generated three rabbit polyclonal antibodies and a mouse mAb as shown in Figure 1A. HEK-293T cells were transfected with the Myc-WDR62 expression vector followed by coimmunofluorescence analysis. Fixed cells were costained with anti-Myc (9E10) together with each one of the corresponding WDR62 rabbit polyclonal antibodies described above. We used the appropriate secondary antibodies to recognize the mouse and rabbit primary antibodies with Cy2 (green) and rhodamine (red) fluorescence, respectively. Both the monoclonal and the polyclonal antibodies reacted with the transfected WDR62 and exhibited a similar granular cytoplasmic staining (Figure 2A). In addition, we stained HEK-293T cells transfected with the WDR62 encoding plasmid with the WDR62 mAb (3G8) followed by rhodamine fluorescence (red) secondary antibody to recognize the mouse primary antibody and obtained identical pattern of WDR62 expression (Figure 2A). Surprisingly, cell lysate derived from HEK-293T cells transfected with WDR62 encoding plasmid, and separated by SDS-PAGE followed by Western blot analysis failed to detect the transfected Myc-WDR62 protein (Figure 2B lane 6). Once boiling was avoided and the sample was either loaded without heating or heated for 5 min up to 50°C, a single cross-reacting protein at the expected 175-kDa size was observed (Figure 2B, lanes 2-4).
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WDR62 Interaction with the JNK Module
To confirm the interaction between WDR62 and JNK, we used immunofluorescence of HEK-293T cells cotransfected with different GFP-JNK isoforms, either alone or in the presence of WDR62 expression plasmid. The transfected WDR62 was detected with anti-3G8 monoclonal antibodies. Although GFP-JNKs (1-3) display mostly nuclear staining in the absence of WDR62, coexpression of GFP-JNKs with WDR62 protein results in colocalization of the GFP-JNKs and WDR62 in the previously shown cytoplasmic granules (Figure 3).
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(Figure 4B, lanes 6 and 7). Western blot analysis with anti-HA antibody of total cell lysate and the immunoprecipitated anti-HA proteins demonstrated the presence of all the HA-tagged MAPK proteins at similar levels in the total cell lysate and anti-HA immunoprecipitation as well. Thus, we conclude that the interaction between the WDR62 fragment with JNK1 and JNK2 is specific to the JNK/SAPK signaling pathway.
We next sought to test whether or not WDR62 is able to associate with the JNKs upstream MAP2K, MKK7. Toward this end, we used HEK-293T cells transfected with HA-MKK7, Flag-JNK1, and Myc-JBP5 in different combinations. Coimmunoprecipitation was performed with anti-Myc antibody, and subsequently Western blot was performed sequentially with anti-Flag, anti-HA, and anti-Myc (Figure 4C). This analysis revealed that anti-Myc antibody failed to precipitate the transfected Flag-JNK1 and HA-MKK7 from control lysate lacking Myc-JBP5 (Figure 4C, left panel, lane 2). In contrast, both Flag-JNK1 and HA-MKK7 were efficiently precipitated in the presence of Myc-JBP5 (Figure 4C, left panel, lanes 3-5). Interestingly, precipitation of HA-MKK7 occurred even in the absence of Flag-JNK1, suggesting that Myc-JBP5 is able to associate with HA-MKK7 as well (Figure 4C, left panel, lane 4). Similar results were obtained when anti-HA antibody was used in coimmunoprecipitation of cell lysates derived from HA-JNK2, HA-MKK7, and Myc-JBP5 in different combinations (Supplemental Figure S3A). The interaction of JBP5 with JNK and MKK7 could be either direct or mediated through a third protein. To examine the possibility that the JNK-interacting protein, JIP, is mediating WDR62 interaction with HA-MKK7 and/or Flag-JNK, we first examined the expression of JIP in HEK-293T cell lysate. Although JIP protein could be readily observed in lysate derived from rat hippocampus, we could not detect JIP expression in HEK-293T cells (Supplemental Figure S3B). These results are in accordance with previous reports showing the JIP 1-3 proteins are expressed at low levels in nonneuronal tissues (Yasuda et al., 1999
; Kelkar et al., 2000
). Consistently, no JIP protein was detected after coimmunoprecipitation with anti-Myc antibody of cell lysate derived from cells expressing the tagged JNK tier proteins (Figure 4C). Collectively, although we cannot rule out the possibility that MKK7-WDR62 interaction is mediated through binding to endogenous JNK protein, it seems likely that WDR62 is able to associate with the upstream MAP2K component of the JNK tier, MKK7. Thus, the ability of JBP5 to form a protein complex with both JNK1/2 and the upstream activator MKK7 suggests that WDR62 may act as a scaffold protein for the JNK module.
