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Vol. 9, Issue 4, 759-774, April 1998
Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado 80309-0347
Submitted November 24, 1997; Accepted January 28, 1998| |
ABSTRACT |
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In Saccharomyces cerevisiae, the Mps1p protein kinase is critical for both spindle pole body (SPB) duplication and the mitotic spindle assembly checkpoint. The mps1-1 mutation causes failure early in SPB duplication, and because the spindle assembly checkpoint is also compromised, mps1-1 cells proceed with a monopolar mitosis and rapidly lose viability. Here we report the genetic and molecular characterization of mps1-1 and five new temperature-sensitive alleles of MPS1. Each of the six alleles contains a single point mutation in the region of the gene encoding the protein kinase domain. The mutations affect several residues conserved among protein kinases, most notably the invariant glutamate in subdomain III. In vivo and in vitro kinase activity of the six epitope-tagged mutant proteins varies widely. Only two display appreciable in vitro activity, and interestingly, this activity is not thermolabile under the assay conditions used. While five of the six alleles cause SPB duplication to fail early, yielding cells with a single SPB, mps1-737 cells proceed into SPB duplication and assemble a second SPB that is structurally defective. This phenotype, together with the observation of intragenic complementation between this unique allele and two others, suggests that Mps1p is required for multiple events in SPB duplication.
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INTRODUCTION |
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The MPS1 gene of Saccharomyces
cerevisiae encodes an essential protein kinase with roles in
spindle pole body (SPB)1 duplication and in
the spindle assembly checkpoint (Winey et al., 1991
; Weiss
and Winey, 1996
). The N terminus of Mps1p is unique, and its C-terminal
kinase domain shares greatest homology with the catalytic domains of
the mammalian kinases esk and PYT/TTK and the
Arabidopsis thaliana kinase PPK1 (Poch et
al., 1994
; Lauzé et al., 1995
; Kwart, personal
communication). Across the kinase domain, these proteins exhibit
approximately 40% identity and 60% similarity, but functional
homology has not yet been demonstrated (Bachant and Winey, personal
communication). Murine esk and human PYT/TTK are nearly
identical kinases that are expressed primarily in proliferating cells,
either transformed or stem cells (Douville et al., 1992
;
Mills et al., 1992
; Lindberg et al., 1993
; Hogg et al., 1994
). Like these mammalian enzymes, Mps1p is a
dual-specificity kinase. Mps1p will phosphorylate itself and the
exogenous substrate myelin basic protein (MBP) on serine and threonine
and, to a lesser extent, will autophosphorylate tyrosine residues
(Lauzé et al., 1995
).
Duplication of the SPB, the organelle that acts as the centrosome or
microtubule-organizing center in budding yeast, requires the Mps1p
kinase. The SPB is a trilaminar structure that remains embedded in the
nuclear envelope throughout the life cycle of the yeast, and it is
duplicated once during G1 of each cell cycle to provide the
two poles of the mitotic spindle. Electron microscopic examination
reveals several visible events in duplication (Byers and Goetsch, 1974
;
Winey and Byers, 1993
). The first step observed is satellite formation,
the appearance of a clump of material thought to be the precursor of
the new SPB. The satellite forms on the cytoplasmic surface of the
half-bridge, a thickened region of nuclear envelope adjacent to the
SPB. This satellite-bearing SPB morphology is also observed when cells
are arrested at Start in G1 by exposure to the mating
pheromone
-factor. Duplication is completed after passage through
Start, yielding side-by-side SPBs joined together by a complete bridge.
Later, the SPBs separate and migrate apart to organize the mitotic
spindle.
Cells with the temperature-sensitive-for-growth (ts)
mps1-1 mutation fail early in SPB duplication at the
nonpermissive temperature and form a monopolar spindle (Winey et
al., 1991
). Electron microscopy of these cells reveals a single,
large SPB with an enlarged and very prominent half-bridge structure.
Order-of-function experiments indicate that MPS1 is required
for the transition from satellite-bearing to side-by-side SPBs. When
mps1-1 cells are first arrested in G1 with
satellite-bearing SPBs by
-factor treatment and then released from
that block at the nonpermissive temperature, they fail in SPB
duplication (Winey et al., 1991
). Maintenance or stability of the satellite appears to be affected, because the existing satellite
from
-factor arrest is lost. Mutations that affect SPB duplication
later in the pathway have also been identified. In mps2 or
ndc1 mutants, duplication proceeds much farther but produces
a defective SPB that is not inserted into the nuclear envelope (Winey
et al., 1991
, 1993
).
Mps1p is essential for successful SPB duplication in every cell cycle.
In addition, this protein performs a nonessential function in the
spindle assembly checkpoint. This checkpoint initiates a mitotic cell
cycle arrest in response to SPB duplication failure or
microtubule-depolymerizing drugs, preventing aberrant cell division
(Hoyt et al., 1991
; Li and Murray, 1991
; Weiss and Winey, 1996
). At the nonpermissive temperature, checkpoint function is lost
and mps1-1 cells that have failed in SPB duplication cannot arrest. Instead, they carry out a monopolar mitosis with gross defects
in chromosome segregation, leading to a drastic drop in viability
(Winey et al., 1991
). Unlike the role of Mps1p in SPB duplication, its checkpoint function is only required when spindle integrity has been compromised (Weiss and Winey, 1996
). Strong overexpression of wild-type, epitope-tagged Mps1p causes mitotic arrest
through ectopic activation of the checkpoint, and this arrest
correlates with phosphorylation of the checkpoint protein Mad1p
(Hardwick et al., 1996
).