WDR62 Potentiates JNK Activity
The fact that WDR62 may play a role as a scaffold protein for the JNK tier prompted us to examine the ability of WDR62 to potentiate JNK kinase activity in the absence of a signal. Myc-WDR62 was cotransfected into HEK-293T cells at increasing amounts together with constant levels of either HA-JNK1 or HA-JNK2. Cotransfection of either vehicle control or GFP was used as control for the basal JNK activity. The HA-JNKs were precipitated with anti-HA antibodies, and the kinase activity was determined using bacterially purified GST-cJun (1-79) using in vitro kinase assay (Katz et al., 2001
). Both HA-JNK1 and HA-JNK2 kinase activity measured in the presence of Myc-WDR62 was augmented with the increasing amounts of WDR62 used in the transfection (Figure 5, A and B). No change in JNK kinase activity was observed with the GFP control lysate.
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in the absence or presence of increasing expression of WDR62. In contrast to JNK, the kinase activity of neither ERK1 nor p38
kinase was affected in the presence of WDR62 protein (Figure 5, C and D). This is consistent with the inability of WDR62 to associate with either ERK or p38 MAPKs (Figure 4B).
WDR62-dependent JNK Activation Fails to Potentiate AP-1 Transcription
The consequence of JNK activation typically results in c-Jun phosphorylation leading to an increased transcription of AP-1–dependent genes. To examine whether or not WDR62 mediates this form of JNK activation toward AP-1 transcription, we measured AP-1–dependent transcription by using a luciferase reporter plasmid placed under the control of four tandem repeats of SV40 AP-1–binding elements (4 X AP-1-luciferase). HEK-293T cells were cotransfected with AP-1 reporter plasmid either alone or in the presence of WDR62 expression plasmid. Luciferase activity was measured 24 h after transfection in the absence of external stimuli (Figure 5E). Although AP-1 reporter alone resulted in a basal luciferase activity, coexpression with WDR62 resulted in a significant threefold reduced AP-1–dependent luciferase activity (p < 0.05, Figure 5E). To examine the AP-1–dependent transcription regulation by WDR62 in the presence of a persistent signal, we used expression plasmids encoding either MEKK activated form (
MEKK) or a JNKK2-JNK1 chimera. Both proteins have previously been shown to potentiate AP-1–dependent transcription through the JNK-c-Jun classical pathway (Zheng et al., 1999
; Holmberg et al., 2002
). Indeed, cotransfection of either
MEKK or JNKK2-JNK1 chimera resulted in 4- and 3.6-fold increase in AP-1 luciferase activity respectively (Figure 5E). However, the increase in AP-1 activity was completely abrogated in the presence of Myc-WDR62 (p < 0.05). Thus, although WDR62 is able to activate JNK kinase activity, JNK activation does not result in the classical signaling pathway leading to c-Jun phosphorylation and the corresponding increase in AP-1–dependent transcription.