We have characterized a collection of ts alleles of the
MPS1 gene hoping to learn more about the functions of the
protein kinase it encodes. A total of 15 isolates were sequenced and
found to define exactly six alleles of the gene. Each contains a single mutation in the protein kinase domain. Several conserved residues are
affected, and these changes cause varying effects on the in vitro and
in vivo enzymatic activity of epitope-tagged Mps1p. Most
mps1 mutants display the single enlarged SPB observed
previously (Winey et al., 1991
), but the SPB morphology in
mps1-737 cells is strikingly different. These cells produce
a second, defective SPB similar to that reported for mps2
and ndc1 mutants (Winey et al., 1991
, 1993
). This
genetic and molecular analysis of MPS1 is not only
informative about the structure and function of protein kinases, but
also reveals a previously unknown requirement for Mps1p in SPB
duplication.
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MATERIALS AND METHODS |
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Yeast Strains, Cell Culture, and Genetic Techniques
The yeast strains used in this study are listed in Table
1. Yeast culture and genetic and
molecular techniques were as described by Ausubel et al.
(1994)
and Elble (1992)
. Escherichia coli DH5
(Sikorski
and Hieter, 1989
) was cultured and transformed as described by Ausubel
et al. (1994)
. Temperature-sensitive mps1
isolates were successively outcrossed to S288c-derived wild-type
strains (Table 1) to eliminate any irrelevant ts mutations
present in these heavily mutagenized strains (generally, four to six
outcrosses).
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Cell Synchronization and Release from Arrest
Cells were arrested in G1 with
-factor (7-10 µM) obtained
by a custom peptide synthesis using F-MOC chemistry on a peptide synthesizer (model 488, Applied Biosystems, Foster City, CA). Efficiency of arrest was monitored by budding index determination. Arrest was deemed successful if greater than 90% of a briefly sonicated sample of 100-200 cells was unbudded, and was later confirmed by flow cytometric determination of DNA content. Cells were
rinsed and released from the arrest into growth medium without
-factor that was equilibrated to the temperature being used for the
release. Reentry into the cell cycle was monitored by budding index and
flow cytometry.
Fine-Structure Mapping of Mutant Lesions
The mitotic recombination assay was performed essentially as
described by Mannis and Mortimer (1964)
. Homoallelic or heteroallelic diploids were cultured overnight in YPD (rich) liquid medium, and
approximately 107 cells were plated on YPD agar. Plates
were then exposed to a 4-krad dose of x-irradiation in a Torrex 120D
x-ray inspection system (EG&G Astrophysics Research, Princeton, NJ).
Experiments were performed in duplicate, and nonirradiated controls
were also performed for comparison of spontaneous and induced
recombination. After x-ray exposure, plates were incubated at the
nonpermissive temperature for 48 h. Mitotic recombination events
were assessed by counting the colonies that appeared at the
nonpermissive temperature.
The assay was calibrated using sequenced alleles of the HIS4
gene (Mathison and Culbertson, 1985
). Cells mutant for HIS4
are unable to grow without supplemental histidine. Heteroallelic
diploids were constructed that carried lesions 40 or 95 nucleotides
apart (his4-209 and his4-212 alleles, or
his4-519 and his4-504, respectively; Table 1).
Cultures of these diploids were plated on medium lacking histidine and
subjected to x-irradiation. Mutations only 40 nucleotides apart
(his4-209 and his4-212) could be clearly
resolved by this assay. This distance is similar to Mannis and
Mortimer's (1964)
initial estimate of 45 nucleotides as the limit of
resolution.
Gapped plasmid repair was performed as described (Rothstein,
1991
), making use of various unique restriction sites in the pRS316-derived plasmid pMPS1
B. For some strains, the lesion was further mapped within the kinase domain by inducing recombination between the chromosome and an MPS1 plasmid truncated at the
KpnI site in the kinase domain (Lauzé et
al., 1995
). x-Irradiation was performed as described above for the
mitotic recombination assay.
Nucleic Acid Techniques
DNA was manipulated by standard techniques as described by
Ausubel et al. (1994)
. Plasmid DNA was prepared from
E. coli with Wizard prep kits (Promega, Madison, WI).
Plasmid Constructs.
An EcoRI-SalI
restriction fragment containing the MPS1 gene was cloned
into a centromeric, URA3-marked pRS316 vector (Sikorski and
Hieter, 1989
; Lauzé et al., 1995
), and this clone was
modified as follows to create pMPS1
B. The
EcoRI-NotI fragment was removed from the
polylinker, the ends filled in with Klenow, and the plasmid religated;
this eliminated the BamHI site in the linker, making the
site in the gene unique. Later this clone was modified by partial
digestion with Asp718 (an isoschizimer of KpnI),
followed by fill-in and religation to destroy the KpnI site.
This clone, which now contained unique BamHI,
KpnI, and MroI sites in the protein kinase
domain, was named pMPS1
BK. DNA fragments containing the individual
mps1 mutations were placed into this construct.
Polymerase Chain Reaction (PCR) Amplification and DNA Sequencing.
For sequencing of the mutant lesions, yeast genomic DNA isolated
by the method of Hoffman and Winston (1987)
was used as template for
standard PCR reactions performed with Taq polymerase
(Promega) in a PTC-100 thermal cycler (MJ Research, Watertown, MA).
Custom oligos synthesized by Life Technologies (Gaithersburg, MD) were used to amplify portions of the MPS1 gene encoding the
kinase domain. The products of four independent amplifications were
pooled and then sequenced on both strands, using the Sequenase PCR
Product Sequencing Kit (United States Biochemical, Cleveland, OH) as
directed by the supplier. For lesions that had been mapped to one-half of the kinase domain, only that region was sequenced; for the others,
the entire kinase domain was sequenced. Once the lesions were
identified, these regions were amplified, and the products of several
independent reactions were pooled and cloned into an otherwise
wild-type copy of MPS1 in the plasmid pMPS1
BK using unique BamHI, KpnI, and MroI
restriction sites. These clones were then sequenced to confirm the
presence of the mutant lesion and absence of PCR-derived errors.
Sequencing of double-stranded plasmid was performed with a Sequenase
2.0 kit (United States Biochemical) using 1 pmol template and 2 pmol
primer, annealed by coprecipitation in ethanol after alkaline
denaturation of the template.
Primers
For amplification: BSK1 5'-GAA TCT TTT CAT TAT TG-3', MPS D 5'-CGA AAA AAT AGA ACT TTT GGG-3', MPS I 5'-CCA CAT CAT TGA GAT CAT C-3', and MPS J 5'-GCA TAA ACG CAA ATC ACG C-3'. For sequencing: BKS1 5'-CAG TTT CCA AGG CCA AAA-3', BSK1 5'-GAA TCT TTT CAT TAT TG-3', MPS F 5'-CGG CAT TCC TAA TAA GG-3', MPS H 5'-GTT TTA GTG AAA GGT ATC-3', MPS K 5'-GTA AAT GAC TCC CAG TAC G-3', and MPS L 5'-TCC CAA TTT GAG TTT CAC G-3'.
Cytological Techniques
Yeast cells were prepared for flow cytometry as described by
Hutter and Eipel (1979)
using the DNA stain propidium iodide (Sigma
Chemical, St. Louis, MO). Stained cells were analyzed on a FACScan flow
cytometer (Becton Dickinson, San Jose, CA) using the LYSYS software
package to obtain and analyze data.
Yeast cells were prepared for thin sectioning as described by Byers and
Goetsch (1974
, 1975
). After sectioning, some sections were stained a
second time with uranyl acetate to increase contrast. Serial sections
were viewed on a Philips CM10 electron microscope (Philips Electronic
Instruments, Mahwah, NJ). Immunofluorescent staining of microtubules
was performed as described by Kilmartin and Adams (1984)
as modified by
Jacobs et al. (1988)
, using the rat monoclonal antibody
YOL1/34 (anti-
-tubulin; Accurate Chemical, Westbury, NY).
The yeast strain IAY18, which carries a SPC42 deletion
allele (spc42
1::LEU2) and also a green
fluorescent protein (GFP)-tagged allele of SPC42 integrated into the
chromosome and present in three copies (TRP1::SPC42-GFP),
was obtained from J. Kilmartin and I. Adams (Medical Research Council,
Cambridge, England). The deletion and GFP alleles were subsequently
crossed into all six mps1 mutant backgrounds. GFP
fluorescence was used to observe SPBs in these cells after growth at
the permissive and nonpermissive temperatures. Cells were observed live
or after a 5-min fixation with formaldehyde and staining of DNA with
4,6-amidino-2-phenylindole (DAPI). Cells were viewed with a Zeiss
Universal microscope (Carl Zeiss, Oberkochen, Germany). Images were
obtained using a CCD camera (Empix Imaging, Mississauga, Canada),
IMAGE-640 frame-grabber board (Matrox, Dorval, Canada), and MetaMorph
software (Universal Imaging, West Chester, PA).
Protein Techniques and Kinase Assays
For expression of the GST-tagged fusion proteins in the
wild-type yeast strain FLY14A (Table 1) transformed with tagged
plasmids, cells were cultured in selective medium (for retention of the plasmid) containing 2% raffinose, a sugar that does not repress the
GAL1 promoter as glucose would. Because protein synthesis or
stability could potentially be thermolabile, all cultures were grown at
25°C. Galactose was added to the medium to a final concentration of
4% when the OD600 reached 0.5-0.8 to induce protein
production, and cultures were induced for 6-8 h. For Western blots,
cells were lysed in 1× Laemmli sample buffer (Ausubel et
al., 1994
) by vortexing with 0.45- to 0.52-mm glass beads for 5 min at 4°C. Lysates were then separated on 8% SDS-PAGE gels (Ausubel
et al., 1994
) and electrophoretically transferred to
polyvinylidene difluoride (PVDF) membranes. GST fusions were detected
on Western blots with goat anti-GST primary antibody (Pharmacia
Biotech, Piscataway, NJ) diluted 1:1000, alkaline
phosphatase-conjugated secondary antibody, and the NBT/BCIP color
reaction assay (Promega, Madison, WI).
For kinase assays with GST-Mps1p fusion proteins, cells were cultured
and induced as described above. Cells were collected and washed once in
cold water, and cell pellets were quick frozen in liquid nitrogen and
stored at
70°C. For small-scale purification (for one or a few
kinase assays, from up to 100 ml of culture) cells were disrupted by
vortexing for 5 min at 4°C in 0.5 ml buffer B (containing protease
and phosphatase inhibitors; described in Lauzé et al.,
1995
) with 300 µl of 0.45- to 0.52-mm glass beads. When a larger
amount of protein was desired, cells were lysed in the same buffer by
passage through a French pressure cell press (American Instrument,
Silver Spring, MD). After lysis, the lysate was clarified by
centrifuging for 10 min at 5,000-10,000 × g at 4°C,
and the supernatant was incubated with glutathione-Sepharose (Pharmacia) for 1-2 h at 4°C. The resin was washed three times in
buffer B, three times in buffer B1, and twice in nondetergent buffer
(Lauzé et al., 1995
). This material was used for
kinase assays as described in Lauzé et al. (1995)
,
with two modifications: assays were performed at 25°C or 35°C and
were carried out for 10-15 min.
Kinase assay material was separated on 15% Anderson SDS-PAGE
gels (Anderson et al., 1973
). The top half of the gel was
subjected to electrophoretic transfer onto a PVDF membrane, while the
lower half was stained with Coomassie Brilliant Blue (Ausubel et
al., 1994
). Phosphorylation in both halves was scanned and
quantitated with a Storm 860 phosphorimager (Molecular Dynamics,
Sunnyvale, CA) with the ImageQuaNT analysis package. GST-Mps1 protein
levels on the blot portion were then quantitated using 1:1000 anti-GST antibody and alkaline-phosphatase secondary antibody, with the alkaline
phosphatase substrate Attophos (JBL Scientific, Santa Clara, CA) used
for detection and analysis by the phosphorimager.