WDR62 Localization Immunofluorescence
A possible explanation for the inability of WDR62 to result in c-Jun/AP-1 transcription activation could be that WDR62 is localized to a nonnuclear compartment. Indeed, WDR62 overexpression in HEK-293T cells resulted in granular cytoplasmic staining (Figure 2A). To identify the WDR62 containing granules, we used fluorescently labeled protein markers. These included cotransfection of WDR62 together with the following markers: early endosomes (EEA1-GFP), endoplasmic reticulum (M1-CFP), and golgi (GALT-CFP). None of the fluorescently labeled markers colocalized with Myc-WDR62 protein (Supplemental Figure S4). Therefore, we next stained HEK-293T cells for endogenous WDR62. HEK-293T cells exhibited dispersed faint cytoplasmic staining (see, for example, the nontransfected cells in Figure 7). We hypothesized that the granular cytoplasmic staining observed with anti-WDR62 antibodies is localized in cellular aggregates known as SGs. To examine this hypothesis, we transfected HEK-293T cells with fluorescently labeled proteins, known to form SGs upon overexpression. HEK-293T cells were transfected with either the T-cell intracellular antigen (YFP-TIA) or Tristetraprolin (YFP-TTP). Fixed cells were costained with anti-WDR62 (3G8) and analyzed using confocal microscopy (Figure 6A). Both YFP-TIA and YFP-TTP transfected cells display large granules. Interestingly, endogenous WDR62 displayed colocalization with both YFP-TIA and YFP-TTP into the SGs (Figure 6A). In contrast, GFP-G3BP, which is also known to forms large SGs upon overexpression in HEK-293T cells, failed to localize endogenous WDR62 protein into these granules (Figure 6A). To examine whether or not the recruitment of WDR62 to SGs also correlates with colocalization and activation of JNK, HEK-293T transfected with YFP-TIA, YFP-TTP or GFP-G3BP was costained with anti-phospho-specific JNK antibodies (Figure 6B). Consistent with the localization obtained with anti-WDR62 antibodies, phospho-JNK antibodies displayed SG staining when YFP-TIA and YFP-TTP were overexpressed but not by GFP-G3BP (Figure 6B), demonstrating that similar signaling specificity recruits WDR62 and an activated form of JNK to SGs. In addition, the SGs formed by TTP/TIA overexpression are distinct from those formed by G3BP (see below).
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leading to translation arrest and generation of SGs containing stalled mRNA. Toward this end, HEK-293T cells were either untreated or treated with puromycin, arsenite, or arsenite + puromycin and heat shock (Figure 7). Cells were fixed and costained with a stress granule marker (anti-TIA, green), PB marker (anti-DCP1
, red), and WDR62 (anti-WDR62, 3G8, purple). Cell nuclei were stained with DAPI (blue). Puromycin treatment resulted in an increase in the number of PBs, whereas TIA staining remains in the nucleus and WDR62 is dispersed in the cytoplasm. Arsenite treatment resulted in the appearance of numerous SGs and PBs as observed by the increase staining for TIA and DCP1
markers. In addition, WDR62 staining displays colocalization with TIA but not DCP1
. Costimulation of arsenite with puromycin results in a reduced number of SGs but a significant increase in their size. This is observed for both TIA and WDR62 staining. On the other hand, PBs displayed only an increase in size (Figure 7). The merge panel clearly demonstrates that WDR62 is colocalized to SGs, but no colocalization is observed in PBs. Statistical analysis of stained cells revealed that the weighted costaining coefficient for WDR62-TIA and phospho-JNK-DCP1
colocalization is between 0.9-1 (Supplemental Figure S5). Cells exposure to 44°C for 30 min resulted in the generation of few SGs and PBs, which consistently exhibits costaining of TIA with WDR62 but not with DCP1
. To identify the localization of active JNK following the above-mentioned stimuli, we used anti-phospho JNK antibody along with TIA and WDR62 antibodies (Figure 8). Although no staining for phospho-JNK is observed with puromycin treatment alone, arsenite and arsenite + puromycin treatments resulted in a strong nuclear staining as well as granular cytoplasmic staining that did not colocalize with either TIA or WDR62 (Figure 8). In contrast, the granular phospho-JNK staining colocalized with DCP1
in PB (see Figure 11B). Furthermore, after heat shock, phospho-JNK displays mainly strong nuclear localization. Merge images clearly demonstrate a distinct staining for phospho-JNK with either TIA or WDR62. Collectively, both artificial formation of SG by overexpression of SG-resident proteins and stimuli that result in SG formation lead to the recruitment of WDR62 to SGs and activated JNK to either SGs or PBs, respectively (Figures 7 and 8).