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RESULTS |
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Six Alleles of MPS1 with Mutations in the Kinase Domain
Winey et al. (1991)
isolated the
mps1-1 allele in a cytological screen for mutants with
defects in microtubule organization. Similar screens carried out in
other laboratories have identified ts isolates that fail to
complement the temperature sensitivity of mps1-1 and could
represent new alleles of the gene. These were designated 6 (from D. Koshland, Carnegie Institute of Washington, Baltimore, MD);
412, 422 (J.V. Kilmartin, Medical Research
Council, Cambridge, England); 3704, 3497, and
3796 (T. Huffaker, Cornell University, Ithaca, NY). A
collection of ts yeast strains (Hartwell, 1967
) was also
screened in this laboratory for additional strains that could not
complement mps1-1, yielding isolates 502, 585, 676, 688, 737, 773, 1169, and 1237 (Siewert, personal
communication). Complete outcrossing and characterization of all new
isolates was impractical due to their number and origin. Ten of the 14 strains with noncomplementing mutations were drawn from the same collection of ts strains (Hartwell, 1967
; Siewert and
Kilmartin isolates) and could therefore have been redundant.
To quickly determine the minimum number of alleles represented by these
isolates, we employed an x-ray-induced mitotic recombination assay
(Mannis and Mortimer, 1964
) and assigned the strains to mitotic
recombination groups (the mps1-6 isolate was not obtained until much later and was not included in the recombination analysis). For this assay, heteroallelic diploids and homoallelic control strains
were constructed. Heteroallelic diploids carried two alleles of
MPS1 that might or might not be different, and homoallelic controls carried two identical alleles derived from the same isolate. Diploids were x-irradiated to cause chromosome breakage, thereby inducing mitotic recombination events. Mitotic recombination could have
given rise to two distinct outcomes: if the genetic lesions in question
were located in different regions of MPS1, recombination or
gene conversion in between the lesions could have reconstructed a
wild-type copy of the gene, generating Ts+
(temperature-resistant) cells; if the lesions were identical or fell
very close together in the gene, no Ts+ cells would have
been generated.
Using this assay, a variety of mps1 isolate combinations were tested for their ability to recombine. Diploids were plated on rich medium, exposed to a 4-krad dose of x-irradiation, and incubateded at the nonpermissive temperature (see MATERIALS AND METHODS). As predicted, two distinct classes were found (Table 2). One class displayed obvious recombination (a low level of spontaneous recombination and a dramatic increase upon x-irradiation), indicating that the isolate pair in question was nonallelic. The other class displayed very little or no recombination, indicating that these isolate pairs were either allelic or contained two mutant lesions that were very close together. All isolate pairs that failed to recombine were placed into the same mitotic recombination group. The isolates fell into five recombination groups and therefore defined at least five different alleles of MPS1 (Table 3). In all cases, recombination results were internally consistent for all members of a group that were tested. Three groups contained multiple isolates, while two had only a single member. One representative of each group was chosen for complete outcrossing and further characterization (Table 3), and all isolates were later sequenced.
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Gapped plasmid repair was used to map the molecular lesions in these
alleles to particular regions of the gene (Rothstein, 1991
).
Restriction enzymes were used to create small gaps in a plasmid
carrying the wild-type MPS1 gene, and gapped constructs were
then transformed into yeast strains carrying various mps1 mutations (see MATERIALS AND METHODS). In each case, gap repair data
(our unpublished results) indicated that the molecular lesion occurred
between the BamHI and MroI restriction sites in
MPS1, which bracket the region encoding the protein kinase
domain (Figure 1). In some cases,
mutations were further localized within the kinase domain. The plasmid
pMPS1-KpnI
(Lauzé et al., 1995
) contains a deletion allele of the gene that is truncated at the KpnI
site in the middle of the kinase domain, and cannot complement
mps1 mutations. Mutant strains harboring this plasmid were
x-irradiated to induce chromosome breakage, similar to the mitotic
recombination assay described above, resulting in plasmid-to-chromosome
conversion (see MATERIALS AND METHODS). Because of the KpnI
deletion, the plasmid could only supply wild-type coding information
for the 5'-half of the kinase domain. The mps1-412 allele
was rescued by recombination, indicating that the lesion lies 5' to the
KpnI site. Both mps1-1 and mps1-1237
were not rescued, indicating that these alleles carry lesions 3' to
KpnI.
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The area identified by gap repair spanned approximately 800 base pairs (bp) and contained the entire kinase domain, and in some cases the location of the mutation was restricted to one-half of this region. A variety of primers were used for PCR amplification and DNA sequence analysis of the appropriate regions (see MATERIALS AND METHODS). To determine the exact mutation, sequence from the mutants was compared with the sequence generated using wild-type S288c (Table 1) genomic DNA as template. All members of each mitotic recombination group were sequenced in parallel. The mps1-6 isolate was obtained much later than the others and was never examined by gap repair. Instead, we proceeded directly to sequencing of the kinase domain to search for a mutation.
Every mutant strain contained a single base substitution in the region of MPS1 that encodes the protein kinase domain (Figure 1). Together, the five recombination groups (Table 3) and mps1-6 define exactly six alleles of the gene. In all cases, members of a mitotic recombination group shared identical changes. This result was somewhat surprising, considering that the largest recombination group (IV, with six members) was made up of isolates identified in three different laboratories and drawn from two independent ts mutant collections. Three types of amino acid substitutions were found (Figure 2): glutamate replaced by lysine (three alleles); cysteine replaced by tyrosine (two alleles); and proline replaced by serine (one allele). Several residues that are conserved among many protein kinases were affected, particularly the glutamate at position 486 (E486K; mps1-737) and proline at position 608 (P608S; mps1-1237). All mutations, with the exception of mps1-412, affected residues that are identical in Mps1p and its closest homologs, esk, PYT/TTK, and PPK1 (Figure 2).
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After sequencing, PCR products containing the individual mutations were
placed into a pristine, unmutagenized copy of MPS1 in a
centromeric vector, and the inserts were subsequently sequenced to
confirm the presence of the correct single nucleotide change. The
cloned mutant alleles were introduced into a mps1-1 mutant strain and into a strain carrying a null allele of MPS1 to
confirm that these single base changes were sufficient to confer
temperature sensitivity (Lauzé et al., 1995
). Each
mutant clone allowed growth of the cells up to approximately the
correct temperature level, although each strain grew at a slightly
higher temperature than expected. Centromeric plasmids may be present
at two or three copies in a yeast cell, and this increased dosage of
mutant alleles appeared to provide a slight growth advantage.
Phenotypic Analysis of mps1 Mutant Strains
Yeast strains carrying the ts alleles (Table 1) were examined carefully, and their behavior was compared with that of the prototypic allele, mps1-1. These studies were performed using one fully outcrossed representative from each mitotic recombination group (Table 3) and the mps1-6 allele. All proved to be recessive, and introduction of the wild-type MPS1 gene on a plasmid fully restored normal growth. During construction of the collection of heteroallelic diploids for mitotic recombination assays, partial intragenic complementation between some alleles became evident (Table 3). When a diploid cell carried the mps1-737 allele in combination with either mps1-412 or mps1-3796, this cell was able to grow at temperatures of 36-37°C, which normally were lethal for each allele alone and for all other heteroallelic diploids. Because this complementation was partial and diploids could not grow at 38°C, the mitotic recombination assay could still be performed. No other allele combinations exhibited this effect.
For each allele, several phenotypes were examined: cell cycle behavior
at the nonpermissive temperature, as judged by flow cytometry and
budding index determination; cell viability and formation of diploids
after a brief shift to the nonpermissive temperature; and SPB
morphology as determined by electron microscopy. In general, the
behavior of the alleles was very similar. In all cases, when cells were
shifted to the nonpermissive temperature, SPB duplication failed.
Because MPS1 is required for the spindle assembly checkpoint
(Weiss and Winey, 1996
), there was no cell cycle arrest in response to
the spindle defect, and cells proceeded through an aberrant mitosis.
This event generated aploids, aneuploids, and cells of increased ploidy
and produced a distinctive profile when the DNA content of cells in the
culture was monitored by flow cytometry (Figure
3). Not surprisingly, this aberrant
mitosis was usually a lethal event. For all alleles, at least 90% of
cell viability was lost after a 4-h incubation at the nonpermissive temperature of 37°C. A characteristic feature of monopolar spindle mutants is that after brief exposure of a haploid culture to the nonpermissive temperature, surviving cells often recover with a diploid
DNA content (Winey et al., 1991
). This phenomenon, referred to as diploidization or endomitosis, is thought to occur because the
monopolar spindle segregates all the chromosomes to that single pole,
creating a diploid and an aploid cell (see Thomas and Botstein, 1986
).
In mps1-1 cultures, the few surviving cells are generally diploid (Winey et al., 1991
). This behavior was observed for
all alleles, but the recovery of diploids in mps1-737
cultures occurred at a lower frequency (Table
4).
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Unusual SPB Morphologies in mps1-737 Cells
SPB phenotypes of the mps1 alleles were also examined
by electron microscopy. In mps1-1 strains, a single SPB is
seen by electron microscopy. It is enlarged compared with wild-type,
bears a prominent and elongated half-bridge, and organizes a monopolar
spindle (Winey et al., 1991
). The same phenotype was seen in
most other mps1 strains. Figure
4 shows examples, with the distinctive
enlarged half-bridge indicated by an arrow. However, this was not the
case with cells containing the mps1-737 mutation. A
different phenotype was observed for this allele. The typical prominent
half-bridge was generally not present, and sometimes a structure
resembling a second SPB was observed. Examples of these structures are
shown in Figure 5. This second SPB was
found lying close to or separated from its sibling and did not appear
to lie in the plane of the nuclear envelope, a morphology that is very
similar to the defective SPB found in mps2 and
ndc1 strains (Winey et al., 1991
, 1993
).
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It was difficult to assess the significance of this phenotype because
only a few examples were found. Examination of this phenotype in a
large data set by electron microscopy would have been impractical and
difficult. Therefore, we further investigated the presence of a
possible second SPB using an indirect immunofluorescence approach. The
second, defective SPB found in mps2 and ndc1
strains can nucleate microtubules on its cytoplasmic face (Winey
et al., 1991
, 1993
). This property makes the structure easy
to locate even when it has migrated far from the intact SPB, because
examination of microtubule organization in these cells by indirect
immunofluorescent staining of tubulin reveals two clear foci of
staining, making this a more accurate method for assessment of SPB
number than electron microscopy. In mps1-1 cells, only one
focus of microtubule staining is seen (Winey et al., 1991
).
Since the mps1-737 second SPB had been seen bearing
cytoplasmic microtubules on its outer plaque (see Figure 5F'), this
method was used to count microtubule foci in mps1-737 cells
before and after exposure to the nonpermissive temperature. At the
nonpermissive temperature, a considerable number of cells exhibited a
second focus of staining but showed no evidence of normal spindle
formation (our unpublished observations). An mps1-3796
strain, which appeared by electron microscopy to contain only one SPB,
was examined as a control and displayed only one focus of staining (our
unpublished observations).