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WDR62 Expression Level after Stress
We sought to follow WDR62 expression after stimuli that induce the formation of SGs. We subjected cell lysate derived from HEK-293T cells treated with arsenite to SDS-PAGE and Western blot with anti-WDR62 antibody. The WDR62 expression level is elevated after arsenite treatment (Figure 9A). In addition, UV irradiation resulted in an increase in WDR62 as well. The increase in WDR62 expression parallels the increase in JNK activity as observed by anti-phospho-JNK (Figure 9A). To examine whether the increase in WDR62 expression level is due to an alteration in its mRNA level, we used RT-PCR of cDNA derived from mRNA of HEK-293T cells treated with arsenite. WDR62 mRNA level remained unchanged after arsenite treatment (Figure 9B). Therefore, the increase in WDR62 protein expression after arsenite treatment is due to either an increase in WDR62 translation or protein stability. To examine whether or not JNK activity is required for the arsenite-dependent elevation in WDR62 expression, we used the specific JNK inhibitor SP600125 and followed WDR62 expression in the presence and absence of arsenite. Interestingly, the use of the JNK inhibitor suppressed the basal WDR62 expression level and the induced WDR62 expression after arsenite stimulation (Figure 9C). As expected, the JNK inhibitor SP600125 also resulted in down-regulation of c-Jun expression and c-Jun phosphorylation (Figure 9C, middle panels). Thus, JNK kinase activity per se is responsible for the increase in WDR62 expression level after arsenite treatment. WDR62 harbors multiple serine and threonine residues followed by a proline residue which is a typical MAPK phospho-acceptor site. We used bacterially purified GST-fusion proteins to examine whether or not some of these potential MAPK phospho-acceptor sites can serve as JNK substrates in vitro. Indeed, GST-JBP5 and WDR62-C fragments encoding the C-terminal 505 and 309 amino acids, respectively, were efficiently phosphorylated by JNK (Supplemental Figure S7, lanes 3 and 4). WDR62 C-terminal domain contains several potential SP sites. GST-JBP5 purified fragment lacking the last six potential JNK phosphorylation sites completely lost its ability to be phosphorylated by JNK (Supplemental Figure S7, lanes 5 and 6). This suggests that WDR62 can serve as JNK substrate and phosphorylation is mapped to the six potential serine residues followed by proline located at the C-terminus.
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To examine whether a persistent activation state of JNK may affect WDR62-JNK association, we used cotransfection of Myc-JBP5 encoding plasmid either alone or with one of the three after JNK1 expression plasmids encoding HA-JNKK2-JNK1 (JNK is activated persistently by its upstream MAP2K), HA-JNK1 APF (JNK1 mutant in its TGY-dual phosphorylation site and thus cannot be activated by the upstream kinase MKK4/7), and HA-JNK1 (wild type JNK1). Cells were harvested 24 h after transfection, and lysate was used in immunoprecipitation with anti-HA antibody. Purified proteins were subjected to SDS-PAGE and Western blotting and probed sequentially with anti-HA and anti-Myc antibodies. Myc-JBP5 was efficiently precipitated from cell lysate that coexpressed HA-JNK protein independent of the activation state of JNK (Figure 10B, left panel, lanes 5-7). Control lysates lacking either HA-JNK protein or Myc-JBP5 failed to produce a signal with anti-Myc antibody. Collectively, we suggest that both JNK activation state and WDR62 phosphorylation at the carboxy terminal do not affect WDR62-JNK association. Further studies are currently being conducted to reveal the functional role of the WDR62 JNK phosphorylation.