Because two SPBs that are close to one another cannot be unambiguously
resolved by microtubule staining, a different technique was employed to
more accurately quantify this phenotype. The Spc42p protein is a
component of the SPB and localizes to the central plaque region (Rout
and Kilmartin, 1991
; Donaldson and Kilmartin, 1996
). When the
SPC42 gene is tagged with GFP and no wild-type allele is
present, Spc42p-GFP can be seen as two bright dots at the spindle poles
after SPB separation has occurred (Adams and Kilmartin, unpublished
observation; see Figure 6). The
TRP1::SPC42-GFP and
spc42
1::LEU2 alleles were introduced into the
six mps1 mutant backgrounds for this experiment. After
exposure to the nonpermissive temperature, cells were fixed and stained
with DAPI. GFP fluorescence was then visualized and the resulting SPB
dots were counted. The numbers collected and phenotypes observed are
shown in Figure 6. For five mps1 alleles, very few large
budded cells displayed two dots of fluorescence at the nonpermissive
temperature. Most cells contained a single SPB, which was usually found
near the bud neck (as in Figure 6B). In contrast, nearly all
mps1-737 cells contained a second SPB as evidenced by two
foci of Spc42-GFP fluorescence, confirming the previous microtubule
staining and electron microscopic results (Figure 6C). The two SPBs
were often found fairly close to one another
in 64% of cells with two
dots, both dots were located in the same cell body. Generally, the SPBs
were found in the cell body that contained the majority of DAPI
staining, although aploid bodies with only mitochondrial DNA staining
that contained an SPB were observed (our unpublished results).
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The presence of two dots of Spc42p-GFP fluorescence in almost all
mps1-737 cells indicated that they could proceed partially through SPB duplication and assemble a defective SPB. This unexpected phenotype suggests an additional, later requirement for MPS1
in the duplication process, but it was possible that the
mps1-737 phenotype arose from an early structural mistake
in satellite formation that precluded complete duplication. Cells with
the mps1-1 mutation fail to form a satellite at the
nonpermissive temperature and also fail to maintain a satellite
deposited by pretreatment with
-factor (Winey et al.,
1991
). If a defect in satellite formation were responsible for the
mps1-737 SPB morphology, then
-factor pretreatment to
supply the cell with a normal satellite before exposure to the
nonpermissive temperature should correct the defect. However,
mps1-737 cells treated in this manner still failed in SPB
duplication. Severe DNA missegregation was seen by flow cytometry, and
aberrant microtubule arrays with no spindle or connection formed
between the two foci of staining were again observed by
immunofluorescence (our unpublished observations). These results are
consistent with a later requirement for MPS1 function SPB
duplication.
Characterization of the Mutant Proteins
An N-terminal GST epitope tag was used to monitor and purify
mutant Mps1p proteins (Mitchell et al., 1993
). The mutant
alleles were tagged as described by Lauzé et al.
(1995)
by excision of a HincII fragment containing the gene
from each centromeric mutant clone and placement into the GST vector
(see MATERIALS AND METHODS). The resulting constructs contained all but
the first two codons of the open reading frame, and overproduction of
tagged fusion proteins could be induced by addition of galactose to the
growth medium. The tagged proteins are referred to as GM- followed by WT (for the wild-type enzyme) or by the allele number. Previously, overexpression of GM-WT has been shown to cause a mitotic arrest by
ectopic activation of the spindle assembly checkpoint (Hardwick et al., 1996
). The overexpression phenotype of the tagged
mutant proteins in the wild-type strain FLY14A (Table 1) was examined. When expression of each was induced with galactose at 25°C and cell
cycle distribution of the induced cultures monitored by flow cytometry,
some degree of G2/M delay or arrest was also observed (our unpublished
observations). No such response to galactose was evident in cultures
expressing GST from the pEG(KT) vector without insert. This indicated
that the tagged mutant enzymes must possess sufficient in vivo kinase
activity to activate the spindle assembly checkpoint in this
experimental situation.
The GST-Mps1p fusion protein has a predicted molecular weight of 112 kDa. However, the wild-type-tagged protein has been shown to migrate
at a higher apparent molecular weight on a Western blot as a broad and
somewhat indistinct band (Lauzé et al., 1995
). After
treatment with protein phosphatases this band shifts down to the
predicted molecular weight, suggesting that altered gel mobility is
largely a result of phosphorylation. The observation that a
catalytically inactive "kinase dead" form exhibits no band shift
indicates that autophosphorylation is likely to be responsible (Lauzé et al., 1995
). When the mutant proteins were
overexpressed, we observed that gel mobility varied greatly between the
different mutant proteins but was reproducible for any given mutant
protein (Figure 7A). Some proteins, such
as GM-412 and GM-3796, migrated similarly to GM-WT. Others migrated
more quickly, with the most dramatic example being GM-1. This protein
migrated as a single tight band at about the correct predicted
molecular weight, similar to the migration of the catalytically
inactivated protein (Lauzé et al., 1995
). Other
fusions displayed intermediate changes in gel mobility. As with the
wild-type protein, mobility differences very likely arose from varying
degrees of autophosphorylation, and so they may reflect different
levels of kinase activity in the cell. The mutant proteins were
generally present at lower levels than GM-WT.
|
Kinase Activity of the Mutant Proteins
The in vitro kinase activities of all six mutant proteins were compared with that of wild type. For this experiment, wild-type cells (FLY14A; Table 1) with vector carrying no insert, GM-WT, or GST-tagged mutant alleles were induced for 8 h to produce sufficient protein and then collected and lysed. Tagged proteins were purified and used for kinase assays (Figure 7B). In this experiment, approximately equal amounts of protein were present in each lane, as determined by Western blotting (see MATERIALS AND METHODS). Both autophosphorylation (shown) and activity against the exogenous substrate myelin basic protein (our unpublished results) were tested and behaved similarly. No kinase activity was detected from the control strain (pEG(KT)), whereas substantial activity could be attributed to GM-WT. The mutant proteins varied in their activity. Most appeared to be largely inactive in vitro. Only two proteins, GM-6 and GM-1237, demonstrated significant kinase activity. These two mutant enzymes were examined more closely.
Because these mutations cause a ts phenotype in the cell, we investigated the possible thermolability of the GM-6 and GM-1237 mutant proteins in kinase assays performed at 35°C, a temperature that is nonpermissive for both corresponding mutant strains. When wild-type protein is assayed at this temperature, autophosphorylation signal is unchanged, although phosphorylation of MBP is somewhat reduced. To compare wild-type and mutant kinase activities, the three purified proteins were assayed in parallel at 25°C and 35°C (Figure 8). After separation of kinase assay material on SDS-PAGE gels, the portion of the gel containing GST-tagged Mps1p was Western blotted. Autophosphorylation and phosphorylation of MBP were quantitated, and similar Mps1p protein loadings were confirmed by Western blot using a chemifluorescent detection substrate (see MATERIALS AND METHODS). Two trends were apparent from the data (Figure 8). First, the activities of GM-6 and GM-1237 were consistently lower than that of GM-WT. Second, both of the mutant kinases clearly retained substantial activity at 35°C; they were not obviously thermolabile in this in vitro assay. For the corresponding mps1-6 and mps1-1237 mutant strains, the nonpermissive temperature is 34°C. This result suggests that thermolability of these mutant proteins may not arise from a general loss of kinase activity, but may involve interactions with other factors within the cell.
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DISCUSSION |
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We have described the phenotypic and molecular characterization of six alleles of the MPS1 gene. Each allele contains a single point mutation in the region encoding the protein kinase domain, and these lesions affect the activity of the resulting mutant kinases in different ways. Five of the six alleles cause the same type of early SPB duplication failure. However, cells carrying the mps1-737 allele proceed farther in duplication before they fail. This phenotype suggests that the Mps1p kinase is required for multiple events in SPB duplication.
The Mutant Lesions
The fact that all six ts mutations occur in the
C-terminal protein kinase domain indicates that Mps1p kinase activity
is likely to be essential for its physiological role. This collection
of alleles probably represents a variety of defects in ATP binding, substrate binding, and catalytic activity; however, most alleles produce the same SPB duplication phenotype, and all are similarly defective for the spindle assembly checkpoint. The location of all
lesions in the kinase domain also suggests that the methods used to
identify these alleles were somewhat limited. In all cases, temperature
sensitivity and failure to complement the original mps1-1
allele were requirements for identification. Isolates that displayed
some degree of intragenic complementation with mps1-1 could
easily have been overlooked, along with any nonconditional mps1 mutants. In fact, point mutations in the N-terminal
region have now been identified, and these mps1 mutants have
no conditional phenotype. They are lethal in combination with a null
allele of CIN8, but display no defects in SPB duplication
(Geiser et al., 1997
; Winey and Chen, unpublished
observation).
The six mutations reported here also provide information about the
correlation between Mps1p structure and function. Often ts
mutations in protein kinases are located in structural transition regions that lie in between conserved motifs
a suitable location for
mutations that cause instability and thermolability of the protein
without entirely destroying catalytic activity [for examples, see
Lorincz and Reed (1986)
; Carr et al. (1989)
; Hollingsworth et al. (1992)
]. However, many of the mps1
lesions defy this paradigm. Of the six mutations, three affect residues
located in conserved or invariant sequence motifs in the protein kinase
catalytic domain (see Figure 2). The most drastic of these is
alteration of the invariant glutamate residue at position 486 in
subdomain III to a lysine, in mps1-737. Normally, this
residue and Lys468 in subdomain II would be predicted to cooperate in
formation of the docking site for Mg-ATP (Taylor et al.,
1992
). Such an extreme change might be predicted to abolish kinase
activity, but this mutant protein can still support growth, although
mps1-737 cells grow slowly even at the permissive
temperature. Perhaps another glutamate residue nearby can compensate,
possibly Glu488 or Glu491.
Another conserved residue affected is Pro608, which lies in the
peptide-binding lobe of the protein in subdomain VIII and is altered to
serine in the mps1-1237 allele. This proline residue is
somewhat conserved among kinases in general, and identical in Mps1p,
esk, PYT/TTK, and PPK1. The residues in subdomain
VIII appear to be particularly important for enzyme-substrate
interactions. In a variety of kinases, this region participates in the
formation of two side chain pockets in the kinase structure that
interact with substrate residues in the immediate vicinity of the amino acid that will be phosphorylated, contributing to substrate selectivity and orientation (Songyang et al., 1994
, 1996
). The
alteration of Glu517 to lysine in mps1-3796 also affects a
somewhat conserved residue, one that is found in many dual-specificity
kinases (Lindberg et al., 1992
). The remaining three
mutations occur at positions that are not conserved among protein
kinases, but two of these affect residues that are identical in
esk, PYT/TTK, and PPK1.
These six mutations cause a variety of effects on the in vivo and in
vitro activity of GST-Mps1p fusion proteins. All six mutant kinases
must possess some degree of activity in vivo, because they support
growth at the permissive temperature and can cause a G2-M
bias in the cell cycle distribution of wild-type cells when they are
overexpressed. Their gel mobility suggests that autophosphorylation
activity varies greatly; however, the significance of
autophosphorylation for protein function is not yet known. Kinase assay
experiments with GST fusions show that in vitro activity also varies,
but does not correlate well with gel mobility as an assessment of
activity in vivo, with the exception that proteins with little or no
gel shift are inactive in this in vitro assay. The observation that
many mutant Mps1p proteins are inactive in vitro is not unexpected,
since their folding may be compromised enough that they cannot
withstand lysis and purification. Similar results have been obtained
with mutant forms of the yeast cAMP-dependent protein kinase that are
partially or even fully functional in the cell (Gibbs and Zoller,
1991
).
The behavior of the GM-6 and GM-1237 mutant enzymes in vitro raises
interesting questions about the nature of their temperature-sensitive defects. Both fusions display significant in vitro kinase activity, but
this activity does not appear to be thermolabile when the assays are
performed at a temperature that is nonpermissive for growth of the
corresponding mutant strains. This suggests that the ts
defect does not arise soley from temperature-induced denaturation or
aggregation of the protein, but may involve a more complex mechanism,
such as disruption of interactions with other proteins. These two
mutations could affect the ability of the kinase to bind substrates,
activators, or regulatory subunits. Such defects would not be apparent
when purified GM-6 or GM-1237 is assayed; accessory proteins and
relevant substrates would not be present, and regulatory signals such
as phosphorylation would already have been delivered. Such a model is
particularly appealing when information about substrate-binding motifs
is taken into account. The proline-to-serine substitution in
Mps1-1237p occurs very close to residues critical for binding of
substrate residues that lie in the
2 or +1 positions relative to the
phosphorylated amino acid, and the Mps1-6p substitution is near
another group of residues also important for binding at the
2
position (Songyang et al., 1994
, 1996
). These two
perturbations could weaken or disrupt binding of relevant substrates in
a similar manner. If this mechanism is the source of temperature
sensitivity, the mps1-6 and mps1-1237 alleles
could prove useful genetically for identification of important
interacting factors, particularly substrates.