To examine whether or not JNK activity plays a role in SG formation or dynamic, we treated HEK-293T cells with the JNK inhibitor (SP600125) in the presence and absence of arsenite. Subsequently, cells were fixed and stained for SGs (TIA) and PBs (DCP1
). JNK inhibition after arsenite treatment resulted in a significant increase in the number of SGs (p < 0.05) but the SG formed were smaller in size (p < 0.01) compared with the SGs formed in the absence of SP600125 (Figure 11A and Supplemental Figure S9). Furthermore, cells treated with arsenite in the presence of SP600125 displayed a significant increase in the number of PBs with a reduced size (Figure 11B and Supplemental Figure S9, p < 0.05). Collectively, we suggest that JNK activity plays a role in SG and PB formation and may regulate the mRNA fate in the cytoplasm after cell stress that involves phosphorylation of eIF2
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| DISCUSSION |
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The JBP5-encoded protein fragment displays 27% sequence identity with JNKBP1, a previously characterized JNK scaffold protein that enhances JNK activation by MEK kinase and TAK1 (Koyano et al., 1999
). Interestingly, JNKBP1 contains four N-terminal WD40 domains, and WDR62 is composed of 12 WD40 domains. WD40 repeats (also known as WD or β-transducin repeats) are short
40-amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD-containing proteins are predicted to form a circulated beta-propeller structure. WD-repeat proteins are found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. The underlying common function of all WD-repeat proteins is coordinating multiprotein complex assemblies, in which the repeating units serve as a rigid scaffold for protein interactions (Garcia-Higuera et al., 1996
). The WD40 domain of WDR62 does not play a role in association/activation of JNK and MKK7, since JBP5 lacks the WD40 domains associated with both JNK and MKK7. In addition, because both JBP5 and full-length WDR62 when overexpressed are localized into granules, the WD40 domain plays no role in WDR62 cellular localization.
Here we demonstrated that endogenous WDR62 and JNK are recruited to SGs upon cotransfection with YFP-TTP and YFP-TIA but not with GFP-G3BP. Overexpression of many stress granule-associated proteins is known to induce spontaneous SGs in the absence of additional stress (Kedersha et al., 2005
). Although TIA possesses a prion-like aggregation activity (Gilks et al., 2004
) and TTP requires protein kinase R activity (PKR) to result in SG assembly, both TIA and TTP are RNA-binding proteins. G3BP, on the other hand, demonstrates an oligomerization domain that is regulated by phosphorylation (Tourriere et al., 2003
). These differences may lay their differential ability to recruit WDR62 and phospho-JNK to SGs.
Exposure of cells to arsenite leads to the phosphorylation of the translation factor eIF2
, leading to polysome disassembly and SG and PB formation. Cellular staining of arsenite treated cells for WDR62 and phospho-JNK proteins reveals distinct staining to SGs and PBs, respectively. Whether or not the arsenite-activated form of JNK is localized initially to SGs and thereafter is translocated to PBs awaits further examination. Although JBP5 preserves the association with both activated JNK and after arsenite treatment (Figure 10), the binding of the full-length WDR62 to the endogenous activated JNK is yet to be examined. Nevertheless, it is demonstrated that JNK activity is important for SG assembly and formation of fully developed PBs. Taking into consideration that JNK activity is not completely inhibited by SP600125, the role of JNK in the SG assembly may be underestimated. In addition, JNK activity is crucial for phosphorylation and stabilization of WDR62 protein. WDR62 contains multiple S/TP potential MAPK phosphorylation sites. Using in vitro kinase assay, we were able to map six potential JNK phosphorylation sites located at the C-terminal domain (Supplemental Figure S7). Further research is required to map the JNK phosphorylation sites within WDR62 and examine their role in WDR62 stability and localization to SGs.