Implications of the mps1-737 Phenotype
The mps1-737 allele is interesting because of the
nature of its mutation (which drastically alters the highly conserved
Glu486 residue), but even more so because of its phenotype. Most of the mps1 alleles described here closely resemble the original
allele, mps1-1, and cause early failure in SPB duplication.
In sharp contrast, cells carrying the mps1-737 allele are
able to form a second, aberrant SPB. Why does this occur, and what does
it indicate about the role of MPS1 in SPB duplication? This
may not be a simplistic loss-of-function situation. We suggest that the
Mps1p kinase is actually required for multiple events in SPB
duplication (Figure 9), and that the
mps1-737 allele represents a separation or alteration of
those functions. Different mutations might affect activity of the
kinase toward different substrates or its ability to respond correctly
to regulatory signals, revealing phenotypic nuances. The Mps1-737p
mutant enzyme may be competent to meet the previously identified early
requirement for the kinase (Winey et al., 1991
) but unable
to carry out a later function. Failure to meet this later requirement
would result in the mps1-737 phenotype. The assembly of an
aberrant second SPB with central and outer plaques and cytoplasmic
microtubules, which closely resembles the mps2 and
ndc1 morphologies (Winey et al., 1991
, 1993
), is
consistent with this type of previously unrecognized late requirement
for MPS1. A later function for MPS1 in SPB
duplication would not have been uncovered without this unique allele;
no other genetic or pharmacological tools currently exist that
reversibly block SPB duplication between the satellite-bearing and
duplicated side-by-side stages.
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Multiple requirements could also provide a simple mechanism for the
intragenic complementation observed when the mps1-737 allele is combined with either mps1-412 or
mps1-3796 (Figure 10). It
appears that Mps1-737p can supply only the earlier duplication function. Like mps1-737, mps1-412 and
mps1-3796 could also be separation-of-function alleles that
cannot meet the early requirement but would be competent to carry out
the later SPB duplication function if given the opportunity. When
combined in a diploid cell, Mps1-737p could cooperate with either
Mps1-412p or Mps1-3796p, together supplying both functions and
permitting growth at a higher temperature. A partial loss of Mps1p
function may also occur under different circumstances. The Cdc37p
protein is required to promote the activity of several protein kinases
in yeast (Gerber et al., 1995
; Dey et al., 1996
;
Schutz et al., 1997
). Mutation of CDC37 causes a
significant decrease in Mps1p kinase activity and results in a late
failure in SPB duplication (Schutz et al., 1997
). However, the partially duplicated SPB morphology seen is different than that
observed for any other duplication mutants (Figure 9). The observation
that different perturbations of Mps1p function correlate with different
mutant SPB morphologies argues strongly that this kinase is required
for multiple events during the duplication process, or possibly
throughout a window of time in G1.
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The differing mps1 mutant phenotypes also invite speculation
about the reversibility of SPB duplication problems. Diploidization by
surviving cells of most mutant strains after brief exposure to the
nonpermissive temperature indicates that SPB duplication failure is
irreversible in these cells. Presumably, a second pole can no longer be
made, and the single, enlarged SPB is left to carry out mitosis alone,
sometimes pulling all the chromosomes to that pole and creating a
viable diploid. Cells with the mps1-737 mutation are able
to recover as viable haploids more frequently than observed for other
alleles. Does this indicate that their different SPB defects can be
reversed? Cells carrying the mps2-1 or ndc1-1
mutations, which share the same SPB morphology as mps1-737, also recover from exposure to the nonpermissive temperature as a
mixture of both haploids and diploids (Winey et al., 1991
;
Thomas and Botstein, 1986
). This correlation suggests that perhaps the defective second SPB in these cells is not always a dead-end product, but in some cases can be remodeled or built upon to produce a fully
functional SPB.
The continued analysis of strains with mutant alleles of MPS1 and other genes important for SPB duplication should yield further insight into this process. Furthermore, analysis of the regulation of MpsIp, and identification of relevant substrates in SPB duplication and spindle checkpoint control, should lead us to a deeper understanding of the duplication process and of the roles of this important kinase in the SPB cycle and in cell cycle control.
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ACKNOWLEDGMENTS |
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We thank Ian Adams and John Kilmartin for the GFP-tagged allele of SPC42; Tim Huffaker, John Kilmartin, Doug Koshland, and Elizabeth Siewert for mps1 isolates; and Mike Culbertson for his4 strains. We also thank Andrea Castillo for critical reading of the manuscript; Tom Giddings and Estelle Steiner for technical advice and assistance; and the members of the Winey laboratory for their input. This work was initiated under an American Cancer Society grant (MV63940) and completed with support from the National Institutes of Health (NIH GM-51312). Additional support was provided by an American Cancer Society Junior Faculty Research Award (A70760) and the Pew Scholars Program in the Biomedical Sciences award (P0020SC) to M.W. A.R.S. was supported by an NIH training grant (GM-07135), National Science Foundation Predoctoral Fellowship, and Truman Scholarship.
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FOOTNOTES |
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* Present address: Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, MO 63167.
Abbreviations used: GFP, green fluorescent protein; GST, glutathione-S-transferase; MBP, myelin basic protein; mps, monopolar spindle; SPB, spindle pole body; ts, temperature-sensitive for growth.
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REFERENCES |
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