So far no one has been able to purify isolated SGs and PBs; nevertheless, the granules are morphologically defined by using immunostaining. Stress granules are composed mainly of mRNA, mRNA binding proteins with a known function in translational control, mRNA stability and metabolism, preinitiation and translation-related factors and signaling proteins with no known direct link to RNA metabolism. Interestingly, only very few kinases were described to be recruited to SGs and PBs. Fas-activated serine-threonine phosphoprotein (FASTK) is recruited to SGs via its direct interaction with TIA. TRAF-2, which is a TNF-
receptor adaptor protein, is localized to SGs. TRAF-2 recruitment to SGs correlates with its inactivation upon stress. A recent study (Arimoto et al., 2008
) identified the scaffold protein, Receptor-activated protein kinase C (RACK1), which is localized to SGs after type 1 stresses (arsenite, heat-shock). RACK1 binds the stress responsive MAP 3K of the JNK pathway, MEKK4/MTK1. Interestingly, RACK1 is also composed of seven WD40 repeats. RACK1 recruitment to SGs results in reduced MTK1 activity in the cytoplasm, and it is suggested that this is part of the mechanism whereby cancer cells escape from apoptosis after chemotherapy (Arimoto et al., 2008
).
Stress granules are sites of mRNA triage at which a cellular decision is made to route the stalled mRNA to reinitiation, degradation, or storage. How these decisions are made is still an open question. However, protein kinases such as the JNK may play a role in determining the fate of mRNA. Therefore, identification of JNK substrates among the proteins involved in mRNA metabolism and stability is a crucial step in understanding the role of JNK in mRNA and cellular fate after cellular stress.
Previous studies highlighted the role of JNK in mRNA stability of VEGF (Pages et al., 2000
). In addition, JNK response elements were identified as being required for the stabilization of the IL-2 mRNA through the binding of nucleolin and YB1 (Chen et al., 2000
).
Although we made multiple efforts to reduce the endogenous WDR62 expression levels with siRNA technology, we failed to do so. A recently published study (Ohn et al., 2008
) aimed to screen for genes that are involved in the assembly of SGs and PBs using RNAi technology. This technology identified 101 human genes which are required for SG assembly. Both WDR62 and JNK were not identified in this screen, probably due to either failure to reduce their levels or gene redundancy.
Collectively, classical JNK activation after cellular stress results in JNK activation and its nuclear translocation (Figure 12A). This involves the association with scaffold proteins such as JIP and β-arrestin. Here, we have identified a novel JNK scaffold protein, WDR62. WDR62 is shown to associate with both JNK and MKK7. WDR62 takes part of a nonclassical activation of JNK in response to cellular stress (Figure 12B). WDR62 associates with JNK in resting cells as well as after either transient or persistent stress signal. WDR62 activates JNK and can serve as JNK substrate. Artificial formation of SGs by overexpression of either TIA or TTP recruits WDR62 and phospho-JNK to SGs (Figure 12C). Stress that leads to phosphorylation of translation initiation factor eIF2
results in translation arrest and the accumulation of stalled mRNA in SGs and PBs. After stress, JNK is activated and WDR62 expression level is increased due to posttranscriptional mechanism. Subsequently, WDR62 is recruited to SGs and phospho-JNK to PBs. We propose that WDR62 may connect JNK activation with mRNA homeostasis and cellular fate in response to stress.
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| ACKNOWLEDGMENTS |
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| Footnotes |
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These authors contributed equally to this work. ![]()
Address correspondence to: Ami Aronheim (aronheim{at}tx.technion.ac.il).
Abbreviations used: JBP, JNK-binding protein; JNK, c-Jun N-terminal kinase; HEK-293, human embryonic kidney 293; MAPK, mitogen-activated protein kinase; PB, processing bodies; SG, stress granules; WDR62, WD repeat domain 62.
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